Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo09g00093 ATGGAAGCGCTGTTGAAGATGAAGAGCGCCATGATCGGACCCGGGAGGTCGGCGCTTGATGATTGGGAGCCGTCGTCGTCCCCGTCTGCTCATTGCGATTTCTCCGGCGTTACGTGTGACGGCGATCACAGAGTTGTTGCGCTTAACGTCTCGAATTTTCGTTTATTCGGCCCGATTCCGCCAGAGATTGGGATGTTGGAGAAGATTGAGAACTTGACCTTAGTGAGTGACAATCTCACTGGAGGACTTCCTCTCGAAATGGCAAAACTCACATCGCTTAAGATTCTTAACCTATCTAACAACGCATTTCATGATAAGTTGCCGGCTGAAATCACGCTCGGAATGACCGAACTCGAGGTTTTTGATGTCTATAATAACAATTTCTCCGGTCCGCTCCCGGTGGAATTTGTCAAACTGAAGAAGCTTAAGCATCTTGACCTTGGTGGATGTTACTTCACAGGTCAGATTCCTTCTGTTTACTCGGAGATGCAGACGTTGGAGTTCTTAAGCGTGCGGGGAAATGCGCTTACCGGAAGTATTCCAGCGAGTTTGGCGCGGCTGAAGAATCTTAGGTATCTTTACGCCGGATATTTTAACCATTTCGACGGCGGGATTCCGGCCGAGTTCGGATCGTTGAGTTCTCTTGAGCTTCTCGATTTAGCCAACTGTAACCTCTCCGGTGAAATTCCTCCGAGTATGGGGAATTTGAAGCACCTGCATAGTCTATTTCTACAAGTAAACAATATAACCGGTCGGATTCCCCCTGAACTTTCCGGTCTGATTAGCCTCAAGTCACTGGACCTCTCACTGAACGAACTCACCGGAGAGATACCGTCGAGTTTCGAAGTACTGCAGAACCTCACGCTGATCAATTTGTTCAACAACAAGCTTCACGGTCCAATCCCTGGTTTCATAGGTGATTTTCCTCATCTTGAAGTGCTTCAGTTGTGGAGTAACAACTTCACGCTGGAGCTCCCCGAGAATCTAGGGCGTAACGGAAAACTGTTTCTGCTCGACGTGGCGACAAATCATCTAACTGGACTCATTCCTCCGGATTTATGTAATGGTAGGTTGAAGACTTTGATTCTGTTGGATAATTACTTCTATGGGCCCATCCCTGAGAAATTAGGCCGATGTGATTCACTTACGAAAATAAGAATTGCGGGAAATTTCTTCAACGGAACGGTTCCGGCAGGGTTCTTCAACTTCCCGGCGTTGGAGCTACTTGATATCAGTAATAATTACTTCTCTGGCGCTCTTCCGTCGCAAATGTCTGGCGAGTTTCTTGGAACTCTGCAGCTTAGTAACAACCATATTACCGGGGAAATCCCGGCCACTATTAAGAATTTAGAAAACTTGCAGGTTGTTTCTCTGGAATATAACCAATTCACTGGGCATTTGCCCGTGGAAATATTTGAATTGAACAAGTTGCTGAGGATTAACATCAGCTTTAACGATATTAGCGGCGAAATTCCGCATTCAGTTGTTCAGTGCTCGTCTTTAACGTCAATCGATCTCAGTGAAAATCATCTCGTCGGCCAAATTCCCAGGGGATTGTCGAAGCTGAAAATCTTGAGCGTCCTCAATTTGTCAAGAAATCAAGTGTCGGGCCAAATTCCTGACGAGATTCGGTCGATGATGAGTCTTACAGTTCTTGATTTGTCATACAATAACTTCTTCGGTAGAATCCCCACAGGCGGTCAGTTTTCGGTATTCAACGGCAGCGCCTTCGCCGGGAACCCTAACCTCTGCTTCCCCAGCCACGGATCTTGCGGATCTCTACACAAGAATTCGAAATCTGTTAAGCTAATCATTTCAATCGTCGCGATATTCACCGTTTTATTATGCGTATTCGTCGCAGTTTATCTCAGAAAGAGAAAGAGGATTCAGAAATCAAAGGCATGGAAACTCACAGCGTTCCAACGCCTCAATTTTAAAGCGGAGGACGTCCTCGAGTGTTTGAAGGAGGAGAATATCATCGGCAAAGGCGGCGCTGGCGTCGTCTACCGTGGATCAATGCCAGACGGCTCCATCGTAGCTATTAAACTGTTGTTAGGAAGCGGCCGGAACGACCACGGTTTCTCTGCTGAAATTCAAACTCTAGGGCGAATCAAGCACCGGAACATCGTCAGGCTTTTGGGTTACGTGTCGAACAGAGACACGAATCTGCTTCTATACGAGTACATGCCGAATGGGAGCTTGGACCAGAGGCTGCATGGAGTGAAGGGTAGGCATTTGCATTGGGACTTGCGGTACAAGATCGCGATGGAAGCCGCCAAGGGGCTCTGTTACTTGCACCACGATTGTACGCCGCTGATCATCCACAGGGACGTGAAGTCCAATAATATACTGCTGGATAAGCTCTTTGAAGCTCATGTCTCTGACTTTGGGCTCGCCAAGTTCTTCCAGAATGGCGGCGCCTCCGAGTGTATGTCCTCCATTGCCGGCTCATACGGCTACATTGCTCCAGAATATGCCTACACACTGAAAGTGGACGAGAAGAGCGATGTGTACAGCTTCGGTGTGGTGCTGCTGGAGCTGATAGCCGGGAGGAAGCCAGTGGGGGATTTTGGAGAAGGCGTGGACATAGTGAGGTGGGTCCTCAAAACCTCATCAGAACTCTCTCAACCGTCCGATGCTGCCTCAGTATTAGCCGTGGTGGACTCGCGCCTCGCCGAATACCCTCTCCAAGACGTAATCCACCTCTTCAAAATAGCCATGATGTGCGTGGAAGAAGACAGCTCTGCAAGGCCAACCATGAGGGAGGTTGTTCACATGCTCTCAAATCCCCCAAGGGCTGTCCCTGTTCTCATCAACCTCTAA 2823 48.35 MEALLKMKSAMIGPGRSALDDWEPSSSPSAHCDFSGVTCDGDHRVVALNVSNFRLFGPIPPEIGMLEKIENLTLVSDNLTGGLPLEMAKLTSLKILNLSNNAFHDKLPAEITLGMTELEVFDVYNNNFSGPLPVEFVKLKKLKHLDLGGCYFTGQIPSVYSEMQTLEFLSVRGNALTGSIPASLARLKNLRYLYAGYFNHFDGGIPAEFGSLSSLELLDLANCNLSGEIPPSMGNLKHLHSLFLQVNNITGRIPPELSGLISLKSLDLSLNELTGEIPSSFEVLQNLTLINLFNNKLHGPIPGFIGDFPHLEVLQLWSNNFTLELPENLGRNGKLFLLDVATNHLTGLIPPDLCNGRLKTLILLDNYFYGPIPEKLGRCDSLTKIRIAGNFFNGTVPAGFFNFPALELLDISNNYFSGALPSQMSGEFLGTLQLSNNHITGEIPATIKNLENLQVVSLEYNQFTGHLPVEIFELNKLLRINISFNDISGEIPHSVVQCSSLTSIDLSENHLVGQIPRGLSKLKILSVLNLSRNQVSGQIPDEIRSMMSLTVLDLSYNNFFGRIPTGGQFSVFNGSAFAGNPNLCFPSHGSCGSLHKNSKSVKLIISIVAIFTVLLCVFVAVYLRKRKRIQKSKAWKLTAFQRLNFKAEDVLECLKEENIIGKGGAGVVYRGSMPDGSIVAIKLLLGSGRNDHGFSAEIQTLGRIKHRNIVRLLGYVSNRDTNLLLYEYMPNGSLDQRLHGVKGRHLHWDLRYKIAMEAAKGLCYLHHDCTPLIIHRDVKSNNILLDKLFEAHVSDFGLAKFFQNGGASECMSSIAGSYGYIAPEYAYTLKVDEKSDVYSFGVVLLELIAGRKPVGDFGEGVDIVRWVLKTSSELSQPSDAASVLAVVDSRLAEYPLQDVIHLFKIAMMCVEEDSSARPTMREVVHMLSNPPRAVPVLINL 940
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 446395 449446 + CmoCh09G000930.1 Cmo09g00093 388095
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo09g00093 940 SUPERFAMILY L domain-like 357 587 - -
Cmo09g00093 940 Gene3D Transferase(Phosphotransferase) domain 1 729 933 - -
Cmo09g00093 940 SUPERFAMILY RNI-like 48 390 - -
Cmo09g00093 940 SUPERFAMILY Protein kinase-like (PK-like) 645 927 IPR011009 -
Cmo09g00093 940 Gene3D Ribonuclease Inhibitor 468 591 IPR032675 -
Cmo09g00093 940 Gene3D Ribonuclease Inhibitor 356 467 IPR032675 -
Cmo09g00093 940 Pfam Leucine Rich Repeat 214 236 IPR001611 GO:0005515
Cmo09g00093 940 Pfam Leucine Rich Repeat 262 284 IPR001611 GO:0005515
Cmo09g00093 940 Pfam Leucine rich repeat N-terminal domain 2 40 IPR013210 -
Cmo09g00093 940 Gene3D Phosphorylase Kinase; domain 1 618 728 - -
Cmo09g00093 940 Pfam Protein kinase domain 655 925 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo09g00093 940 Gene3D Ribonuclease Inhibitor 1 114 IPR032675 -
Cmo09g00093 940 ProSitePatterns Serine/Threonine protein kinases active-site signature. 773 785 IPR008271 GO:0004672|GO:0006468
Cmo09g00093 940 SMART serkin_6 654 927 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo09g00093 940 ProSiteProfiles Protein kinase domain profile. 654 937 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo09g00093 940 PANTHER UNNAMED PRODUCT 1 934 - -
Cmo09g00093 940 Gene3D Ribonuclease Inhibitor 115 201 IPR032675 -
Cmo09g00093 940 PANTHER RECEPTOR PROTEIN KINASE CLAVATA1 1 934 - -
Cmo09g00093 940 SMART LRR_typ_2 308 332 IPR003591 -
Cmo09g00093 940 SMART LRR_typ_2 260 283 IPR003591 -
Cmo09g00093 940 SMART LRR_typ_2 90 114 IPR003591 -
Cmo09g00093 940 SMART LRR_typ_2 212 236 IPR003591 -
Cmo09g00093 940 SMART LRR_typ_2 450 474 IPR003591 -
Cmo09g00093 940 SMART LRR_typ_2 522 546 IPR003591 -
Cmo09g00093 940 Pfam Leucine rich repeat 431 487 IPR001611 GO:0005515
Cmo09g00093 940 Pfam Leucine rich repeat 500 559 IPR001611 GO:0005515
Cmo09g00093 940 Pfam Leucine rich repeat 92 150 IPR001611 GO:0005515
Cmo09g00093 940 Gene3D Ribonuclease Inhibitor 202 355 IPR032675 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo01g02039 Cmo09g00093 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo09g00093 Cmo-Chr9:446395 Cmo16g00796 Cmo-Chr16:4048232 0 dispersed
Cmo01g02039 Cmo-Chr1:14285614 Cmo09g00093 Cmo-Chr9:446395 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74553 PF00069 Pkinase 7.80E-43 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo09g00093 K00924 - csv:101221360 1701.41