Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo09g00055 ATGGATCCTTACAGGCACCGCCCTTCAAGTGGCTACAACAGCCCCTTCTGGACTACAAATTCTGGCGCTCCAGTGTGGAACAATAACTCGTCGTTAACCGTTGGACCCAGGGGTCCTATTCTCCTAGAGGATTATCATCTCGTGGAGAAACTTGCTAACTTTGATAGAGAGCGGATCCCAGAGCGTGTTGTCCATGCTAGAGGAGCTAGTGCAAAAGGGTTTTTTGAGGTGACTCATGATATTACCCACCTTACTTGTGCTGATTTCCTTCGTGCCCCTGGAGTTCAGACTCCAGTTATTGTACGTTTCTCCACTGTTATCCATGAGCGCGGTAGCCCTGAAACGCTGAGAGATCCCCGAGGTTTTGCTGTGAAGTTTTACACCAGGGAGGGAAATTTTGATCTTGTGGGCAACAACTTCCCTGTATTTTTCATCCGTGATGGTATGAAATTTCCAGACATGGTTCATGCTCTCAAACCGAATCCCAAGTCCCATATCCAGGAGAATTGGAGGGTCCTTGACTTCTTTTCTCATCATCCAGAAAGCCTGAATATGTTCACATTTCTATTTGATGATATTGGCATCCCACAAGATTACAGGCACATGGACGGTTCAGGTGTTAACACCTATACTCTGATTAACAAGGCAGGGAAAGCACACTATGTGAAATTTCACTGGAGGCCTACCTGTGGAGTTAAGTCCTTGCTGGAGGAAGATGCTATCCGTGTTGGAGGAAGTAATCATAGTCATGCTACTCAGGACCTCTATGATTCAATTGCAGCCGGCAACTACCCTGAATGGAAGCTTTTCATTCAAACTATTGACCCTGATCATGAAGATAGATATGATTTTGACCCTCTGGATGTAACCAAGACCTGGCCCGAGGATATCTTGCCCTTGCAGCCAGTTGGTCGCATGGTTTTGAATAAGAACATCGATAACTTCTTTGCAGAGAATGAACAACTGGCCTTCTGTCCTGCCATTATAGTTCCTGGAGTCTACTATTCAGATGACAAATTGCTTCAGACCAGGATCTTCTCGTATGCTGATACCCAGAGGCACCGTCTTGGACCAAACTATCTGCAACTCCCTGCTAATGCACCCAAGTGTGCTCACCACAACAATCACCACGAGGGTTTCATGAACTTTATGCACCGAGATGAAGAGGTCAATTACTTCCCTTCAAGGTTTGATCCTGCTCGCCACGCTGAGAAGTATCCTCACCCACCAGCTGTATGCACTGGAAGGCGTGAGAGGTGTGTAATTGAGAAGGAGAACAACTTCAAGGAGCCTGGAGAGAGATACAGATCTTGGACACCAGACAAGCAAGAACGATTTATCCGCAGATGGGTGGATGCTTTGTCTGACACTCGTGTCACCCATGAGATCCGCAGCATCTGGGTTTCTTACTGGTCTCAGGCGGACAGGTCTCTTGGTCAGAAGCTTGCATCTCGTCTCAACAGTTGTCTGTTTTGGTCAATAACGAGAGGCTTCAAAACCACTAAACCCCACAAGCATCCAACATTATCATACAGTTCTTCTTCTTCGTGGCCATTTCAGGAACAGTGCTCAAATATTGAGTACCCACCTGGGAATCTCTTGGAATCTTTCAAATTTGTGAGACCAGATTGCTTGAATCACTGCTGTGTTGAGGGTATATCCAAATCGGTGCTTCCAAGTTCTAAACATATTGGGATTTGTGGGGAGTTTTGTTTTATGGAGGATTGCATGTTATCACCAGCGACAATGCTGGATGCTCCAGCTGAGGCAGCCATGGATTTGGACTACATGGATGGGCTGCTTTTGGAAGGTTGCTGGTTAGAGACCGCAGAAGGTACTGAGTTTCTTCATCCTAGCACCGCAAGTTTTGGTGCCAACCTAGACCCTTTGATTGCATGGCCTGCTACAGACATGAATGGTGACTTTCACATGAGCCAGATTACAAGAGCTAATCAAGAAGAACCGAGGAGAATCTTGACCGATGAGGCGTCTATGGGGCGGGGACGAGTTGATATGGAGCAAGAGGGATGCTCTGGTCAATCAGAAAACCATGGTTTTGAAGGCTCTGAATTGTGCAGAAGATTGTGGATAGGACCTGGAGATCATCTGGGCTCTGCATCTTCTGTGATGGAGAAGTTAATTAGAGCTGTTGGGTATATCAAAGATTTTGTTAGAGACAAAGATGTTCTTGTTCAAGTATGGGTGCCTATAAACAGAGGGGGAAGAAGTGTTCTCATCACAAATGATCTGCCATTCTCTCAGAATTCCAGCTGCACAAGACTCACCAAGTACCGCGATGTCTCTGTGAAATATGAATTCACTGCTGATGATGATTCTAAAAATGCTTTGGGATTGCCTGGTCGGGTGTTCTCAAGAAAGGTTCCAGAGTGGACTCCTGATGTTCGATTCTTTAGAAGCGACGAGTACCCGAGAGTCAATCATGCGCACGAGCACGATGTTCGTGGAACTGTAGCACTTCCCATCTTTGAACAAGGTAGCAAGAACTGTTTAGGAGTCATTGAAGTTGTTATGGTTACCCAGCAGATCAAATATGGTTCAGAACTTGAGAGTGTTTGCAAAGCTCTTGAGGTCAGTCTCCTTTATATTTTGTCTTTAAATTCTTTGTTACATTTACCTCAAGGTTTGAATTTGTACAAATCAACTCAAAATCTCATGAACTCACAAACATTCAGGAAGTGTTGTTCCTTTTATCAATGCTTCAATTGTCTTGAAGCCAAACGGCATTTGAACGATGAGTTAGACCATTTTGCAGCAGTCAAGCTTCGGAGCTCCGATGTTATCGGCCACCCCGATAAAAAGGTATTTAACAGGTCCAATGAAGCTGTATTACTAGAGATTCAAAACACTTTGAAATCTGCTTGTGAAACGCATGGCTTGCCTTTGGCTCAAACTTGGGCATCATGTATCCAACAAAATAGAGAGGGCTGCAGGCACTCGGATGAGAACTACAGTTGTTGCGTTTCTACGGTAGACCGGGCTTGCTTTGTGGCCGATCCTCGAGTTCAGGAATTTCACGAGGCATGCTCCGAGCATCATTTGCTAAAAGGCGAAGGCATTGTTGGGATGGCATTCAAATCTAATGAGCCATGTTTCTCAAGTGATATTACATCCTTTTGCAACACAGAATATCCTCTCTCACACCATGCCAAGCTGTTCGGATTACACGCTGCAGTTGCCATACGCCTTCGTTGCATTTACATTAGTAAAACCGATTTCGTATTAGAGTTCTTCCTGCCTGTAGACTGTATAGATCCTGAAGAGCAGAGAGTGCTGCTCACTTCATTGTCCACGATTATACAACGATCTTGCAGGAGCCTGCGTCTCGTAAACGATAAGGAGTGTAGGGAGGAAAATATGCAACAATCTTGTCGAAGATCCAAGGTAGAACATCATCAGCTAGAAATGAGTCATCCAACAAATTCATTGTTAACATCATCTGTGCAAAACATCCAACAACAGAGTGGATTCGTCTCGTTATTCCAGGACGGCAAAACATCGGAGATCTTAAGTTCCTCCGGTTACCAGCATCATGAACTTAATTACAATTTGAATGGCGTCGTCGAGGACAGTGAAGAGTGTGCAACTGTAGGTAATAGTTGCTTTTCTGATACAGGCTTGGGAAGAACCGGTGAGAAAAGGCGAACCAAGGTCGACAAAACGATCACGTTACAAGTTCTTCGGCAATATTTCGCTGGTAGCTTAAAGGATGCTGCAAAGAGCATTGGAGTTTGTCCGACCACATTGAAAAGGATATGTCGACAACATGGGATTAAACGTTGGCCTTCTCGAAAAATAAAAAAGGTTGGTCACTCATTGCAGAAACTCCAGCTCGTAATCGACTCTGTGGAAGGTGCATCAGGTGCTTTTCAAATTGGGTCCTTGTATTCTAATTTCCAGGATTTGGCATCTCCAAATCTATCAGGTTCAGGTTCAGGTCCAGTTTTAAGTGCAAAGATGGGAGATTGCATGAAAACATCGAGCAATCCGAACGAGGTCGGGATGAGCAACCTCCAAGGTGGTGGTGCATCGAAATCTCCATCGTCTTCGTGCAGCCAGAGCTCGAGTTCGAACCAATGCTTTTCTAGTAGGAGCCATAAAAATGTTGGGCATTGGAACAAAGGTGGAAGTGAAGATCAAATGGGAGGAGGAGAGAATCCTTGTGATGGAGAGCTGAAGAGGGTCAAAAGTGAGGTAGAGATACATGTATCAATTATGGAAGGATCAAACATCCCTCGAAGATCCCAAAGCTGCAAGTCTCTCTGCAAACACCCTGCCACTGAATGTCTGGTGCACACAGCAAAAGAAGGCGATGGGATGGCTGAGAGGGTGGAAGTTCAGAAAGTAAAGGTCAGCTATGGGGAGGAGAAAATCCGGTTTCGAGTGCATAACCAGTGGCGATACGAAGAGTTACTGAACGAAGTGGGAAAACGATTTAGTATCAGTGACATGACTAAATTTGATCTCAAGTATTTAGATGATGAATCTGAATGGGTGTTGTTAACAAGTGACACAGATCTGCAGGAGTGTTTTCATGTTTACAAATCGTGTCGAATCCAAACGATAAGACTTTTGGTTCAGGAGTCTCGTCGCCATAAGAGAAACTGTGTGGCGAGCGGAGGGTTCTCATGA 4650 44.97 MDPYRHRPSSGYNSPFWTTNSGAPVWNNNSSLTVGPRGPILLEDYHLVEKLANFDRERIPERVVHARGASAKGFFEVTHDITHLTCADFLRAPGVQTPVIVRFSTVIHERGSPETLRDPRGFAVKFYTREGNFDLVGNNFPVFFIRDGMKFPDMVHALKPNPKSHIQENWRVLDFFSHHPESLNMFTFLFDDIGIPQDYRHMDGSGVNTYTLINKAGKAHYVKFHWRPTCGVKSLLEEDAIRVGGSNHSHATQDLYDSIAAGNYPEWKLFIQTIDPDHEDRYDFDPLDVTKTWPEDILPLQPVGRMVLNKNIDNFFAENEQLAFCPAIIVPGVYYSDDKLLQTRIFSYADTQRHRLGPNYLQLPANAPKCAHHNNHHEGFMNFMHRDEEVNYFPSRFDPARHAEKYPHPPAVCTGRRERCVIEKENNFKEPGERYRSWTPDKQERFIRRWVDALSDTRVTHEIRSIWVSYWSQADRSLGQKLASRLNSCLFWSITRGFKTTKPHKHPTLSYSSSSSWPFQEQCSNIEYPPGNLLESFKFVRPDCLNHCCVEGISKSVLPSSKHIGICGEFCFMEDCMLSPATMLDAPAEAAMDLDYMDGLLLEGCWLETAEGTEFLHPSTASFGANLDPLIAWPATDMNGDFHMSQITRANQEEPRRILTDEASMGRGRVDMEQEGCSGQSENHGFEGSELCRRLWIGPGDHLGSASSVMEKLIRAVGYIKDFVRDKDVLVQVWVPINRGGRSVLITNDLPFSQNSSCTRLTKYRDVSVKYEFTADDDSKNALGLPGRVFSRKVPEWTPDVRFFRSDEYPRVNHAHEHDVRGTVALPIFEQGSKNCLGVIEVVMVTQQIKYGSELESVCKALEVSLLYILSLNSLLHLPQGLNLYKSTQNLMNSQTFRKCCSFYQCFNCLEAKRHLNDELDHFAAVKLRSSDVIGHPDKKVFNRSNEAVLLEIQNTLKSACETHGLPLAQTWASCIQQNREGCRHSDENYSCCVSTVDRACFVADPRVQEFHEACSEHHLLKGEGIVGMAFKSNEPCFSSDITSFCNTEYPLSHHAKLFGLHAAVAIRLRCIYISKTDFVLEFFLPVDCIDPEEQRVLLTSLSTIIQRSCRSLRLVNDKECREENMQQSCRRSKVEHHQLEMSHPTNSLLTSSVQNIQQQSGFVSLFQDGKTSEILSSSGYQHHELNYNLNGVVEDSEECATVGNSCFSDTGLGRTGEKRRTKVDKTITLQVLRQYFAGSLKDAAKSIGVCPTTLKRICRQHGIKRWPSRKIKKVGHSLQKLQLVIDSVEGASGAFQIGSLYSNFQDLASPNLSGSGSGPVLSAKMGDCMKTSSNPNEVGMSNLQGGGASKSPSSSCSQSSSSNQCFSSRSHKNVGHWNKGGSEDQMGGGENPCDGELKRVKSEVEIHVSIMEGSNIPRRSQSCKSLCKHPATECLVHTAKEGDGMAERVEVQKVKVSYGEEKIRFRVHNQWRYEELLNEVGKRFSISDMTKFDLKYLDDESEWVLLTSDTDLQECFHVYKSCRIQTIRLLVQESRRHKRNCVASGGFS 1549
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 241552 253002 - CmoCh09G000550.1 Cmo09g00055 388057

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo09g00055 1549 SUPERFAMILY CAD & PB1 domains 1453 1534 - -
Cmo09g00055 1549 CDD PB1_NLP 1454 1534 IPR034891 -
Cmo09g00055 1549 MobiDBLite consensus disorder prediction 1328 1376 - -
Cmo09g00055 1549 SMART PB1_new 1452 1535 IPR000270 GO:0005515
Cmo09g00055 1549 Pfam Catalase 18 398 IPR011614 GO:0004096|GO:0020037
Cmo09g00055 1549 ProSitePatterns Catalase proximal heme-ligand signature. 344 352 IPR002226 GO:0020037
Cmo09g00055 1549 ProSiteProfiles catalase family profile. 14 492 IPR018028 GO:0004096|GO:0006979|GO:0020037
Cmo09g00055 1549 Pfam Catalase-related immune-responsive 422 486 IPR010582 -
Cmo09g00055 1549 ProSiteProfiles RWP-RK domain profile. 1209 1295 IPR003035 -
Cmo09g00055 1549 SMART Catalase_2 18 401 IPR011614 GO:0004096|GO:0020037
Cmo09g00055 1549 SUPERFAMILY Heme-dependent catalase-like 11 489 IPR020835 GO:0020037
Cmo09g00055 1549 Gene3D - 1451 1536 - -
Cmo09g00055 1549 PANTHER PROTEIN NLP4 589 864 - -
Cmo09g00055 1549 PANTHER PROTEIN NLP4 924 1538 - -
Cmo09g00055 1549 MobiDBLite consensus disorder prediction 1326 1396 - -
Cmo09g00055 1549 ProSitePatterns Catalase proximal active site signature. 54 70 IPR024708 GO:0004096
Cmo09g00055 1549 Gene3D Catalase core domain 9 496 - -
Cmo09g00055 1549 Pfam PB1 domain 1454 1534 IPR000270 GO:0005515
Cmo09g00055 1549 PRINTS Catalase signature 299 326 IPR018028 GO:0004096|GO:0006979|GO:0020037
Cmo09g00055 1549 PRINTS Catalase signature 331 357 IPR018028 GO:0004096|GO:0006979|GO:0020037
Cmo09g00055 1549 PRINTS Catalase signature 134 152 IPR018028 GO:0004096|GO:0006979|GO:0020037
Cmo09g00055 1549 PRINTS Catalase signature 115 132 IPR018028 GO:0004096|GO:0006979|GO:0020037
Cmo09g00055 1549 PRINTS Catalase signature 31 54 IPR018028 GO:0004096|GO:0006979|GO:0020037
Cmo09g00055 1549 PRINTS Catalase signature 94 112 IPR018028 GO:0004096|GO:0006979|GO:0020037
Cmo09g00055 1549 Pfam RWP-RK domain 1227 1275 IPR003035 -
Cmo09g00055 1549 ProSiteProfiles PB1 domain profile. 1452 1535 IPR000270 GO:0005515
Cmo09g00055 1549 PANTHER PROTEIN NLP8 589 864 IPR045012 GO:0003700
Cmo09g00055 1549 PANTHER PROTEIN NLP8 924 1538 IPR045012 GO:0003700
Cmo09g00055 1549 CDD catalase_clade_1 16 486 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo09g00055 K03781 katE, CAT, catB, srpA; catalase [EC:1.11.1.6] - bhj:120085671 1085.09
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo01g02071 Cmo09g00055 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g00618 Cmo-Chr4:3076828 Cmo09g00055 Cmo-Chr9:241552 3.39E-12 dispersed
Cmo05g00996 Cmo-Chr5:8023898 Cmo09g00055 Cmo-Chr9:241552 0 dispersed
Cmo09g00055 Cmo-Chr9:241552 Cmo12g00616 Cmo-Chr12:3848542 0 dispersed
Cmo01g02071 Cmo-Chr1:14430546 Cmo09g00055 Cmo-Chr9:241552 3.60E-39 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g95 Blo01g01637 Blo12g00853 . Bda03g00320 Bpe02g00307 Bpe04g00281 . Bma01g02411 . . Cma01g02014 Cma09g00053 Car01g01583 . . Cpe06g00022 . . . . . . . . . . . . . . . Cone4ag2020 Cone7ag1936 . Cone20ag0023 Lsi04g01806 Csa04g02701 . . Blo17g00903 . Bda11g00974 . . . . . Sed01g2434 Cmo01g02071 Cmo09g00055 . . . Car09g00046 . Cpe02g00035 Bhi09g02885 Tan01g5108 Cmetu07g0208 . . Mch11g0056 . Cla11g01823 Cam11g1889 Cec11g1914 Cco11g1922 Clacu11g2054 Cmu11g1859 Cre11g2265 . . Chy07g00393 Cme07g00054
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003158 2 5 3 1 2 0 2 1 0 1 1 1 2 1 1 2 0 3 2 1 1 1 1 1 1 1 1 4 4 2 48
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10316 PF00199 Catalase 1.40E-170 No_clan Cmo TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo09g00055 Cmo_Chr09 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0