Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo09g00086 ATGAAGGATGGAAATCGAGCTCTGACGAACGGCGGCTCTTACGGATCTTCCAGATTCTCCTCTCTTTTGGCTTCTGGAGATCGTGACTATCTCGTCTCTTCCACCGGAGCTCAGGTCAAACTGTCGAATCTCGACGGTAAGGTCCTGGGCCTTTACTTCTCTGCCAACTGGTACCCGCCATGTCGGAGCTTCAACAAGATTCTGGTCCAAACTTACGAGGAGCTCCAAGAAAATGGGTCGAATTTTGAAGTGGTTTATGTGTCCTCCGACGAGGATTCCGACGCCTTCAATGAGTACCGTGCGAGTATGCCGTGGCCGGCGATTCCATTCTCCGACTTGGAAACCAAAATTGCTTTGAACAGGAAATTCGAGATTGAAGGCATTCCGTGTCTGATTATATTGCAGCCGCGTGAAAATAAAGATGAAACGGCGACGTTGCATGAAGGAGTGGAGGTTGTTTACCGATATGGGGTCGATGCATTTCCCTTTACAAAGGAGAGATTGGAGCAGCTGAAGGATGAGGATAGAGAAAAGGAAGAGAATCAGACATTGTCTACTTTGCTGACAAATGGCAACAGAGATTATCTTTTGGATTACCCTATCCCGAAACAGGTCCCTGTTGTTTCATTAGTAGGCAAGACCGTGGGGCTCTACTTCTCGGCGAAATGGTGTCTTCCCGGTATGTTCACGCCCAAGCTGATTGCTGTCTACGACAAGATAAAGCAAATGGTAGCAACGAAAGAAAACGAAGATTTCGAGATTGTTTTTGTGTCGAGTGATCGAGACAAGGACTCCTTCAATTCTTACTTCGGTTCGATGCCGTGGCTAGCATTGCCATTTGGAGACCCAATGATTAAAAACCTTGCCAAACATTTTGACGTGCAAGGCATCCCTTGTTTGATAATCTTAGGTCCAAATGGCAAGACAGTCACCAAACAAGGTAGAAACCTAATAAACTTGTACAGGGAAAATGCTTATCCATTCACCGAAGCTAAATTGGAGGAGCTGGTGAAAGAAAAGGAGGAAGAGGCGAAAAACCTCCCGACGTCGGTGCGCCACGTCGGACATAGACACGAGCTGAATTTGGTGTCTGAAGGAAATGGGGGAGGACCGTTCATATGCTGCGAGTGTGACGAGCAGGGTTGTGGATGGGCTTATCAGTGCCTGGATTGTGGATTCGAGGTGCATACAAAGTGCGTCGAGACGAGCAACCGCGACTCTCCCTTCAATGGGAGGTGA 1239 47.86 MKDGNRALTNGGSYGSSRFSSLLASGDRDYLVSSTGAQVKLSNLDGKVLGLYFSANWYPPCRSFNKILVQTYEELQENGSNFEVVYVSSDEDSDAFNEYRASMPWPAIPFSDLETKIALNRKFEIEGIPCLIILQPRENKDETATLHEGVEVVYRYGVDAFPFTKERLEQLKDEDREKEENQTLSTLLTNGNRDYLLDYPIPKQVPVVSLVGKTVGLYFSAKWCLPGMFTPKLIAVYDKIKQMVATKENEDFEIVFVSSDRDKDSFNSYFGSMPWLALPFGDPMIKNLAKHFDVQGIPCLIILGPNGKTVTKQGRNLINLYRENAYPFTEAKLEELVKEKEEEAKNLPTSVRHVGHRHELNLVSEGNGGGPFICCECDEQGCGWAYQCLDCGFEVHTKCVETSNRDSPFNGR 412
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 388605 393156 - CmoCh09G000860.1 Cmo09g00086 388088

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo09g00086 412 Pfam C1 domain 356 400 IPR004146 -
Cmo09g00086 412 ProSiteProfiles Thioredoxin domain profile. 20 152 IPR013766 -
Cmo09g00086 412 ProSiteProfiles Thioredoxin domain profile. 173 338 IPR013766 -
Cmo09g00086 412 SUPERFAMILY Cysteine-rich domain 346 401 IPR046349 -
Cmo09g00086 412 PANTHER THIOREDOXIN 16 399 - -
Cmo09g00086 412 SUPERFAMILY Thioredoxin-like 205 312 IPR036249 -
Cmo09g00086 412 Pfam Thioredoxin-like 212 308 IPR012336 -
Cmo09g00086 412 Pfam Thioredoxin-like 46 137 IPR012336 -
Cmo09g00086 412 SUPERFAMILY Thioredoxin-like 31 136 IPR036249 -
Cmo09g00086 412 Gene3D Glutaredoxin 194 329 - -
Cmo09g00086 412 Gene3D Glutaredoxin 24 165 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo09g00086 K17609 NXN; nucleoredoxin [EC:1.8.1.8] - csv:101212204 736.873
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo05g00645 Cmo-Chr5:3259218 Cmo09g00086 Cmo-Chr9:388605 5.90E-26 dispersed
Cmo09g00086 Cmo-Chr9:388605 Cmo09g01255 Cmo-Chr9:10889455 1.45E-30 dispersed
Cmo09g00086 Cmo-Chr9:388605 Cmo01g00916 Cmo-Chr1:5154252 2.33E-35 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g172 . Blo12g00875 . . . Bpe04g00258 Bma04g00259 . . . . Cma09g00088 . . . Cpe06g00051 . . . . . . . . . . . . . . . . . . . Lsi04g01774 . Chy04g00395 . . . . . . . . . . . Cmo09g00086 . . . Car09g00076 . . . . . . . . . Cla05g01601 Cam05g1712 Cec05g1712 Cco05g1769 Clacu05g1699 Cmu05g1588 Cre05g1707 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012145 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 1 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo09g00086 Cmo_Chr09 FPKM 3.39646 1.998278 3.172541 4.066663 3.654593 3.394504 4.027975 8.441424 8.770468 7.867848