Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo09g00092 ATGGAGATTGGGTCCAATGGGGGATCAGACCAAGACCCACCTCCCAAAATGGAGGAACAAGAAGAGAAACCAAGCAAGAAGATAAGTGTTTCCTTTTTTGGTATGTTTGCTGCTGCTGATGCAATTGATTGTTTGTTGATGCTGTTTGGAAGCTTAGGAGCGTTTGTTCATGGGGCTGCTCTTCCTGTTTTCTTTGTTCTGTTTGGTCGGATCATCGATTCTTTGGGACATTTTTCCAGACATCCCCATACACTGTCTTCTCGTATTGCTGAAAATGCTTTATTCTTGATCTATCTTGGCCTCATTGTGTTGGCATCAGCATGGATAGGTGTGGCTTTTTGGATGCAAACGGGAGAGAGGCAGGCGGCAAGGTTGAGAATGCAGTATCTCAACTCAATTTTGAAGAAAGATATACACTTTTTCGACACGAAGGCCAAAGATTGCAACATAATCTTCCATATCTCAAGTGATATGGTTCTGGTTCAAGATGCCATAGGCGACAAGATAGGCCATGCTTTGCGTTATTTCTCCCAATTCGTTGTTGGGTTTGGCATTGGATTTACATCAGTTTGGAAACTGACGCTTCTGACTTTGGCCATTGTTCCATTGGTAGCCATTGCAGGAGGTGCATACACAATCATCATGTCCACTCTATCTGAAAAAGGTGAAGCTGCCTATGCTCAAGCTGGAAACGCAGCTGAAGAGGTTATTGCACAGATTCGAACAGTGTACGCATATGTAGGAGAAAGTAAAGCCGTGGAGAAATATTCCGAGTCGCTTCAAAATGCATTGAAACATGGGAAGAGGAGTGGTTTTGCTAAAGGAATTGGCGTGGGGTTTACATACAGTCTTCTGTTTTGTGCCTGGGCTTTGCTCCTCTGGTATGCCAGCCTACTCGTCCTCCGCCACGAAACAAATGGAGGGAAAGCTTTTACGACGATCATCAATGTCATCTTCAGTGGATTTGCGCTCGGTCAAGCTATGCCGAATCTCGCTGCCATCGCAAAAGGTCGGGTGGCTGCAGCCAACATCTTTAGCATGATTGACTCAGGTTATGAATCATGGTCGAGGTCGGATAATGAAGTAGCATTGTCAAATATAGCAGGGAAGATTGAGTTTTCTGAGGTTTCCTTTGCTTATCCCTCCCGACCCCAACTGATTTTTGAGGAGTTAAGCTTCTCAATAAGTGCTGGAAAGACAGTTGCAGTTGTTGGCCCCAGTGGCTCAGGAAAGAGTACCATTGTTTCCATGGTTCAGCGTTTCTACGAACCATCTTCAGGTAAGATACTATTGGATGGATATGATCTTAGGTCTCTTGATTTGAAATGGTTGAGAAGGCAAATGGGGTTGGTTAGTCAAGAGCCTGCCTTGTTTAGTACCACAATAGCTGCCAATATTCTTTTTGGTCAAGAACATGCAGCCATGGATGAGATCATTGCAGCTGCTCAAGCTGCAAATGCTCATTCCTTCATTCAAGAACTACCAGATGGTTACTCAACTCCGGTCGGAGAGGGAGGGACGCAGCTTTCAGGTGGGCAAAAGCAGAGGATTGCCCTTGCAAGGGCAGTTTTACGAAATCCAAAAATATTACTTCTAGATGAGGCAACCAGTGCTCTTGATGCAGAATCAGAACTCATTGTTCAGCAGGCACTGGACAGAATCATGTCGAATCGAACGACGATCATCGTTGCGCATCGACTTTCCACAATTCGAGATGCCGATACCATCACTGTCCTGAAAAACGGTCAAATTGTTGAGAGTGGAAATCATTCAGAATTGATGTCAAACAATGGTGAGTATGCAGCTCTAGTAAGCTTGCAAGTATCAGACCAAGTGAATGATTGTAGCATAATATCTCCATCTAGGAGTTCCGGGCGTTCTAGTTTTCGAGAATCTTTTAGCTTTCATAACAGTATACAAGATTCCAAGTCATTCAGAGAGACTGAGCTACAATCAGCCAACAAAGATTCAAAAACTTCGAATTCTCCTCCGTCGATATGGGAGCTACTGAAGCTAAACGCACCCGAGTGGCGTTATGCAGTACTAGGATCGATCGGGGCAATTCTTGCAGGCATTCAAGCTCCTTTGTTTGCACTTGGCATAACCCATGTCCTATCTGCATTTTATTCTCCTCATCATTCTCAAATCAAAGAAGAGGTCCAACATGTCGCCTATGTGTTTGTTGGAGTTGCTATTCTCACCATTCCTATATATCTGTTGCAACACTACTTCTATACCTTAATGGGAGAGAGACTTACCGCTCGTGTTCGTTTGCTGTTATTCTCAGCTATCCTTTCCAACGAAGTTGGTTGGTTTGATTTAGATGAGAACAACACTGGATCCTTGACATCAATCTTGGCATCCGATGCAACGTTAGTAAGAAGTGCTCTGGCTGACCGTATATCGACGATCGTGCAGAATGTAGCGCTCACTGTGGCTGCATTTGTTATTGCCTTTATATTCAGTTGGCGCCTTGCAGCTGTTGTTGCTGCTTCTTTGCCCCTTCTTATTGGAGCTTCAATAACTGAGCAACTATTTCTCAAGGGCTTCGGAGGAGATTATAGTCGAGCATATAACCGTGCAACTGCTGTAGCACATGAAGCCATCGCCAATATACGCACGGTTGCAGCATTTGGTGCTGAAGAAAAGATCTCAAGTCAATTTTCCTTTGAATTAAACAAACCCAATAAGCAGGCCCTTCTGAGAGGCCATATTGCTGGCTTTGGCTATGGCGTATCCCAGTTCTTTGCATTCTGTTCCTATGCACTTGGCCTTTGGTATGCATCAACTCTTATCAAACACAAACACTCAAACTTTGGGGACATCATGAAATCTTTCATGGTTTTGATAATCACATCATTAGCAATAGCAGAAACTCTGGCTCTTACACCTGATATTGTAAAAGGCTCTCAAGCATTAGGATCAGTCTTCAATATTCTCCATCGGAGAACCGCCATAGATTCCAACAATCGATCTGCCGAGATGGTAACTAACATCAGGGGCGACATTGAATTCAGAAACGTGAGTTTTAAGTACCCTGCAAGACCAGATATCACAATCTTTGAGGATTTGAATCTAAGGGTATCTGCAGGCAAGAGTCTAGCAGTTGTCGGTCGAAGTGGGTCAGGAAAGAGCACGGTGATAGCATTGGTGATGAGATTCTACAACCCCATGTCGGGAACTATCTCTATCGATGGGCGTGACATTACAAGCTTAAACTTGAGATCGTTAAGGATGAAAATTGGGTTGGTTCAACAAGAACCAGCTTTGTTTTCCACAACAATACATGAGAACATCAAGTATGGGAATCAGGAGGCATCAGAAATTGAGGTAATGAAAGCAGCTAAGGCAGCTAACGCTCATGGCTTCATCAGCCGAATGCCGAATGGCTATGCAACGCACGTTGGCGACCGAGGAGTGCAGCTCTCTGGAGGGCAGAAGCAGAGGGTGGCAATTGCTAGAGCAATACTGAAAGACCCTTCCATTCTTCTGTTGGATGAAGCAACAAGTGCATTGGATGCAGCCTCTGAGAAGCAGGTGCAGGAGGCTCTTGACAGGCTAATGGAAGGCCGGACAACAATTCTCGTCGCCCACCGGCTTACAACCATCCGCAATGCCAACAGAATCGCCGTGCTCAAGAGTGGCAGAGTGGTTGAGATTGGCAGCCATGATAGCTTACTGAAGAACCCCAACAGTATCTATAAACAGTTGGTGAACTTGCAGCAGGAAACGAGTGTGCAATCGCTTGAGTAG 3753 44.79 MEIGSNGGSDQDPPPKMEEQEEKPSKKISVSFFGMFAAADAIDCLLMLFGSLGAFVHGAALPVFFVLFGRIIDSLGHFSRHPHTLSSRIAENALFLIYLGLIVLASAWIGVAFWMQTGERQAARLRMQYLNSILKKDIHFFDTKAKDCNIIFHISSDMVLVQDAIGDKIGHALRYFSQFVVGFGIGFTSVWKLTLLTLAIVPLVAIAGGAYTIIMSTLSEKGEAAYAQAGNAAEEVIAQIRTVYAYVGESKAVEKYSESLQNALKHGKRSGFAKGIGVGFTYSLLFCAWALLLWYASLLVLRHETNGGKAFTTIINVIFSGFALGQAMPNLAAIAKGRVAAANIFSMIDSGYESWSRSDNEVALSNIAGKIEFSEVSFAYPSRPQLIFEELSFSISAGKTVAVVGPSGSGKSTIVSMVQRFYEPSSGKILLDGYDLRSLDLKWLRRQMGLVSQEPALFSTTIAANILFGQEHAAMDEIIAAAQAANAHSFIQELPDGYSTPVGEGGTQLSGGQKQRIALARAVLRNPKILLLDEATSALDAESELIVQQALDRIMSNRTTIIVAHRLSTIRDADTITVLKNGQIVESGNHSELMSNNGEYAALVSLQVSDQVNDCSIISPSRSSGRSSFRESFSFHNSIQDSKSFRETELQSANKDSKTSNSPPSIWELLKLNAPEWRYAVLGSIGAILAGIQAPLFALGITHVLSAFYSPHHSQIKEEVQHVAYVFVGVAILTIPIYLLQHYFYTLMGERLTARVRLLLFSAILSNEVGWFDLDENNTGSLTSILASDATLVRSALADRISTIVQNVALTVAAFVIAFIFSWRLAAVVAASLPLLIGASITEQLFLKGFGGDYSRAYNRATAVAHEAIANIRTVAAFGAEEKISSQFSFELNKPNKQALLRGHIAGFGYGVSQFFAFCSYALGLWYASTLIKHKHSNFGDIMKSFMVLIITSLAIAETLALTPDIVKGSQALGSVFNILHRRTAIDSNNRSAEMVTNIRGDIEFRNVSFKYPARPDITIFEDLNLRVSAGKSLAVVGRSGSGKSTVIALVMRFYNPMSGTISIDGRDITSLNLRSLRMKIGLVQQEPALFSTTIHENIKYGNQEASEIEVMKAAKAANAHGFISRMPNGYATHVGDRGVQLSGGQKQRVAIARAILKDPSILLLDEATSALDAASEKQVQEALDRLMEGRTTILVAHRLTTIRNANRIAVLKSGRVVEIGSHDSLLKNPNSIYKQLVNLQQETSVQSLE 1250
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 438438 443470 - CmoCh09G000920.1 Cmo09g00092 388094

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo09g00092 1250 MobiDBLite consensus disorder prediction 644 663 - -
Cmo09g00092 1250 Pfam ABC transporter 1022 1170 IPR003439 GO:0005524
Cmo09g00092 1250 Pfam ABC transporter 389 537 IPR003439 GO:0005524
Cmo09g00092 1250 SMART AAA_5 397 583 IPR003593 -
Cmo09g00092 1250 SMART AAA_5 1030 1216 IPR003593 -
Cmo09g00092 1250 ProSitePatterns ABC transporters family signature. 1142 1156 IPR017871 GO:0005524
Cmo09g00092 1250 SUPERFAMILY ABC transporter transmembrane region 35 344 IPR036640 GO:0005524|GO:0016021
Cmo09g00092 1250 MobiDBLite consensus disorder prediction 1 25 - -
Cmo09g00092 1250 Pfam ABC transporter transmembrane region 685 954 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Cmo09g00092 1250 Pfam ABC transporter transmembrane region 48 320 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Cmo09g00092 1250 ProSitePatterns ABC transporters family signature. 509 523 IPR017871 GO:0005524
Cmo09g00092 1250 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 48 336 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Cmo09g00092 1250 PANTHER ABC TRANSPORTER B FAMILY MEMBER 13-RELATED 549 1241 - -
Cmo09g00092 1250 PANTHER ABC TRANSPORTER B FAMILY MEMBER 13-RELATED 419 576 - -
Cmo09g00092 1250 PANTHER ABC TRANSPORTER B FAMILY MEMBER 13-RELATED 31 471 - -
Cmo09g00092 1250 CDD ABC_MTABC3_MDL1_MDL2 1003 1241 - -
Cmo09g00092 1250 CDD ABC_6TM_Pgp_ABCB1_D1_like 47 344 - -
Cmo09g00092 1250 SUPERFAMILY ABC transporter transmembrane region 668 981 IPR036640 GO:0005524|GO:0016021
Cmo09g00092 1250 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 31 471 IPR039421 -
Cmo09g00092 1250 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 419 576 IPR039421 -
Cmo09g00092 1250 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 549 1241 IPR039421 -
Cmo09g00092 1250 CDD ABC_MTABC3_MDL1_MDL2 371 607 - -
Cmo09g00092 1250 Gene3D - 361 610 IPR027417 -
Cmo09g00092 1250 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 371 606 IPR003439 GO:0005524
Cmo09g00092 1250 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 993 1241 IPR027417 -
Cmo09g00092 1250 Gene3D - 993 1249 IPR027417 -
Cmo09g00092 1250 CDD ABC_6TM_Pgp_ABCB1_D2_like 670 986 - -
Cmo09g00092 1250 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 681 968 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Cmo09g00092 1250 Gene3D ABC transporter type 1, transmembrane domain 34 970 IPR036640 GO:0005524|GO:0016021
Cmo09g00092 1250 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 360 607 IPR027417 -
Cmo09g00092 1250 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1003 1239 IPR003439 GO:0005524
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo09g00092 K05658 ABCB1, CD243; ATP-binding cassette, subfamily B (MDR/TAP), member 1 [EC:7.6.2.2] - csv:101221121 2104.72
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo09g00092 Cmo-Chr9:438438 Cmo19g00237 Cmo-Chr19:1666009 1.46E-128 dispersed
Cmo09g00092 Cmo-Chr9:438438 Cmo04g02890 Cmo-Chr4:20570027 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1146 Blo01g01605 . Bda01g00476 . . . . Bma01g02378 . . . Cma09g00095 . . . . . . . . . . . . . . . . . . . . Cone7ag1900 . . . . . . . . . . . . . . . . Cmo09g00092 . . . Car09g00083 . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013207 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 0 1 1 1 1 0 1 1 27
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo09g00092 Cmo_Chr09 FPKM 13.1203 11.620334 32.005993 33.000477 6.650614 5.690301 7.486361 18.462835 21.119215 29.010567