Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo09g00080 ATGGCCCCAAAGGAAGATGTTATCCTCAAGGTCAACAGTTTTGGAAATGGCGACAAGGAATTAGTGGAGAAGAAGTTCCAGTGTTTACCAGAGAGATCCTTGCAAACCATGAGACGAAGAGGTAAAGAATTTTCCGAGCCGGAAAACCGCCAGCCGTCCTCGGGCTCCAGCGGCGGCGAGGTTCTCCGTTGCAGTTCCAACTATTCGTTTTCTGGAAGTTCATGGAGCTCACCGATTAGCAAGAAGTCTCGGTTGATGGATCCTCCTGAGGATGATTCTTCTCAAAAGCTGGAAACCGCCGTGAAAGATGAGGGTAACAACAACAATAATCAAGACGGCACCGAGGATATGCCTGAAGAGTACAATCAACTGAAGTTAAGCCCCTTATTAGGTTTCCAGTTGGTAGTTTTTGTTCTCATTATTGTGAGTTTGATTTGTAATCGATGGATTTCAATCTTAAAGCGGGAGACGTTTTGGGGTCTTCCGCTGTGGAAATGGGAGTTGACTGTTCTAGCGGTAATCTGTGGACATATGGTTTCATCTATGGCCGTTGGATTGATGGTGAAAATCATCGAGATGAATTTCCTGTTAAGGAAACGGGTTCTGTATTTCGTTTATGGATTGAGAAAGGCTGTAAAAAATTGCCTGTGGATGTCTCTGATTTTGCTTGTTTGGCATTTCATCTTCAACGACAAGGTTCAGAGAAAGACGCAGAGTAAGATCTTGCCTTATGTCACCAAGATTTTGATCTGTTTTCTCGTGGCTGCTTCGATATGGCTTCTGAAAACGCTTGTCATTAAGATTCTGGCTTCGTTTTTCCACGTTAATAACTACTTCGAAAGGCTTAAGGAGGCTTTGTTCAGTCAGTACGTGATCGTGACGCTCTCTGGTTTGCCATTGTTTGAGAGGCCAAATTCTGAAGATATGATGAAGGATGAACAAATTGGCGATGGAAAAGCAGAAAGTTCCAAAAGTGGCAGAGTTGTATGCAGTGGCAGACTCGTAAATTGCAATGGCTGGAGACAATTGAAGGTAGAATCAAAAAGAAAAGATGAGGAAATCCCAGTTGATGAGTTAAATAAACTGAACCAGAAGAATATATCAGCTTGGAATATGAGGAGAATGATGAATATTGTAAGAAATGGAGCTTTGTTAACTCTTGATGAGAAGATACTGTCGGAGACGGAAGAACAATCTTTGTTGCAGATTAGGAATGAACGGCAGGCGAAAGAGGCAGCTGGGAGGATTTTCCGGCGAGTGGCCCAACGTGGGTCAGACTGTATTTATATAGAAGATGTAATGCGATTTATGAATAAAGAGGAAGCTTTAGTGACGATGAGTTTATTTGGAACAACCGCTGAAACTCAATGCATTGATGAGTCCTCTTTTAGAGAGTGGATGGTTAATGCATTTAAGCAGAGAAAAGTGCTTGTTCTATCTCTCAATGATGCAAATACAGCTGTTGATGATCTTCACAACTTGCTAAACGTCTTTGTAGCTTTAACAATTTTGGTAATCTGGCTTATCATATTTGGAACTCCCGTCTTGCACTTCCTCATCTTCATAACTTCACAGCTTCTTCTTCTAGCTTTTATTTTTGGCAACACATGTAAGACGGTCTTTGAAGCTATCATTTTCTTGTTTGTGATGCACCCATTCGACGTTGGCGATCGCTGCGAAGTGGACGGCGTCGAGGTGCAAAACTCTCTAGCCAAACAATTTGTTTTGCTCTTAATGGTTGTTGAAGAGATGAAGATATTAACAACAGTTTTCCTGAGATATGATAATCAAAGGATCAGCTACCCCAACAGTGTGCTGGCTACCAAAGCCATTGGCAATTACTACCGTAGTCCAGACATGGGAGAGGGAGTTGACTTCTATATCCACATCTCTACTCCATGGGAGAAACCGAAGTTGGGGGCGGCGGTCCACGGCCACGGCGATTACTTCAGACGGCGGCGCAGCAGTTCCCGACCATACCCGGAAACTGAAGAACCGCGCGGCGGTACCCTCCAGCGGCAGTCACGCGCAGTTCCACCACCTCCGACGCTTCCTGTAGCAGATCCGGCGGCGCGAACGTCAGCTCTCATCGGCAGCCCTGCAGTTCCACATTTCGGCATTGACGGTGAGTTCGATTTCGGCAGGAACAGTCAGATTCGCCACCTCCATAACGCACAGGCACCTCCGACGAACAGCGCAGACTGA 2205 44.99 MAPKEDVILKVNSFGNGDKELVEKKFQCLPERSLQTMRRRGKEFSEPENRQPSSGSSGGEVLRCSSNYSFSGSSWSSPISKKSRLMDPPEDDSSQKLETAVKDEGNNNNNQDGTEDMPEEYNQLKLSPLLGFQLVVFVLIIVSLICNRWISILKRETFWGLPLWKWELTVLAVICGHMVSSMAVGLMVKIIEMNFLLRKRVLYFVYGLRKAVKNCLWMSLILLVWHFIFNDKVQRKTQSKILPYVTKILICFLVAASIWLLKTLVIKILASFFHVNNYFERLKEALFSQYVIVTLSGLPLFERPNSEDMMKDEQIGDGKAESSKSGRVVCSGRLVNCNGWRQLKVESKRKDEEIPVDELNKLNQKNISAWNMRRMMNIVRNGALLTLDEKILSETEEQSLLQIRNERQAKEAAGRIFRRVAQRGSDCIYIEDVMRFMNKEEALVTMSLFGTTAETQCIDESSFREWMVNAFKQRKVLVLSLNDANTAVDDLHNLLNVFVALTILVIWLIIFGTPVLHFLIFITSQLLLLAFIFGNTCKTVFEAIIFLFVMHPFDVGDRCEVDGVEVQNSLAKQFVLLLMVVEEMKILTTVFLRYDNQRISYPNSVLATKAIGNYYRSPDMGEGVDFYIHISTPWEKPKLGAAVHGHGDYFRRRRSSSRPYPETEEPRGGTLQRQSRAVPPPPTLPVADPAARTSALIGSPAVPHFGIDGEFDFGRNSQIRHLHNAQAPPTNSAD 734
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 370101 374784 - CmoCh09G000800.1 Cmo09g00080 388082

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo09g00080 734 MobiDBLite consensus disorder prediction 100 117 - -
Cmo09g00080 734 MobiDBLite consensus disorder prediction 84 99 - -
Cmo09g00080 734 MobiDBLite consensus disorder prediction 48 81 - -
Cmo09g00080 734 Gene3D - 552 614 IPR023408 -
Cmo09g00080 734 MobiDBLite consensus disorder prediction 650 688 - -
Cmo09g00080 734 PIRSF Memb_At2g17000 16 638 IPR016688 -
Cmo09g00080 734 SUPERFAMILY Sm-like ribonucleoproteins 542 614 IPR010920 -
Cmo09g00080 734 Pfam Mechanosensitive ion channel 493 636 IPR006685 GO:0016020|GO:0055085
Cmo09g00080 734 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 37 636 - -
Cmo09g00080 734 MobiDBLite consensus disorder prediction 28 117 - -
Cmo09g00080 734 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 37 636 IPR016688 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo09g00080 K22048 MSL4S; mechanosensitive ion channel protein 4/5/6/7/8/9/10 - qsu:112009310 663.299
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo09g00080 Cmo-Chr9:370101 Cmo10g00779 Cmo-Chr10:3619191 6.52E-140 dispersed
Cmo09g00080 Cmo-Chr9:370101 Cmo20g00729 Cmo-Chr20:3614226 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g152 . . . Bda03g00302 . Bpe04g00264 Bma04g00266 . . . . Cma09g00081 . . . Cpe06g00045 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Sed10g2110 . Cmo09g00080 . . . Car09g00070 . . Bhi09g01887 Tan01g3346 Cmetu01g0289 . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0016415 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 1 0 0 1 0 0 0 0 1 1 0 1 1 0 0 8
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo09g00080 Cmo_Chr09 FPKM 4.797085 4.5912 4.417897 4.241414 8.021239 7.980737 7.22362 5.374452 5.885166 4.993314