Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo09g00058 ATGATGGATAAGAAGGAGAAAAACTCCCTCACGGTGGCTCCTTTTGAGTGTGCTTGGCTCAAGGATTTAAGATTTCGGGAAGCTGGACGGGGTTGTGTGGCTTTTGAAGCTTCCGCTCATAACGATGTCACGTTAGTGTTCCGAGAGAATGTGGGGAGTCAACATTACCATTACAAACGAGATAGCTGTCCTCATTATACGGTTATATTAGGTAGTCACCGAAATCGACGTCTAAGGATTATAGCCGATGGGAGAACTGTTGTTGATGAAGAGGGTGTTGCTCTTTGCAGTTCCTCTGCGTTCCAGAGCTATTGGATCAGTGTCTATGATGGTTTGATCAGCATTGGGAAGGGGAGATATCCTTTTCAGAATCTGGTCTTTCAATGGCTTGATACAAATCCAAACTGTAGTGTTCAATATATTGGGCTTAGTAGCTGGGATAAACACGTGGGATATAGAAATGTTAATGTTTTGCCGCCGACGCAGGACCATATTTCCTTGTGGAAGCATGTGGATAATGGCGTTGAAGGCGAAGAAGATGTGGAACTGGAGTTAGAAGATGAATACACAGATTACAAGAGCTGGGGCCTCGAACATTTTCTAGAAAATTGGGATTTATCAGATGTACTTTTTAGTGTAGATTCTGGGGAAACACTTGTACCTGCTCACAAGGCTATCTTAGTTGCTTCGGGAAATTTTCCCTTGAATTTGTCGCAAGATGTTGTGCAGCTACATGGAGTATCATATCCAGTTCTCCATGCTCTTCTTCAATATATTTACACAGGTCAAACTGAGTTCTACTTTGATATTTTGCTGTATGCGGAACTGCACCAAGTAGGCAATTTTAATCTCAACGCAGATACAATTCTAGAGTCTGAACTTGGTTCCTTGAGGGATCTTGCATTACAACTTGAAGTGAATGCTTTAGTGAACCAGTGTGATGACATGATGGAACAATTAAAACGGAACAAAAAGTTGTTGGACTCGGGTAAGAGGGTGGAATTATTATATCCAAGGATTCAGCCCCAGTGTACTACAGTCTTCCCCTCCGGGATTCCATTAAATGTGCAGAGGCTCAAACAATTGCAATGTACTGGCGAGTTCAGTGATGTATGTATTTATATACAAGGTCACGGGTTTGTTGCTCATGTGCACAAAATCATTCTTAGCTTATGGAGCATGCCATTTGAAAGGATGTTTACCAATGGAATGAGTGAAACAACGTCTTCTGAGGTGTATATTAGGGACGTATCACCAGAAGCTTTTCAAACCATGCTCAAGTTCATGTATAGTGGAGAACTCAGTAAAGATGTTACAATGGAATCTGATGTCTTGTTACTTCAACTACTATTTTTAGCTGATCAATTTGGTGTTACTCTTCTTCATCAAGAATGCTGCAAAATACTTCTAGAATGCCTTTCGGAGAGTATGTATTTAATTCTTTTGTTAATTTTTACGTGGATTTGTCATTATTTCTTATTGTACTTGTATGACTGGAAGATAAAAGGGGGAGCGTCATGCAGTTTCGAGGTTCTGAGAACAAAAGAAGAGAATCCTTTTATGATAATGAGTTATAGGAGGATGGAGTCTCCTAGTGGAAGATGGTCATACATCAAGATTTTTTGTTTATGCACAAGTTTAATGGACGAGGAAGCAGACAATTTTGGGAAAGTTGTAGGACTTGCTTCCGAAGCTAACTGTCGAACTTTGTTGCAGGATTCAGTATGTTCCATCCTTCAAGTTGTTTCATCAATTCCATGCTGTAAGCTCATTGAAGAAATTTGTGAGAGGAAGTTCTCAATGCACTTTGATTATTGTACGACTGCAAACATTGAATTTGTCATATTAGATGAGTCAACTTTCCGCAAAATCCTTCAGCTTATTTATGAAAATCATAATATGAACAAGAAAGGAAAGCCTGCGAAATACTTTTATGTCTATTTAGATGTTTTGGTCGTTGATCATCATTGGGTGAAGTGGTTCTTGCAGTGTCCTGATTTGACAGTGACGTCCGAGGAAAAAGTACTGAATGCAATCTTAATGTGGGGTTTAGAAGCAAGTGAATTATGTGGGTGGATGGCAGTAGATGAGCTTATGACATTTTCAACCCCTGATATCCTTTTTGGTGAGCGACTTCAGTCAGTTCAGGATTTGCTTTCTTTCGTGCGATTTCCGTTACTCCCATACGCCTTGTTGGAGAAGTTGGAGAACAGCAGCATTAGCAGGAAGATTCTTACCTTTCAGAATCTTGTGAAGGAGGCTATCGACTTCGTGAAACTTGAACCATCAAGGCTAGAGGACAAGAAAAAGAACAATGTGAGATTTCAACATCGACGGTCTAGTTATAAGGAGCTACAGTACATTTGTGATGGGGACAGCAATGGGGTTCTATTCTTTGCCGGTACATCATATGGAGAGCACCCATGGGTTAATCCCATTCTTTCTAAGAAAATTACTATTACGGCAAGCAGTCCACCTTCAAGGTACACAGATCCGAAGGTTCTGGTCTCGAGAACTTACCAGGGAACTTCATTTGCCGGCCCTCGCCTGGAAGATGGGCAAACTTATTCATGGTGGATGGTTGATATTGGTGAAGATCATCAGCTGATGTGCAATTACTATACACTGAGACAAGATGGGTCAAGAGCATTCATCAGATATTGGAATCTCCAGGGGTCAATCGATGGGAAAACTTGGACAAACTTGCGAGTACACGAGAACGATCAGACGGTGTGCAAGCCTGGTCAGTTTGCGTCGTGGCCCATAACTGGACCAAACTCTTTACTTCCATTTAGGTTCTTCCGTGTTCTTCTCACAGCCCCAACAACTGATGCTTCAAATCCGTGGAACTTGTGCATTTGCTTTCTGGAACTGTATGGCTACTTCCTCTAG 2892 41.25 MMDKKEKNSLTVAPFECAWLKDLRFREAGRGCVAFEASAHNDVTLVFRENVGSQHYHYKRDSCPHYTVILGSHRNRRLRIIADGRTVVDEEGVALCSSSAFQSYWISVYDGLISIGKGRYPFQNLVFQWLDTNPNCSVQYIGLSSWDKHVGYRNVNVLPPTQDHISLWKHVDNGVEGEEDVELELEDEYTDYKSWGLEHFLENWDLSDVLFSVDSGETLVPAHKAILVASGNFPLNLSQDVVQLHGVSYPVLHALLQYIYTGQTEFYFDILLYAELHQVGNFNLNADTILESELGSLRDLALQLEVNALVNQCDDMMEQLKRNKKLLDSGKRVELLYPRIQPQCTTVFPSGIPLNVQRLKQLQCTGEFSDVCIYIQGHGFVAHVHKIILSLWSMPFERMFTNGMSETTSSEVYIRDVSPEAFQTMLKFMYSGELSKDVTMESDVLLLQLLFLADQFGVTLLHQECCKILLECLSESMYLILLLIFTWICHYFLLYLYDWKIKGGASCSFEVLRTKEENPFMIMSYRRMESPSGRWSYIKIFCLCTSLMDEEADNFGKVVGLASEANCRTLLQDSVCSILQVVSSIPCCKLIEEICERKFSMHFDYCTTANIEFVILDESTFRKILQLIYENHNMNKKGKPAKYFYVYLDVLVVDHHWVKWFLQCPDLTVTSEEKVLNAILMWGLEASELCGWMAVDELMTFSTPDILFGERLQSVQDLLSFVRFPLLPYALLEKLENSSISRKILTFQNLVKEAIDFVKLEPSRLEDKKKNNVRFQHRRSSYKELQYICDGDSNGVLFFAGTSYGEHPWVNPILSKKITITASSPPSRYTDPKVLVSRTYQGTSFAGPRLEDGQTYSWWMVDIGEDHQLMCNYYTLRQDGSRAFIRYWNLQGSIDGKTWTNLRVHENDQTVCKPGQFASWPITGPNSLLPFRFFRVLLTAPTTDASNPWNLCICFLELYGYFL 963
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 262394 267408 + CmoCh09G000580.1 Cmo09g00058 388060

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo09g00058 963 Gene3D Potassium Channel Kv1.1; Chain A 354 475 IPR011333 -
Cmo09g00058 963 ProSiteProfiles BTB domain profile. 207 268 IPR000210 GO:0005515
Cmo09g00058 963 Pfam Farnesoic acid 0-methyl transferase 53 150 IPR022041 -
Cmo09g00058 963 Pfam F5/8 type C domain 820 952 IPR000421 -
Cmo09g00058 963 Gene3D Potassium Channel Kv1.1; Chain A 192 334 IPR011333 -
Cmo09g00058 963 Gene3D - 814 961 - -
Cmo09g00058 963 CDD BTB_POZ_ZBTB_KLHL-like 368 444 - -
Cmo09g00058 963 Pfam BTB/POZ domain 359 471 IPR000210 GO:0005515
Cmo09g00058 963 Pfam BTB/POZ domain 198 316 IPR000210 GO:0005515
Cmo09g00058 963 ProSiteProfiles BTB domain profile. 369 438 IPR000210 GO:0005515
Cmo09g00058 963 SMART BTB_4 369 473 IPR000210 GO:0005515
Cmo09g00058 963 SMART BTB_4 207 321 IPR000210 GO:0005515
Cmo09g00058 963 SUPERFAMILY POZ domain 355 470 IPR011333 -
Cmo09g00058 963 PANTHER OS05G0345500 PROTEIN 649 962 - -
Cmo09g00058 963 PANTHER OS05G0345500 PROTEIN 1 626 - -
Cmo09g00058 963 SUPERFAMILY POZ domain 195 317 IPR011333 -
Cmo09g00058 963 SUPERFAMILY Galactose-binding domain-like 805 962 IPR008979 -
Cmo09g00058 963 Gene3D - 645 758 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo09g00058 - - - csv:101222966 815.068
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo09g00058 Cmo-Chr9:262394 Cmo09g01056 Cmo-Chr9:5716181 1.08E-06 dispersed
Cmo09g00058 Cmo-Chr9:262394 Cmo11g00797 Cmo-Chr11:3941529 1.03E-06 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g100 Blo01g01634 Blo12g00855 . Bda03g00318 Bpe02g00311 Bpe04g00279 Bma04g00286 . . . . Cma09g00057 . . . Cpe06g00025 . . . . . . . . . . . . . . . Cone4ag2017 Cone7ag1933 . . Lsi04g01803 Csa04g02697 . . . . . . . . . . Sed01g2438 . Cmo09g00058 . . . Car09g00049 . . Bhi09g02894 Tan01g5102 Cmetu07g0710 . Hepe01g2337 Mch11g0535 . Cla11g01820 Cam11g1886 Cec11g1911 Cco11g1918 Clacu11g2050 Cmu11g1855 Cre11g2260 . . Chy07g00388 Cme07g00059
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008391 1 2 2 1 1 0 1 1 0 1 1 1 1 1 1 1 0 2 1 1 1 1 1 1 1 1 0 1 2 1 30
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10317 PF00754 F5_F8_type_C 3.20E-09 CL0202 Cmo TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo09g00058 Cmo_Chr09 FPKM 22.185633 27.174475 24.723269 20.859663 40.326927 32.033028 46.35043 24.956562 27.562046 33.763535