Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo09g00083 ATGATGGACAAACAATCCAACCCAAAATCCAAAATCATGAAGTTTCTACCTAGAGCCGCCTCCGCCATCACTTTCCACAACCCGCCGGTCAGTCCCGGAAGGGAAAACCGGCCGGTCGCCGCCCGAGGATTTTCCGGTCCGATGAAGATCTCGATTATACCACGCGAAGCGCGATCCAAGTCCAACAACTCGGGGTTCGAAACGTCGGAGCCCACTTCGCCCAAAGTCTCCTGCATCGGCCAAATCAAACATAAGAAGAAGATGAAGGAATTGGCTAAGATTACTGCGGCGGCGGTTGAAATTTCGGAGCCGAAAAAGCGGCATCTCCCGTCGGCGATAGAGAGAATTCTGATCGGTAGGAAAGTACTAGGTAGGGCGAAATCGAACGTGGAGGCGGCTTCGGCGGGGAAGCCGCCGCTGCCGGAGAGAGCGCTAGGGCTGAATCAGATGAAGCGATTCTCGAGTGGACGTGGCGCTTTGACGAATTTTGATTGGACAGCGCAGATTGCTCCGGCTGAGGTGGAAGGAGAGGAGGGCGGGGGAGGAGGGAGCAGGGCGTCGACGGCGGTGTGGATTGGTGAAGAAATTGTGACACTTGAACCGAGAAAGGAGGTGAATATATGGAAGAGAAGAACCGTTGTTCCGCCCACACCTCTTCAACTCCACTCCACCATGGTTCGACAAAAAACATAG 693 54.4 MMDKQSNPKSKIMKFLPRAASAITFHNPPVSPGRENRPVAARGFSGPMKISIIPREARSKSNNSGFETSEPTSPKVSCIGQIKHKKKMKELAKITAAAVEISEPKKRHLPSAIERILIGRKVLGRAKSNVEAASAGKPPLPERALGLNQMKRFSSGRGALTNFDWTAQIAPAEVEGEEGGGGGSRASTAVWIGEEIVTLEPRKEVNIWKRRTVVPPTPLQLHSTMVRQKT 230
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 381353 382045 - CmoCh09G000830.1 Cmo09g00083 388085

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo09g00083 230 Coils Coil 229 230 - -
Cmo09g00083 230 PANTHER OS09G0542900 PROTEIN 2 223 IPR038796 -
Cmo09g00083 230 MobiDBLite consensus disorder prediction 56 76 - -
Cmo09g00083 230 MobiDBLite consensus disorder prediction 54 76 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo09g00083 - - - cmos:111443719 440.654
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g02051 Cmo-Chr1:14335242 Cmo09g00083 Cmo-Chr9:381353 5.56E-94 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g161 . . . . Bpe02g00334 . . Bma01g02386 . . . Cma09g00084 . . . Cpe06g00048 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cmo09g00083 . . . Car09g00073 . . . . . . . . . Cla05g01597 Cam05g1708 Cec05g1708 Cco05g1765 Clacu05g1695 Cmu05g1584 Cre05g1702 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008389 2 0 2 2 2 1 2 1 1 1 1 1 1 1 1 2 1 0 2 1 1 1 1 1 1 1 1 1 1 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo09g00083 Cmo_Chr09 FPKM 124.106186 144.090469 0.537515 0.724051 0.083785 0.049799 0.0 0.466916 0.165686 0.073933