Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo09g00069 ATGGCGGTCTACGGCGGCGACGTTCCCGAAGTGGATCCAAGAAGCGGCTTCTGCAAATCCACGAAAATCTTCCACAGCAAACGCCGCCCAATCCCGCTTCCCCCTAATCAATCCCTCGATGCGACGACGTTTATCTCATCCCGCCCCCACAACGGAAAAATCGCCCTCATCGACGCCACCACCGGCCAACACATCACCTATTCCCACCTCTGGGAGTCTGTCGACTCCGTAGCCTCCTCCCTTTCTGACATGGGCATCAGAAAAGGCCACGTCATCCTCCTCCTTTCCCCAAACTCCATTTTCTTCCCCATTATTTGCCTCGCCGTCATGTCCCTCGGCGCCGTCATCACCACCACAAATCCCCTCAACACCCCTCAAGAAATCGCCAAACAGATCGCCGATTCCAACCCCATCTTAGCCTTCACCACCCAACAACTAATCCCCAAAATCGCCAGTTCCAAATTGCCAGTCGTTCTGATCGACGGTGAAATTCAAATTAAAAAATTCTCAGTCAAAATCGTGTCGACGCTGGGCGAAATGATGAGGAAAAAATCCAGTGGAAGTCGAGTTAAGGAGCGTGTGGACCAAAACGACACAGCGACTCTGCTTTACTCCTCTGGAACGACAGGGGCCAGCAAGGGCGTAGTGTCGTCTCACAAGAATCTAATTGCGATGGTTCAAGTCGTTGTGACGAGGTTCAAATTGAGCGAAGGGGAAGGGACTTTTATTTGTACGGTTCCGATGTTCCATATTTACGGCCTTGTGGCCTTCGCTACGGGGCTGCTCTCTTCTGGATCGACAATCGTCGTGTTGTCCAAATTCGAGATTCATGAAATGTTGTCGGCGATTGAGAAGTACAGAGCCACGTATCTGCCTCTTGTGCCGCCGATACTGGTGGCGATGGTGAACGCTGCCGAGCAGATAAAGGGAAAGTACGATTTGGGGTCGTTACACACGGCGTTGTCCGGCGGAGCGCCGCTCGGGAAGGAGGTGATTGAGGGTTTCGTTGAGAAGTATCCAAATGTTTCCATTCTTCAGGGATATGGATTGACGGAGTCCACAGGAATTGGGGCGTCCACCGATTCTCTGGAGGAGAGCCGCCGGTACGGCACGGCAGGGCTTCTATCGCCGAGCACCGAGGCCAAGATTGTTGACCCGGACACCGGCGAGGCTCTGCCTGTGAACAGAACCGGAGAGCTCTGGCTCAGAGGGCCCACCATCATGAAAGGGTATTTTGGTAATGTGGAGGCCACCACCTCAACTCTTGATTCTGAGGGATGGCTGAGAACCGGCGATCTATGTTACGTTGATGAAGATGGTTTTATTTTTGTGGTTGATCGCCTTAAAGAACTCATCAAATATAAGGGCTATCAGGTGCCTCCCGCAGAATTAGAGGCATTGTTGCTCACTCATCCCAGCATCTCCGATGCAGCTGTAATTCCATATCCAGACAAAGAGGTTGGACAGTATCCAATGGCCTACGTGGTCAGAAAGGGTGGAAGTGACATTTCACATGAAGATATAATGCAATTCGTGGCAAGACAGGTGGCTCCGTACAAGAGAATCCGGCGGGTTGCGTTCGTGGATTCCATTCCCAAGAACCCCTCCGGTAAGATTCTGAGAAAGGATCTCATAAAGCTCGCAACCTCCAAACTCTGA 1659 51.9 MAVYGGDVPEVDPRSGFCKSTKIFHSKRRPIPLPPNQSLDATTFISSRPHNGKIALIDATTGQHITYSHLWESVDSVASSLSDMGIRKGHVILLLSPNSIFFPIICLAVMSLGAVITTTNPLNTPQEIAKQIADSNPILAFTTQQLIPKIASSKLPVVLIDGEIQIKKFSVKIVSTLGEMMRKKSSGSRVKERVDQNDTATLLYSSGTTGASKGVVSSHKNLIAMVQVVVTRFKLSEGEGTFICTVPMFHIYGLVAFATGLLSSGSTIVVLSKFEIHEMLSAIEKYRATYLPLVPPILVAMVNAAEQIKGKYDLGSLHTALSGGAPLGKEVIEGFVEKYPNVSILQGYGLTESTGIGASTDSLEESRRYGTAGLLSPSTEAKIVDPDTGEALPVNRTGELWLRGPTIMKGYFGNVEATTSTLDSEGWLRTGDLCYVDEDGFIFVVDRLKELIKYKGYQVPPAELEALLLTHPSISDAAVIPYPDKEVGQYPMAYVVRKGGSDISHEDIMQFVARQVAPYKRIRRVAFVDSIPKNPSGKILRKDLIKLATSKL 552
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 306661 309130 + CmoCh09G000690.1 Cmo09g00069 388071
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo09g00069 552 Pfam AMP-binding enzyme 50 454 IPR000873 -
Cmo09g00069 552 Gene3D - 21 449 IPR042099 -
Cmo09g00069 552 Pfam AMP-binding enzyme C-terminal domain 463 538 IPR025110 -
Cmo09g00069 552 SUPERFAMILY Acetyl-CoA synthetase-like 44 550 - -
Cmo09g00069 552 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 11 551 - -
Cmo09g00069 552 ProSitePatterns Putative AMP-binding domain signature. 202 213 IPR020845 -
Cmo09g00069 552 CDD 4CL 33 544 - -
Cmo09g00069 552 Gene3D - 450 551 IPR045851 -
Cmo09g00069 552 PANTHER 4-COUMARATE--COA LIGASE-LIKE 3-RELATED 11 551 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo01g02061 Cmo09g00069 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo09g00069 Cmo-Chr9:306661 Cmo18g00200 Cmo-Chr18:1339080 1.63E-172 dispersed
Cmo01g00547 Cmo-Chr1:2706399 Cmo09g00069 Cmo-Chr9:306661 1.23E-155 transposed
Cmo02g01499 Cmo-Chr2:8761414 Cmo09g00069 Cmo-Chr9:306661 2.99E-52 transposed
Cmo04g01469 Cmo-Chr4:7516660 Cmo09g00069 Cmo-Chr9:306661 2.06E-158 transposed
Cmo08g00675 Cmo-Chr8:4333875 Cmo09g00069 Cmo-Chr9:306661 7.25E-40 transposed
Cmo14g00216 Cmo-Chr14:997716 Cmo09g00069 Cmo-Chr9:306661 5.26E-151 transposed
Cmo15g01155 Cmo-Chr15:8077062 Cmo09g00069 Cmo-Chr9:306661 2.56E-60 transposed
Cmo17g00077 Cmo-Chr17:403399 Cmo09g00069 Cmo-Chr9:306661 5.11E-19 transposed
Cmo19g00221 Cmo-Chr19:1483825 Cmo09g00069 Cmo-Chr9:306661 1.65E-163 transposed
Cmo01g02061 Cmo-Chr1:14389013 Cmo09g00069 Cmo-Chr9:306661 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo09g00069 K10526 - csv:101221396 993.03