Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo09g00078 | ATGTCACCGCCGGCGAGGACCAAAAGCGGGAATGGCGGCGTAGATAAGCAGTATCCTCCGCCGCTTGCCACCCACGATGAAGTTGTTTCTGACCCCATTGTTTTTTGGGACACTTTGAGGCGTTTCCATTTTATGATGAACACAAAGTTCATGATTCCTGTGATTGGAGGGAAGGAGCTAGACTTGCATGTTTTATATTCAGAGGTTACAAGAAGGGGCGGGCACGAAAAGGTTGTTGCAGAGAAGAAATGGAGGGAAGTTGGAGGTGTCTTCAAGTTCTCTCCTACAACCACCAGTGCTTCCTTTGTATTGAGAAAACATTATCTCAGTCTTCTCTACCACTACGAGCAAGTTTACTTGTTCCGCCGCCAGGGCCCCATCTGCGCCCCTCAAGCGCCATTTTCTTTCGGTAGCCCTACCAGCGAAAACGAATTGGCTCTGGTGGAATATGCCCCCAAAACAACGTCGTTTTCGCCTGGTCCGCCTGCTGAAGTCACTGGAACAATTGATGGGAAATTCGATTGTGGCTACCTGGTGTCTGTGAAGTTGGGATCTGAGGTTCTGAGGGGAGTTCTTTACCATCCAGAGGAGCCTACCCCGTCGGATCTCCGGCCCCAACCTACCAACGCCATTGTACCGTACACTGGTACCACACATCGACACTCTGGTCGGCGGCACCGGAGGAGCCGGAGAAAGGGAGACCCCAACCACCCCAAACCAAACAGAAGTGGCTATAATTTCTTCTTTGCAGAGAAGCATTACAAGCTCAAATCTCTGTACCCTAACAGAGAGAGGGAGTTCACCAAGATGATTGGAGAGTCTTGGAACAACCTCAGCCCTGAAGAAAGGATGGTTTATCAAAACATTGGGCTGAAAGACAAGGAGAGGTACAAGAGAGAGTTGAAAGAGTACAAGGAGAAAATGAGGCTGGCAAGTGATGATGTTCATGCAGCTAACTATTCAAAACAGGGAGAGTAG | 978 | 49.39 | MSPPARTKSGNGGVDKQYPPPLATHDEVVSDPIVFWDTLRRFHFMMNTKFMIPVIGGKELDLHVLYSEVTRRGGHEKVVAEKKWREVGGVFKFSPTTTSASFVLRKHYLSLLYHYEQVYLFRRQGPICAPQAPFSFGSPTSENELALVEYAPKTTSFSPGPPAEVTGTIDGKFDCGYLVSVKLGSEVLRGVLYHPEEPTPSDLRPQPTNAIVPYTGTTHRHSGRRHRRSRRKGDPNHPKPNRSGYNFFFAEKHYKLKSLYPNREREFTKMIGESWNNLSPEERMVYQNIGLKDKERYKRELKEYKEKMRLASDDVHAANYSKQGE | 325 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 365833 | 367975 | + | CmoCh09G000780.1 | Cmo09g00078 | 388080 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo09g00078 | 325 | CDD | ARID_HMGB9-like | 31 | 116 | IPR045303 | GO:0003677 | |
Cmo09g00078 | 325 | MobiDBLite | consensus disorder prediction | 213 | 244 | - | - | |
Cmo09g00078 | 325 | Gene3D | High mobility group box domain | 222 | 316 | IPR036910 | - | |
Cmo09g00078 | 325 | CDD | HMGB-UBF_HMG-box | 238 | 302 | - | - | |
Cmo09g00078 | 325 | Pfam | HMG (high mobility group) box | 238 | 305 | IPR009071 | - | |
Cmo09g00078 | 325 | PANTHER | HIGH MOBILITY GROUP B PROTEIN 9 | 15 | 316 | - | - | |
Cmo09g00078 | 325 | Gene3D | - | 25 | 127 | IPR036431 | GO:0003677 | |
Cmo09g00078 | 325 | SMART | hmgende2 | 237 | 306 | IPR009071 | - | |
Cmo09g00078 | 325 | Pfam | ARID/BRIGHT DNA binding domain | 35 | 116 | IPR001606 | GO:0003677 | |
Cmo09g00078 | 325 | SUPERFAMILY | HMG-box | 235 | 308 | IPR036910 | - | |
Cmo09g00078 | 325 | SMART | bright_3 | 30 | 121 | IPR001606 | GO:0003677 | |
Cmo09g00078 | 325 | MobiDBLite | consensus disorder prediction | 1 | 23 | - | - | |
Cmo09g00078 | 325 | Coils | Coil | 294 | 314 | - | - | |
Cmo09g00078 | 325 | ProSiteProfiles | ARID domain profile. | 29 | 120 | IPR001606 | GO:0003677 | |
Cmo09g00078 | 325 | ProSiteProfiles | HMG boxes A and B DNA-binding domains profile. | 238 | 305 | IPR009071 | - | |
Cmo09g00078 | 325 | MobiDBLite | consensus disorder prediction | 219 | 235 | - | - | |
Cmo09g00078 | 325 | SUPERFAMILY | ARID-like | 25 | 127 | IPR036431 | GO:0003677 | |
Cmo09g00078 | 325 | SMART | ARID_2 | 26 | 116 | - | - | |
Cmo09g00078 | 325 | PANTHER | HIGH MOBILITY GROUP B PROTEIN 9 | 15 | 316 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cmo01g02054 | Cmo09g00078 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo09g00078 | Cmo-Chr9:365833 | Cmo14g00611 | Cmo-Chr14:3089146 | 5.71E-07 | dispersed | |
Cmo08g00997 | Cmo-Chr8:6460455 | Cmo09g00078 | Cmo-Chr9:365833 | 7.07E-88 | transposed | |
Cmo17g00098 | Cmo-Chr17:534796 | Cmo09g00078 | Cmo-Chr9:365833 | 6.25E-92 | transposed | |
Cmo01g02054 | Cmo-Chr1:14346966 | Cmo09g00078 | Cmo-Chr9:365833 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
10318 | PF01388 | ARID | 4.30E-18 | CL0123 | Cmo | TR |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo09g00078 | - | - | cpep:111797158 | 628.246 |