Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo09g00078 ATGTCACCGCCGGCGAGGACCAAAAGCGGGAATGGCGGCGTAGATAAGCAGTATCCTCCGCCGCTTGCCACCCACGATGAAGTTGTTTCTGACCCCATTGTTTTTTGGGACACTTTGAGGCGTTTCCATTTTATGATGAACACAAAGTTCATGATTCCTGTGATTGGAGGGAAGGAGCTAGACTTGCATGTTTTATATTCAGAGGTTACAAGAAGGGGCGGGCACGAAAAGGTTGTTGCAGAGAAGAAATGGAGGGAAGTTGGAGGTGTCTTCAAGTTCTCTCCTACAACCACCAGTGCTTCCTTTGTATTGAGAAAACATTATCTCAGTCTTCTCTACCACTACGAGCAAGTTTACTTGTTCCGCCGCCAGGGCCCCATCTGCGCCCCTCAAGCGCCATTTTCTTTCGGTAGCCCTACCAGCGAAAACGAATTGGCTCTGGTGGAATATGCCCCCAAAACAACGTCGTTTTCGCCTGGTCCGCCTGCTGAAGTCACTGGAACAATTGATGGGAAATTCGATTGTGGCTACCTGGTGTCTGTGAAGTTGGGATCTGAGGTTCTGAGGGGAGTTCTTTACCATCCAGAGGAGCCTACCCCGTCGGATCTCCGGCCCCAACCTACCAACGCCATTGTACCGTACACTGGTACCACACATCGACACTCTGGTCGGCGGCACCGGAGGAGCCGGAGAAAGGGAGACCCCAACCACCCCAAACCAAACAGAAGTGGCTATAATTTCTTCTTTGCAGAGAAGCATTACAAGCTCAAATCTCTGTACCCTAACAGAGAGAGGGAGTTCACCAAGATGATTGGAGAGTCTTGGAACAACCTCAGCCCTGAAGAAAGGATGGTTTATCAAAACATTGGGCTGAAAGACAAGGAGAGGTACAAGAGAGAGTTGAAAGAGTACAAGGAGAAAATGAGGCTGGCAAGTGATGATGTTCATGCAGCTAACTATTCAAAACAGGGAGAGTAG 978 49.39 MSPPARTKSGNGGVDKQYPPPLATHDEVVSDPIVFWDTLRRFHFMMNTKFMIPVIGGKELDLHVLYSEVTRRGGHEKVVAEKKWREVGGVFKFSPTTTSASFVLRKHYLSLLYHYEQVYLFRRQGPICAPQAPFSFGSPTSENELALVEYAPKTTSFSPGPPAEVTGTIDGKFDCGYLVSVKLGSEVLRGVLYHPEEPTPSDLRPQPTNAIVPYTGTTHRHSGRRHRRSRRKGDPNHPKPNRSGYNFFFAEKHYKLKSLYPNREREFTKMIGESWNNLSPEERMVYQNIGLKDKERYKRELKEYKEKMRLASDDVHAANYSKQGE 325
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 365833 367975 + CmoCh09G000780.1 Cmo09g00078 388080
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo09g00078 325 CDD ARID_HMGB9-like 31 116 IPR045303 GO:0003677
Cmo09g00078 325 MobiDBLite consensus disorder prediction 213 244 - -
Cmo09g00078 325 Gene3D High mobility group box domain 222 316 IPR036910 -
Cmo09g00078 325 CDD HMGB-UBF_HMG-box 238 302 - -
Cmo09g00078 325 Pfam HMG (high mobility group) box 238 305 IPR009071 -
Cmo09g00078 325 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 15 316 - -
Cmo09g00078 325 Gene3D - 25 127 IPR036431 GO:0003677
Cmo09g00078 325 SMART hmgende2 237 306 IPR009071 -
Cmo09g00078 325 Pfam ARID/BRIGHT DNA binding domain 35 116 IPR001606 GO:0003677
Cmo09g00078 325 SUPERFAMILY HMG-box 235 308 IPR036910 -
Cmo09g00078 325 SMART bright_3 30 121 IPR001606 GO:0003677
Cmo09g00078 325 MobiDBLite consensus disorder prediction 1 23 - -
Cmo09g00078 325 Coils Coil 294 314 - -
Cmo09g00078 325 ProSiteProfiles ARID domain profile. 29 120 IPR001606 GO:0003677
Cmo09g00078 325 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 238 305 IPR009071 -
Cmo09g00078 325 MobiDBLite consensus disorder prediction 219 235 - -
Cmo09g00078 325 SUPERFAMILY ARID-like 25 127 IPR036431 GO:0003677
Cmo09g00078 325 SMART ARID_2 26 116 - -
Cmo09g00078 325 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 15 316 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo01g02054 Cmo09g00078 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo09g00078 Cmo-Chr9:365833 Cmo14g00611 Cmo-Chr14:3089146 5.71E-07 dispersed
Cmo08g00997 Cmo-Chr8:6460455 Cmo09g00078 Cmo-Chr9:365833 7.07E-88 transposed
Cmo17g00098 Cmo-Chr17:534796 Cmo09g00078 Cmo-Chr9:365833 6.25E-92 transposed
Cmo01g02054 Cmo-Chr1:14346966 Cmo09g00078 Cmo-Chr9:365833 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10318 PF01388 ARID 4.30E-18 CL0123 Cmo TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo09g00078 - - cpep:111797158 628.246