Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo09g00091 ATGTTATCGGTTGCAATTGAAGACGAAGAGAAATGGCTGGCGGAAGGAATCGCTGGAATTCAACACAATGCCTTCTACATGCATCAAGCCGTGGACGCGAACAATCTCAGAGAAGCCCTCAAATACTCGGCTCTGATGCTTTCGGAGCTTCGAACTTCGAAGCTTTCACCACATAGATATTACGAACTCTATATGCGAGCCTTTGACGAATTGAGGATGTTGGAGATATTTTTTAAGGACGAAAGTAGGCATGGCGTAACGGTCGTCGATCTGTACGAACTCGTGCAACACGCCGGGAATATATTGCCCAGACTGTATCTCCTTTGTACGGTTGGCTCAGTCTACATGAAATCTAAGGAGGTCCCGGCGAAGGAGATCCTCAAAGATCTCGTGGAAATGTGTCGTGGAGTTCAACATCCATTACGTGGTCTCTTTCTTAGAAACTATCTAGCACAAGTCAGTAGGGACATATTGCTAGATATTAATTCTGAGTGCGAAGGCGATGCTGACACTGTCATGGAGGCCGTAGAATTTGTGCTACAAAATTTTACTGAAATGAATAAACTTTGGGTGCGAATTCAGCTTCAGGTGTTATGGTGTGGACCTGCTCGGTTGAGAGAGAAGCAGGAAAAAGAGAGAAGCGAACTTCGTGATCTTGTTGGAAAGAATCTCCATGTTCTCAGTCAGATAGAGGGTGTGGACCTTGAAATGTACAAGCAGACTGTTCTTCCTAGAGTCTTGGAGCAGGTGGTCAACTGCAAAGATGAGTTATCTCAGTACTATCTGATGGATTGTATTATTCAGGTGTTTCCAGATGAATACCATTTACAGACGCTTGAGACATTGTTGGGTGTTTGCCCGCAGCTTCAGGCAACTGTTGACATCAGGATGGTTCTTTCTCAATTAATGGATAGACTATCAAACTATGCTGTTTCAAATGCAGACGTAATACCTGAATTTCTGCATGTAGAAGCCTTCGCTAAGTTGAGCAATGCTATTGGGAAGGTAATAGAAGCACAGGTTGACATGCCTATTGTTGGAGCTATAACATTGTATGTCTCTCTTCTGTCATTTACCCTTCGTGTTCATCCGGATCGGCTTGATTATGTGGACCAAATATTGGGAGCGTGCGTTAAAAAACTCTCCAGCCAACCAAAGCTTGAAGATACCAGAGCAACAAAGCAAATAGTTGTGCTTCTCAGTGCTCCATTAGAGAAATATAATGATATTGTGACAGCTCTTACACTCTCAAATTATCCTCGTGTCATGGACCACCTGGACAATGCCACAAACAAAGTTATGGCCATGGTCATTATTCAAAGTATAATGAAAAATAACTCTTGCATTTCTACTGCTGATAAGGTTGACGTGTTGTTTGAACTAATAAAAGGGCTTATCAAGGACTTGGAAGAAGTTACTGTCGATGAGCTTGACGAAGAGGATTTCAAGGAAGAGCAAAATTCTGTTGCCCGCCTCCTACACATGCTACATAACGATGACCCAGTGGAAATGTTAGAGATTATCTGTGCCGTGAAGAAGCACATATTGTGTGGAGGACCAAATCGCCTGCCTTTCACTGTTCCTCCCCTGATATTTTCTGCCCTCAATTTAATTAGACGGTTACAAAATCAAAATGGGGATGTGGTAGAAGAAATGCATGCTACACCAAAGAAAATATTTCAGATTTTAAATCAGCTTATCGAGGCGCTTTCCTCTGTTCCAGCTCCTGAATTGGCACTAAGGTTATACCTGGAATGTGCTGAGGCAGCTAATGACTGTGACCTTGAACCTGTTGCGTACGAATTCTTTACTCAAGCATTTATAATCTATGAGGAAGATATTTCGGATTCTAAGGCTCAAGTGACTGCAATACACCTTATTATTGGGACTCTGCAGAGGATGAATGTGTTTGGCATTGAGAACAGAGATACTTTGACACACAAAGCTACTGGGTATTCTGCGAAGCTTCTAAAGAAACCAGATCAGTGTAGGGCTGTTTATGCATGCTCGCATCTCTTTTGGGTTGATGATCCAGAAGGCATTAAGGATGGAGAGAGAGTTCTTCTTTGCCTAAAACGTGCCCTACGAATTGCAAATGCTGCTCAACAGATGGCTACTGTTACACGGGGCAGCAGTGGACCCGTCACACTTTTTGTTGAAATACTGAACAAGTACCTCTACTATTTCGAGAAAGGAAACCAGCAGATTACAACCGCTGCAATTCAAGGGTTGATTGAATTAATAACAACTGAATTGCAGAGTGACCTCCCGAGCGCCGGTCCTTCTTCAGATGCTTTCTTTACCAGCACACTTCGCTACATTCAGTTCCAGAAACAGAAAGGTGGTGTGATGGGTGAAAGATATGATTCCATCAAGCTTTTAGTATTGAAGGAAATTCTATGTTTGTTATTCTATTCGCAGCCCCTTGTATATGTAATCTTTGTTTCTAACGTAGTTGGAAGGAATCCAAATCTCTCATTCGTAGCTTCATCGGCACCGACGATGCAGAACGGAGATTACGGTACAGCTCCGTATTTCCAATACCAAAATTTTCAAAACCTTACCCTTAATCCTAGCCCTAATCCAGTTCCCATTCCCCCCGATCGCAACCAGAGCGCTTACGCCTCGGCGCCGCCCTTCTCCACCAATTATGCTGCCTCCGATTACCCTGGCTATGCCCCTTATTATCCCCCCTATTCCCAGAATCCCGATCCCCTCCCTGCCTCTCCGACTGCGCCTCTTTTCAACTCTCCCTCATCCAATTCTAATCCCCAGACATTCATTCCCACTCCTCAATCACCCGCTTTCCCTCCATTTGAGTCTCATGTGCCTTATCAATCTCCTTCTCAGTCGCAATCGTATCACTCAACCTACGATCAGCATCAGACGGCTCCCAATTGTGCTCCCCCTCCACCTTCCTCAATTCCCATGAATCAGAGCTCTAATTCTACCCCTACTGCTAATTCTCCGTTCTCATCCATGTATTCGGCTCCCTTTGGCTCTTTGGCACCCCCGTCGTATGAAAATCCATATGAAAGTTCGGTTAAATTTGATCAGGGAGGCGGATATGCTGATGATAGATATGGAGGTTACGGTCGAAGTCGGTCTGATTTTGGTTCGGAGTTGTACGGAAAGCGGCCGGAGGACGCGGCACCGCGCTTCGACTCTGGCTATGATGACGGTTATGGCGATGGAGTCTATGCTTACCAAGGTGGCAAAGTTGAGCCTTATGGAGCTCGTGGTACGGCTTCTAAGTCTTCGACGTGGTCTGCCGCGACGCCTGCTTTTGACGATTATGGGAGGCCGATAAATATTCCTCCGAAAAAAGATCCGCCGGCGAGTTCACTGAAAGTAGTTAGGGCGATCCCTAAGGTGGAAGCTCAAGAAGACGTCAAAAATTGGGTGCAGAAGTTCCGGGTGAAGCTCTTGGCTGAAAGTGGAGGTCAGAGCACCATGGATGTACTTTGTCAGGTTGGTCTAGATGGCATTCGTATGCTTGATCCAAATTCTAGTCGAACGTTAAGGATATATCCTCTTGAGACCATCACTAGATGTGAAGTGTATGATTCTTCTACCCTGGCTTTCTGGTCCAAGAGCTCTGTGGATATTGAGCCACGGCGTATTAGATTACAGTCAAACAAGTACACCACCAACACGCTTCTGGACACGGTGACTGCTGCAACTGTACAGTTTAAGGAAATGGGTGGAAGAAGTAGGCCTTCTGAATCTTTTAAGGCGCCTGAGCAGCCTACAGAGAAGAAGAAAGGGTTGGTTGATTGGGTGAACCTGATAAAACCAGGCAACGAGGAGAAAGATCATTGGGTACCTGATGAAGCAGTCACGAAGTGTACAGCCTGTGGGTCAGACTTTGGGGCTTTTGTCCGAAGGCATCACTGCAGAAATTGTGGAGACATCTTCTGTGATAAATGTACGCAAGGTAGAACAGCTCTGACTGCTGAGGAGAATGCTCCTCAAGTTCGAGTTTGTGACAGATGCATGGCGGAAGTGACTCAGAGGCTCGCTAATGCCAAGGATCTGACTAGTAATCCTGTAGGGTTGCATAGCCATGAGGATCTTGCCAAAAAACTTAAGGATGAAATGGAGAGAAACCGTAGGTCATCAGGATCCAAGTCTGATGGATCTGGGAAACGTATGAAGGAAGTTGCATGTCCTACTTGTACTGTGCATTTACAGGGGATTCCAAATAATGTTGTATTCAAGTGTGGTGGAGATTGTGATTGCCATGAAATCTTGATCAACACACGGTGCAGGTTCCAAGCTCAGGTTCCGAGACCATTGAGTGTGGGGTTTGCCAGCATCCATTCCTTGTCAGCGCTCACTGACTCCACCGTTCGTTTAGGGATGTGGTTTGGGGTAGAGTGGCTTCTTCATTATCATATTTTCCTAATAATTGGGCTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGAAGGCCTCGAGCCTCTATAATTTGATGTCAGTTGTGATTCCGTACTATTGTTTTGTAAATGGAGTTTGTCTTTGTGAAACACACGGCTATTTTATATTATAA 4554 45.02 MLSVAIEDEEKWLAEGIAGIQHNAFYMHQAVDANNLREALKYSALMLSELRTSKLSPHRYYELYMRAFDELRMLEIFFKDESRHGVTVVDLYELVQHAGNILPRLYLLCTVGSVYMKSKEVPAKEILKDLVEMCRGVQHPLRGLFLRNYLAQVSRDILLDINSECEGDADTVMEAVEFVLQNFTEMNKLWVRIQLQVLWCGPARLREKQEKERSELRDLVGKNLHVLSQIEGVDLEMYKQTVLPRVLEQVVNCKDELSQYYLMDCIIQVFPDEYHLQTLETLLGVCPQLQATVDIRMVLSQLMDRLSNYAVSNADVIPEFLHVEAFAKLSNAIGKVIEAQVDMPIVGAITLYVSLLSFTLRVHPDRLDYVDQILGACVKKLSSQPKLEDTRATKQIVVLLSAPLEKYNDIVTALTLSNYPRVMDHLDNATNKVMAMVIIQSIMKNNSCISTADKVDVLFELIKGLIKDLEEVTVDELDEEDFKEEQNSVARLLHMLHNDDPVEMLEIICAVKKHILCGGPNRLPFTVPPLIFSALNLIRRLQNQNGDVVEEMHATPKKIFQILNQLIEALSSVPAPELALRLYLECAEAANDCDLEPVAYEFFTQAFIIYEEDISDSKAQVTAIHLIIGTLQRMNVFGIENRDTLTHKATGYSAKLLKKPDQCRAVYACSHLFWVDDPEGIKDGERVLLCLKRALRIANAAQQMATVTRGSSGPVTLFVEILNKYLYYFEKGNQQITTAAIQGLIELITTELQSDLPSAGPSSDAFFTSTLRYIQFQKQKGGVMGERYDSIKLLVLKEILCLLFYSQPLVYVIFVSNVVGRNPNLSFVASSAPTMQNGDYGTAPYFQYQNFQNLTLNPSPNPVPIPPDRNQSAYASAPPFSTNYAASDYPGYAPYYPPYSQNPDPLPASPTAPLFNSPSSNSNPQTFIPTPQSPAFPPFESHVPYQSPSQSQSYHSTYDQHQTAPNCAPPPPSSIPMNQSSNSTPTANSPFSSMYSAPFGSLAPPSYENPYESSVKFDQGGGYADDRYGGYGRSRSDFGSELYGKRPEDAAPRFDSGYDDGYGDGVYAYQGGKVEPYGARGTASKSSTWSAATPAFDDYGRPINIPPKKDPPASSLKVVRAIPKVEAQEDVKNWVQKFRVKLLAESGGQSTMDVLCQVGLDGIRMLDPNSSRTLRIYPLETITRCEVYDSSTLAFWSKSSVDIEPRRIRLQSNKYTTNTLLDTVTAATVQFKEMGGRSRPSESFKAPEQPTEKKKGLVDWVNLIKPGNEEKDHWVPDEAVTKCTACGSDFGAFVRRHHCRNCGDIFCDKCTQGRTALTAEENAPQVRVCDRCMAEVTQRLANAKDLTSNPVGLHSHEDLAKKLKDEMERNRRSSGSKSDGSGKRMKEVACPTCTVHLQGIPNNVVFKCGGDCDCHEILINTRCRFQAQVPRPLSVGFASIHSLSALTDSTVRLGMWFGVEWLLHYHIFLIIGLLSLSLSLSLSLKASSLYNLMSVVIPYYCFVNGVCLCETHGYFIL 1517
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 419432 437410 - CmoCh09G000910.1 Cmo09g00091 388093

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo09g00091 1517 MobiDBLite consensus disorder prediction 1363 1384 - -
Cmo09g00091 1517 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 1277 1337 IPR017455 -
Cmo09g00091 1517 MobiDBLite consensus disorder prediction 896 912 - -
Cmo09g00091 1517 Gene3D - 470 778 IPR042491 -
Cmo09g00091 1517 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1264 1342 IPR013083 -
Cmo09g00091 1517 Coils Coil 1353 1373 - -
Cmo09g00091 1517 Pfam Vacuolar protein sorting-associated protein 35 12 750 IPR005378 GO:0015031|GO:0030906|GO:0042147
Cmo09g00091 1517 MobiDBLite consensus disorder prediction 896 989 - -
Cmo09g00091 1517 PANTHER VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 35A 5 792 - -
Cmo09g00091 1517 MobiDBLite consensus disorder prediction 857 877 - -
Cmo09g00091 1517 MobiDBLite consensus disorder prediction 943 964 - -
Cmo09g00091 1517 Pfam FYVE zinc finger 1273 1337 IPR000306 GO:0046872
Cmo09g00091 1517 CDD FYVE_EEA1 1274 1336 - -
Cmo09g00091 1517 MobiDBLite consensus disorder prediction 913 929 - -
Cmo09g00091 1517 PANTHER VACUOLAR SORTING PROTEIN 35 5 792 IPR005378 GO:0015031|GO:0030906|GO:0042147
Cmo09g00091 1517 SUPERFAMILY FYVE/PHD zinc finger 1272 1348 IPR011011 -
Cmo09g00091 1517 SMART fyve_4 1269 1338 IPR000306 GO:0046872
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo09g00091 K18468 VPS35; vacuolar protein sorting-associated protein 35 - csv:101213893 1464.51
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo01g02041 Cmo09g00091 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo06g00116 Cmo-Chr6:660657 Cmo09g00091 Cmo-Chr9:419432 0 dispersed
Cmo09g00091 Cmo-Chr9:419432 Cmo16g01295 Cmo-Chr16:9217504 0 dispersed
Cmo13g00608 Cmo-Chr13:6671160 Cmo09g00091 Cmo-Chr9:419432 4.30E-09 dispersed
Cmo18g00413 Cmo-Chr18:2707997 Cmo09g00091 Cmo-Chr9:419432 6.75E-09 dispersed
Cmo01g02042 Cmo-Chr1:14303409 Cmo09g00091 Cmo-Chr9:419432 0 transposed
Cmo03g00530 Cmo-Chr3:5423713 Cmo09g00091 Cmo-Chr9:419432 1.30E-10 transposed
Cmo17g01107 Cmo-Chr17:9089774 Cmo09g00091 Cmo-Chr9:419432 9.58E-06 transposed
Cmo01g02041 Cmo-Chr1:14293800 Cmo09g00091 Cmo-Chr9:419432 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1148 Blo01g01607 . Bda01g00474 . . . . Bma01g02380 . . Cma01g01983 Cma09g00094 Car01g01554 . . Cpe06g00056 . . . . . . . . . . . . . . . . . . . . Csa03g04293 Chy04g00403 . . . . . . . . . Sed01g2488 Cmo01g02041 Cmo09g00091 . . . Car09g00081 . Cpe02g00062 Bhi09g02073 Tan01g5039 Cmetu04g2094 . Hepe01g1603 Mch11g0102 . . . . . . . . . . . Cme04g00456
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0025118 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo09g00091 Cmo_Chr09 FPKM 48.029331 53.632862 289.744568 299.143463 13.496874 12.631612 13.22783 1.170951 1.050979 0.795564