Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo09g00052 ATGGTTATCTATGCCCAATCCCAGCTCTCAGGGCCCCACCTCCCTGCATTATCATCCCCCCTTCCCTCTTCCCACTCTGTTAGTGAGGTTCGCCTCCCCCTAAATTCTACCACCCCAAAACACCGCCATCTTCGTGTTGTATGCTCCAGCAGTGATAAGAAGGGAGTACCCAATTCCAACTATGTTGTGCCGCTCAATAAATCATTTTCCGCAGCTAACTCATCCTGCATCACCCGACCCCTTGCCGAGATCCTCCGGGATCTAAACAAGAGAATCCCCGATAACATCGCCCAGAAACTTCCTGAATCCGCTACTTTCATCCCTTGGTTTCATGCCAATAGAATGCTGAGTTTCTACGCCCCTGGATGGTGTGGAGAGATACGAGACGTTATATTCTCCGACAATGGAAGCGTGACTGTGGTGTATCGTGTGACTGTAAGAGGATCTGATGGAGAGGCACACCGTGAATCGACTGGAACAGTATCAGCCACCAATGGCAGTAATGAAGATCCTGTAGCTGCGGCGGAGGAAATAGCTTTTTGCAAGGCTTGTGCAAGATTTGGGCTCGGATTCGAAATGAAAGGCGGAAAATCGAAGTCGGAGTCGAAGAAAGCAGACACCAAGCTTGCAGTGAAGAAAGGTGCAGCCAACGCGGGCAAAAAAGGAAGTAAGAAGGCAGCGAAAGATCCTAACAAGCCCAAGAGGCCCGCCAGTGCCTTCTTCGTTTTTATGGAAGAGTTCAGGAAGAAGTTCAATGAGGAGAATCCGAATAACAAAGCAGTGTCTGCTGTTGGTAAAGCTGCTGGACAGAAATGGAAATCGATGTCAGAAGCTGATAAAGCACCTTACGTTGCCAAGGCTGACAAGAGGAAGGTTGAATATGAAAAAGTTATGAAGGCCTATAACAAGAAACAGGCCAGTGGAGCCAATGCTGCAGAAGAAGATGAATCTGAGAAATCAGTGTCTGAGGTGAATGATGATGAGGAAGGAGATGAGGGCAGCGAAGAGGAGGACGATGACGAGTGA 1026 48.64 MVIYAQSQLSGPHLPALSSPLPSSHSVSEVRLPLNSTTPKHRHLRVVCSSSDKKGVPNSNYVVPLNKSFSAANSSCITRPLAEILRDLNKRIPDNIAQKLPESATFIPWFHANRMLSFYAPGWCGEIRDVIFSDNGSVTVVYRVTVRGSDGEAHRESTGTVSATNGSNEDPVAAAEEIAFCKACARFGLGFEMKGGKSKSESKKADTKLAVKKGAANAGKKGSKKAAKDPNKPKRPASAFFVFMEEFRKKFNEENPNNKAVSAVGKAAGQKWKSMSEADKAPYVAKADKRKVEYEKVMKAYNKKQASGANAAEEDESEKSVSEVNDDEEGDEGSEEEDDDE 341
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 214054 217452 - CmoCh09G000520.1 Cmo09g00052 388054

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo09g00052 341 CDD HMGB-UBF_HMG-box 233 299 - -
Cmo09g00052 341 MobiDBLite consensus disorder prediction 319 341 - -
Cmo09g00052 341 Gene3D High mobility group box domain 216 318 IPR036910 -
Cmo09g00052 341 MobiDBLite consensus disorder prediction 194 235 - -
Cmo09g00052 341 MobiDBLite consensus disorder prediction 303 341 - -
Cmo09g00052 341 PANTHER DNA REPAIR RAD52-LIKE PROTEIN 2, CHLOROPLASTIC 43 192 - -
Cmo09g00052 341 MobiDBLite consensus disorder prediction 196 210 - -
Cmo09g00052 341 Pfam HMG (high mobility group) box 233 302 IPR009071 -
Cmo09g00052 341 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 233 302 IPR009071 -
Cmo09g00052 341 SUPERFAMILY HMG-box 220 306 IPR036910 -
Cmo09g00052 341 SMART hmgende2 232 303 IPR009071 -
Cmo09g00052 341 PANTHER - 43 192 IPR037489 GO:0000724|GO:0003677
Cmo09g00052 341 Coils Coil 284 304 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo09g00052 - - - csv:101203655 299.286
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo01g02078 Cmo09g00052 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo03g00365 Cmo-Chr3:4619234 Cmo09g00052 Cmo-Chr9:214054 2.14E-35 dispersed
Cmo06g00148 Cmo-Chr6:797825 Cmo09g00052 Cmo-Chr9:214054 1.47E-50 dispersed
Cmo07g01101 Cmo-Chr7:5762444 Cmo09g00052 Cmo-Chr9:214054 2.20E-39 dispersed
Cmo09g00052 Cmo-Chr9:214054 Cmo16g01326 Cmo-Chr16:9401084 1.74E-42 dispersed
Cmo01g02078 Cmo-Chr1:14466836 Cmo09g00052 Cmo-Chr9:214054 2.28E-67 transposed
Cmo01g02075 Cmo-Chr1:14458891 Cmo09g00052 Cmo-Chr9:214054 4.21E-92 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g85 . Blo12g00851 . Bda03g00323 Bpe02g00306 Bpe04g00284 Bma04g00290 . . . Cma01g02021 Cma09g00049 Car01g01588 . . Cpe06g00019 . . . . . . . . . . . . . . . Cone4ag2024 Cone7ag1941 Cone17ag1458 . Lsi04g01812 Csa04g02709 . . . . Bda11g00975 . . . . . Sed01g2431 Cmo01g02078 Cmo09g00052 . . . Car09g00041 . . Bhi09g02874 Tan01g5116 Cmetu06g2583 . . Mch11g0052 . Cla11g01828 Cam11g1895 Cec11g1920 Cco11g1929 Clacu11g2059 Cmu11g1864 Cre11g2271 . . Chy07g00398 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004593 1 1 2 0 1 0 2 0 0 1 1 1 2 1 1 2 0 2 2 0 1 1 1 1 1 1 1 6 3 1 37
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10315 PF00505 HMG_box 2.40E-22 CL0114 Cmo TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo09g00052 Cmo_Chr09 FPKM 8.720304 8.165606 10.045584 11.101894 7.711744 6.36629 8.222996 8.128098 7.497237 8.242572