Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo09g00054 ATGAGCTGGTTTTCTTGCATTCGTCCCCGTCGTAAAGACGCCGGCAAGGTCGAAATCGACAACGGGAGTCGGAGGGGGAACTCCTATTCAAATGACATTGGAAAGGGGAAGGAATCACAATCCAGCAATGGAAACAACCGGAGATGTGGGGCTGCACGAAGCTTCCCATTTCGCGAGTTAGCCATGGCCACGAGAGGCTTCAAGGAAGTGAACTTGATTGGTGAAGGCGGTTTTGGAAGAGTTTACAAAGGACGATTAGGAACAGGCCAGCTCGTTGCGATTAAACAACTCGACCGTAAAGGTCTTCAGGGATATCAGGAATTCATCGTCGAAGTTCTCATGTTAAGTTTATTAGATGATAGTAATCTTGTCACCTTGATTGGTTATTGTACTGATGGAGATCAAAGACTGTTGGTCTACGAGTATATGTCGATGGGAAGCTTGGAAAACCATCTTTTTGGCTTGTCCCCCGAACGACCGCCATTGAGTTGGAACACTCGAATCAAGATTGCTCTTGGTGCAGCCCAGGGGCTTGAGTATCTTCACTGCACAGCCAATCCACCAGTCATCTACCGTGACTTGAAATCTGCAAACATTTTACTGGATGATGACTTCAATCCAAAGCTCTCAGATTTCGGCCTCGCGAAGTTAGGACCGGTTGGTGACAACACTCATGTTTCCACCAGAGTAATGGGAACACAGGGTTATTGTGCTCCGGAGTATGCCATGAGTGGCAAACTCACCCTTAAGTCTGATATTTATTGCTTTGGTGTAGTTCTGTTGGAGATAATTACAGGTAGGAAAGCTATAGACTCCACCAAGAAACCAGGAGAGCAAAATCTGGTTGTTTGGTCTCGCCCTTTCCTGAAAGACCGGAGGAAGTTCATTCAATTGATCGACCCGCTGCTCGAAGGTCGCTACCATCTTCGTTGTGTACATCATGCAATTGCAATTGCTGCAATGTGTCTCCAGGAGCAGCCAACGTTCCGGCCAATTGTCAGTGATATCGTTGTTGCCCTTGAGTACTTGGCTTCTCAGAGTTGCGGATCAGAACAACCGAGGGACGAGATTCATGTAAGGGTGGTTGCTGTACAAGTCTTCGTATGGCTGTGGAAGATGCATTTGCAGTTTATGGTGTTAGCAAAACCCGGCCAACTCCAAATATGCAAGCAATCCACATGCATTTTTGAGTGCCATTATCTCCCCTTTGATGGCCGTTGCACATATTTCAGTTCTAACAGTGTAGACCCAAGAGTTGGCCAGAATTTGGAGCTTGAATTGTTAGAAGTAGGTGCAAAGAGTGAATTCAACTCCTGTGGCTCCCTTTTCACTCCCGCTTTCCTTTCTTGGCGGTTTTGTTGTGCTTTGCACCCAACTCATCTTCTACTGATCTGCGCCACAATGAGGCTCCGTTTGGGGTTTATCGCGTCAATTTATCTCCTCCAGGTTCTATATTTTGTCCTAGCGTATGCAGAGAGGTCTAACATACGGTTGCTGTTATCTACGAATGGCACATCAGGGGAAAAACATTCTGAAGGATATTGCACAATGTATGGTATCTGTGGAAAACGACCTGATGGTAAGGTGTTGAACTGTCCGACTGGTACCCCATCTGTGCAGCCAGACAATCTTCTTTCATCAAAGATTCAAAGTCTATGTCCAACTATTACTGGCAATGTTTGTTGCACAGAAGAACAATTTGACACCCTACGATCACAAGTTATGCAGGCTATTCCGTTTCTTGTTGGTTGTCCAGCATGCTTAAGAAACTTTTTGAACCTATTCTGTGAGCTTACCTGTTCTCCAAATCAGAGCTTATTCATTAATGTAACTTCTGTTTTAAAGGTTAATAGCAGCCTTACAGTTGATGCCATTGATTATTATGTAGCTGATGCTTTTGGTGAAGGACTATTTGAGTCCTGCAAAGATGTAAAATTTGGTACGATGAACACACGAGCCATGCAATTTATTGGTGCTGGTGCTCAAAATTTCAAAGAGTGGTTTGCTTTTATCGGTAAACGAGCTAGTCCTAGCATGCCTGGTTCACCATATGCTATTGGATTTCCCTCTACCATGTCTGAGTCATCTGGAATGAAGCATATGAATGTATCGGCTTATTCTTGTGGAGATACTTCACTAGGATGTTCCTGTGGTGATTGCCCTTCAGCTCCCGTCTGCAGTAGTACTTCAACCCCCGTTTTCCATAGAAAAAATTCTTGTTCAGTGAGAATTGGGTCTCTCAAGGTCAAATGTGTCGACTTCGCTCTGTGTATCCTATACATTATAATTGCCTCTGCTTTTCTTGGATGGAGTTTGTTTTATCGCAAATCTCAAAAGAGCCCTTCTTCGGGAACTAAAACAATGCCGAATATTATGGATGGTAGCAGTCTCCATTCTGCTACTAGGCAAAAGGATGAAAGTTTGCCAATGCAGATGCTTGAAGATGCTCCTCAAATCAGAAGTAGGATTCAGCTTTCAGTTGTCCAGGGATACATGTCCAATTTTTATAGGAAATATGGGAAATGGGTGGCTAGAAATCCAACATTGGTGTTGATTTCATCACTCGCCATTGTTCTTCTTCTGTGTTTAGGCCTCATTCGTTTCAAGGTGGAGACAAGGCCTGAGAAGCTATGGGTAGGACCAGGAAGCAGAGCATCCCAAGAGAAGGAATTTTTTGACACACATTTAGCCCCTTTTTATAGGATTGAACAGATTATAATAGCCACAGTTCCAGATACTGAGCACGGAAAGCCGCCAAGTATTTTGAATGATAACAATGTTAAGTTACTGTTTGGCATACAAAAGAAGATAGATGGTATTCGAGCTAATTATTCTGGTTCAAGTGTATCTCTAAATGACATTTGCTTGAAGCCATTGGATCGTGATTGTGCCACCCAGAGTGTCCTGCAGTATTTCCAGATGAATCCAGAAAATTTTGATAACTATGGAGGAGTCGAACACCTTGAATATTGTTTTGAGCATTACTCCTCTGCAGACAGTTGCAGGAGTGCATTTAAAGCTCCTCTTGATCCAAGCACCGCATTAGGGGGATACTCTGGGAACAATTATTCAGAAGCTTCTGCGTTCTTAATAACTTATCCAGTGAATAATGCTATTAATAAAGAAGGGAATGAATCTGGTCGAGCTGTGGCTTGGGAGAAAGCCTTCATTCAGTTGGCTAAGACCGAGTTATTGACAATGGTGCAATCTCAAAATTTGACGCTTTCTTTTTCTTCGGAAAGTTCCATTGAAGAAGAATTAAAAAGAGAGAGTACTGCTGATGTCATCACAATCTTGATAAGCTATCTTGTGATGTTTGCTTACATATCTCTTACTCTGGGCGATAGACCACATTTATCTACTTTTTTTGTTTCATCAAAGGTGTTACTTGGTCTCTCCGGAGTTGTTCTTGTCATGTTGTCTGTTCTTGGATCAGTCGGGTTTTTCAGTGCAATTGGAGTCAAATCTACTCTAATCATTATGGAAGTTATCCCTTTCCTTGTTCTGGCAGTTGGAGTGGATAACATGTGTATATTGGTACATGCTGTTAAACGGCAGTCAGTAGAATTGCCTTTAGAAGGACGAATTAGCAATGCGCTCGTAGAAGTTGGACCATCCATAACACTAGCAAGTTTATCTGAGGTTCTTGCATTTGCAGTTGGAAGTTTCATTCCTATGCCAGCATGCCGTGTCTTTTCCATGTTTGCAGCATTGGCCGTTCTTCTGGACTTCCTGCTGCAAGTTACAGCTTTTGTTGCTCTCATAGTATTTGATTTCTTAAGAACTGAGGATAAGAGAGTTGATTGTTTTCCGTGTATTAAGAACTCAGGATATGCTGGAAGTGATAAAGGCATCACTCAGAGGAATCCTGGCTTGTTAGCCCGATACATGAAGGAGATCCATGCCCCTGTGCTTAGCATCTGGGGAGTCAAAATAGTTGTCATATCCATCTTTGTTGGGTTCACATTGGCAAGCATTGCACTATGCACCAGAATTGAAGCTGGTTTGGAACAAAAGATTGTCCTCCCCAAAGATTCTTATCTCCAGGGGTACTTCAATAACATTTCTGAACATCTCAGAATAGGTGCACCAGTATACTTCGTTGTAAAGAACTACAATTATAGCTCAGACTCAAGACAGACAAACCAATTATGCTCCATCAGTCAATGTGACTCAAACTCTCTTTTAAATGAGATTGCAAAAGCTTCACTAATACCAGAGTCAAGTTACATTGCTAAACCAGCTGCTTCATGGCTTGATGATTATCTTGTGTGGATATCTCCAGAAGCATTTGGATGTTGTCGGAAGTTCACGAATGGGAGCTATTGCCCCCCTGATGATCAGGCCCCTTGCTGTGCTTCTAATGGTGGTTCTTGTGGTCTGAATGGAGTATGCAAAGATTGTACAACGTGCTTTCTTCACTCGGATCTGCATGGTGGTAGGCCATCCACTACACAATTTAAGGAGAAATTGCCATGGTTCCTCAGTGCTCTACCTTCTGCTGATTGTGCTAAAGGAGGTCATGGGGCATACACTAGTAGTGTTGAACTGAAAGGCTATGAAAATGGTGTTATTCAAGCATCTTCTTTCAGAACATACCATACTCCCCTGAATAAGCAGGTTGACTATATTAATTCGATGAGGGCTGCTCAAGAATTGAGTTCAAGGGTTTCTGATTCTTTGAAGATAGAAGTCTTTCCGTATTCTGTATTTTACATGTTTTTTGAGCAATACCTCAATATATGGAGAACAGCACTGATCAACCTTGCCATCGCTATTGGTGCGGTGTTTATTGTGTGTCTGATCATCACATGCAGCTTATGGACCTCGGCTATCATCTTGTTGGTGTTGGCAATGATTGTTGTGGATCTCATGGGCGTGATGGCAATTTTGAATATCCAATTGAACGCAATCTCTGTTGTCAATCTTGTCATGTCTGTGGGAATTGCTGTTGAATTTTGTGTGCATTTGACACATGCTTTCTCGGTTAGCAGTGGAGATAAAGACCAACGCATGAAGGAGGCTCTCAGTACAATGGGAGCATCTGTCCTTAGTGGAATCACACTAACGAAGCTAGTCGGGGTCCTTGTACTTTGCTTCTCCAGGACTGAAGTTTTTGTGGTTTATTATTTCAAAATGTACTTGGCACTAGTACTTCTTGGATTTTTGCATGGTCTCGTATTCTTGCCGGTAGTGTTGAGCTTGCTCGGTCCACCTTCAAGATGTGTGTTCGTCGAGCAACAGGACAATCGGCCCTCTACTTCGTCTCGGTCATGA 5277 42.94 MSWFSCIRPRRKDAGKVEIDNGSRRGNSYSNDIGKGKESQSSNGNNRRCGAARSFPFRELAMATRGFKEVNLIGEGGFGRVYKGRLGTGQLVAIKQLDRKGLQGYQEFIVEVLMLSLLDDSNLVTLIGYCTDGDQRLLVYEYMSMGSLENHLFGLSPERPPLSWNTRIKIALGAAQGLEYLHCTANPPVIYRDLKSANILLDDDFNPKLSDFGLAKLGPVGDNTHVSTRVMGTQGYCAPEYAMSGKLTLKSDIYCFGVVLLEIITGRKAIDSTKKPGEQNLVVWSRPFLKDRRKFIQLIDPLLEGRYHLRCVHHAIAIAAMCLQEQPTFRPIVSDIVVALEYLASQSCGSEQPRDEIHVRVVAVQVFVWLWKMHLQFMVLAKPGQLQICKQSTCIFECHYLPFDGRCTYFSSNSVDPRVGQNLELELLEVGAKSEFNSCGSLFTPAFLSWRFCCALHPTHLLLICATMRLRLGFIASIYLLQVLYFVLAYAERSNIRLLLSTNGTSGEKHSEGYCTMYGICGKRPDGKVLNCPTGTPSVQPDNLLSSKIQSLCPTITGNVCCTEEQFDTLRSQVMQAIPFLVGCPACLRNFLNLFCELTCSPNQSLFINVTSVLKVNSSLTVDAIDYYVADAFGEGLFESCKDVKFGTMNTRAMQFIGAGAQNFKEWFAFIGKRASPSMPGSPYAIGFPSTMSESSGMKHMNVSAYSCGDTSLGCSCGDCPSAPVCSSTSTPVFHRKNSCSVRIGSLKVKCVDFALCILYIIIASAFLGWSLFYRKSQKSPSSGTKTMPNIMDGSSLHSATRQKDESLPMQMLEDAPQIRSRIQLSVVQGYMSNFYRKYGKWVARNPTLVLISSLAIVLLLCLGLIRFKVETRPEKLWVGPGSRASQEKEFFDTHLAPFYRIEQIIIATVPDTEHGKPPSILNDNNVKLLFGIQKKIDGIRANYSGSSVSLNDICLKPLDRDCATQSVLQYFQMNPENFDNYGGVEHLEYCFEHYSSADSCRSAFKAPLDPSTALGGYSGNNYSEASAFLITYPVNNAINKEGNESGRAVAWEKAFIQLAKTELLTMVQSQNLTLSFSSESSIEEELKRESTADVITILISYLVMFAYISLTLGDRPHLSTFFVSSKVLLGLSGVVLVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQSVELPLEGRISNALVEVGPSITLASLSEVLAFAVGSFIPMPACRVFSMFAALAVLLDFLLQVTAFVALIVFDFLRTEDKRVDCFPCIKNSGYAGSDKGITQRNPGLLARYMKEIHAPVLSIWGVKIVVISIFVGFTLASIALCTRIEAGLEQKIVLPKDSYLQGYFNNISEHLRIGAPVYFVVKNYNYSSDSRQTNQLCSISQCDSNSLLNEIAKASLIPESSYIAKPAASWLDDYLVWISPEAFGCCRKFTNGSYCPPDDQAPCCASNGGSCGLNGVCKDCTTCFLHSDLHGGRPSTTQFKEKLPWFLSALPSADCAKGGHGAYTSSVELKGYENGVIQASSFRTYHTPLNKQVDYINSMRAAQELSSRVSDSLKIEVFPYSVFYMFFEQYLNIWRTALINLAIAIGAVFIVCLIITCSLWTSAIILLVLAMIVVDLMGVMAILNIQLNAISVVNLVMSVGIAVEFCVHLTHAFSVSSGDKDQRMKEALSTMGASVLSGITLTKLVGVLVLCFSRTEVFVVYYFKMYLALVLLGFLHGLVFLPVVLSLLGPPSRCVFVEQQDNRPSTSSRS 1758
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 219005 240860 + CmoCh09G000540.1 Cmo09g00054 388056
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo09g00054 1758 MobiDBLite consensus disorder prediction 23 49 - -
Cmo09g00054 1758 SUPERFAMILY Protein kinase-like (PK-like) 47 341 IPR011009 -
Cmo09g00054 1758 Pfam Protein kinase domain 68 334 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo09g00054 1758 SUPERFAMILY Multidrug efflux transporter AcrB transmembrane domain 1070 1257 - -
Cmo09g00054 1758 PANTHER NPC INTRACELLULAR CHOLESTEROL TRANSPORTER 1 473 1755 - -
Cmo09g00054 1758 TIGRFAM 2A060601: Niemann-Pick C type protein family 515 1737 IPR004765 GO:0005319|GO:0016021
Cmo09g00054 1758 Gene3D Phosphorylase Kinase; domain 1 37 142 - -
Cmo09g00054 1758 SMART serkin_6 67 343 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo09g00054 1758 ProSiteProfiles Sterol-sensing domain (SSD) profile. 1094 1257 IPR000731 -
Cmo09g00054 1758 Pfam Patched family 1526 1736 IPR003392 GO:0016021
Cmo09g00054 1758 Pfam Patched family 888 1372 IPR003392 GO:0016021
Cmo09g00054 1758 Gene3D Transferase(Phosphotransferase) domain 1 143 365 - -
Cmo09g00054 1758 Pfam Niemann-Pick C1 N terminus 513 745 IPR032190 -
Cmo09g00054 1758 ProSitePatterns Protein kinases ATP-binding region signature. 73 95 IPR017441 GO:0005524
Cmo09g00054 1758 ProSiteProfiles Protein kinase domain profile. 67 343 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo09g00054 1758 MobiDBLite consensus disorder prediction 15 49 - -
Cmo09g00054 1758 CDD STKc_IRAK 73 341 - -
Cmo09g00054 1758 ProSitePatterns Serine/Threonine protein kinases active-site signature. 189 201 IPR008271 GO:0004672|GO:0006468
Cmo09g00054 1758 Gene3D Multidrug efflux transporter AcrB transmembrane domain 1053 1266 - -
Cmo09g00054 1758 Gene3D Multidrug efflux transporter AcrB transmembrane domain 1543 1741 - -
Cmo09g00054 1758 PANTHER PATCHED FAMILY PROTEIN 473 1755 - -
Cmo09g00054 1758 SUPERFAMILY Multidrug efflux transporter AcrB transmembrane domain 1545 1737 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo05g00994 Cmo09g00054 CCT
Cmo05g00994 Cmo09g00054 ECH
Cmo01g02074 Cmo09g00054 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g02074 Cmo-Chr1:14456723 Cmo09g00054 Cmo-Chr9:219005 0 dispersed
Cmo05g00994 Cmo-Chr5:8007821 Cmo09g00054 Cmo-Chr9:219005 0 dispersed
Cmo09g00054 Cmo-Chr9:219005 Cmo06g01473 Cmo-Chr6:10592585 6.78E-145 dispersed
Cmo12g00618 Cmo-Chr12:3855597 Cmo09g00054 Cmo-Chr9:219005 2.42E-115 dispersed
Cmo01g02073 Cmo-Chr1:14452625 Cmo09g00054 Cmo-Chr9:219005 2.11E-06 transposed
Cmo02g00293 Cmo-Chr2:1453968 Cmo09g00054 Cmo-Chr9:219005 0 transposed
Cmo01g02072 Cmo-Chr1:14440588 Cmo09g00054 Cmo-Chr9:219005 2.20E-140 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74550 PF02460 Patched 1.90E-55 CL0322 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo09g00054 K12385 - csv:101203163 2345.08