Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo09g00097 ATGGCTGGAGAATATAGGTTTGCCATGGACCAGAAGGACATTGTGAGATTATTGGTTGCCACCATTGATGATTTCACTCGAGGTCGCTTGATGAATAAAGAGCACAGGAACCTTCACAAAGAGCAATGTGCCGAGAGATTGGCAGCTGAAGACGGAAGCCATGACAAAGATACAGAGGTTAGGTACTCCGATCAAGCAGTGCTGGCGAATTTGGATTGGGGTATTGAAGCCCTTGAGGAGGCTCTCAACACATCCAATATAGAAACTAAGTTTGCACGGCTTGACCATGCGGAGAAGATGCTTCAAGTGTGTGCCTTGTTAAACTCTAACGAGAAAACTGCTGGAGTTCCCAATTTCTACCTTTCTGCTTGGGCTCACCTAAATCTTTCTTATCTCTGGAAATTGCGAGGAAATGTTCACAACTCAGCCCTCCATATTCTTGAGATGTTTATTGTGGATCCCTTCTTTTCACGCATTGATTTTGCTCCTGAGCTCTGGAAAGAACTCTTTCTTCCACACATGAGTTCAATCGTTGGGTGGTACTCAGAGGAGAGGCACAGGCTTGTGATCGAAGTGATTCCTGATTCTTCTGATTTATCCTTCACAGCTGATATAGATCAATTCTTCAACGAATCTTTGATATTTTCGCTGAGGCCTGATCAAGTGGAGAAATTACAGAAGTTGGAGAAGCTTTATGGAGAATCTTTGGACGAGAATTCGAGGCTCTTTGCTAAATACTTCAAGGACTGTATGAATTCTGATTCAAGCTCTACCAAGAAGGTTGCCCCGATGTTGCCAATCGCGGAGCCACCTATGACTCCTCTTCATGAAGTTAGCCGCTCAATTCCCGATTACATTAAATTTGGACCTATTTTACCCAAGAGTGCCGGCTTTTCGTCCATCTTGCTAAGATCTAAAGATGGTGCAACAGAAGCAAGCAGGCCAAAGGGGACTTCCAGTCCAGCCAACAGCTCAGAGAAATTTGCAGGGCGGTATGCTCAGAATGATTCACTAGAGGAGATTGAGAACGATTCTGATCATGAACCTTTCGATTCTTACGAACTTAGCGATACCGTGACACATAAATTACTCTCACCTAGTAGCACAAGGACGTCAGAGGATGAGCAAATAGGACCTAAAGGGGAGACGTCGAAAATGGGGAGTTGCAAACATTCTCCCACCATTTTTTCTCCAATTTCATCTCCTTCAATCCCTTCACCGAAAGTCTTATCTCCAACAGCGAATGAGAAGTGTAAAAATGAATCTCGTTCTGCATTGCGACTGTTATCTAGTCGCTTCGGCGGGCAACGTGTTGCTACCTCTGTCCCCAGATCACCAGCTACAGGAAGCGATCACAGCTTCAGTCCAGTAGAGTCTGAGGGTGAAACCGCCACAGGAGAAGATATAGACAAACGCACAATGCAATCTATAACGACTTTAATCGATAAACTTGAGGAGGAAAGCAGAAGTCGTTCGTCTGAGATTGTGACACATATAGTACGACCCCCTAAAGATTTCGTATGCCCCATAACAGGTCAGATTTTCAGTGAGCCTGTTACTCTTGAAACTGGACAGACTTATGAAAGAAAAGCGATTCAGGAATGGTTGAAAAGAGGAAATACAACTTGCCCCATTACACGGCAGCCATTGTCTTCAACTGTAATGCCTAAAATGAATTATGTCTTGAAAAGACTGATTACGTCTTGGCAGGAACAGCATCCTGATCTTGCTCAGGATTGTTCTTGGACTGGTACATCAGTAGTAAGTACTGTCAGTTCTTCCTTCAAAATGGCGAATTCTCTGGCATCTACTCCTTGCCGACCATTTCACATTCCTCTAAACAGTACGTACGAGTCTCTTAACCAAAAAGGCAAAAGATTAATGCAAGAAGCAGTATCTTCATCGCCGACCAGTGTAATATCCCAGGCCACAGTTGAGAAAATCATTAACAGTTTAAAACCTTTTGTCTCTTGTCTTTGTAATTTCGAAAGCTTGAAACAATGTGAGACAGCTGTGCTCGCTATAGCAGGGTTCTGGAAGGACTCGAAAGGTGATTTAGCGGTCCATTCTTATTTATCCGAATTGGCTGTTGTGAACGGCTTTGTGGAAGTACTGTTAAATTCCCGTGAGAGAGAAGTCCTCAGAACCTCGATTTACGTTCTTTCGGAGCTTATTTGTGCTGATGGAAATGTTGGAGAGTCCCTTAGTAGTCTAGATTCTGATTTTGATTGCCTAGCTTCTTTGCTGACGAGTGGGTTGTCAGAGGCTTCTGTTCTTATGTGCCTGCTAAGGCCTACATTTACTCAGTTGTCAGCTCATGACCTCATACCTTCCCTAGCCCAGATGATCCAGAAGAAAAATGAAGAATTTGATCATCTTCCGTTTGTAATAGAGCCAAAAAATGCTGCTATCGCAATGCTCGAACAGATTTTTATGGGAGGGGATGAAACTAGCCAGTCCAGGAATGCTGAGAGGTTTACCTCTGCTGAAGGAATCCCTGCATTAGTCAAGTTTTTGGGTAGGGTAGAAGTGAGGAGGCCAATACTTTCCATACTTTTATGTTGTATGCGGGTCGACCAAAGTTGCAAGGACTCAATAGTAGAGGAGATTGAGCTTGCTCCAGTTCTTGAGTTCCTTCATACTGGAAATGATGACGATAGAGGCCTGTGTGTGGCTTTTCTGTCAGAGCTGGTTCAGATGCACAGACGGACAAAATGCAATCAAATTTTGCAGACAATTAAAGATGAAGGAGCATTCAGTACGATGCATACACTTCTTACATATCTTCAAATGGCTCCAATTGAGCAACAACCGGGCATTGCTTCTCTTCTTCTCCAGCTGGATCTCCTGACTGAACCACGAAGAATGAGCATTTACCGAGAAGAATCTATAGAGGCACTGTTTGAAGCCTTTCGAAGAAAGGACAACTATAATTCTCAAATTGCAGCTGTAGATGCTTCATTATATCTATCTGGGCGATTCACTTCCTCGGGGAAGTCCTACACAAAAGCGTGGTTGCTCAAACTTGCAGGATTTGATCAGCCTTACAATGCTTTGATGAAGGCCGAGGGACTGAGGAAGCCTGACTACGAATTATCAGAGAGAGAGGAGGAAGAGAAGGCAGTCAGCGTATGGGAGAAGAGGATAGCACTTGTTCTTTGTAACCATGAAAAAGGGTACATTTTTGAAGTTATGAAGGAATGCCTGAAGAGTAAATCATTAGAGATGGCGAAGTCCTGTCTTGTCATTGTTTCCTGGCTCTGCCACATGGTTTCGACGCTCCCAGATACTGGAGTACAAGAGACTGCTCGCAGGTCCTTGCTTGATGAACTTGTAAACGTTCTCCAATCTTCTAACAGCCTGGAGGAGAAGATTTTAGCATGCCTTGTTTTGAAAACTTTCATTAGTGACCCAGCTGCACTTGAGGAACTGGGACTTCATGCAACATCCATCAACAAAACGTTGAGAAAGCTCAGGAGAAGCTCTTTGGTGGTCAATGATATAATGAAAGCCTTGATGAACGTGCCATCCGTTGATGCAACAGAGCTCTGGAGTTATACGGAAGTTGGTGCACTAGATTCCAGCTCAAATGGAGAGGTTTTGTCCCTGGTTCATCTGAATGGGCGGGTCTTAAGCAGTCACTCGGACGGAACCATCAAGGTTTGGGATGCTGGAGATAAAGTATTGAAGTTGATCCAAGAAGCACGCAAGCACACAAAAGCTGTAACATGCCTGTGTGTTTCCTCTTCGGGCGACGCATTATACAGCGGTTCCTTAGACAAAACAATCCGGGTATGGACCGTCAAGTGTGAAAAAATACAGTGCGTTCAAGTTCATGAAGTGAAGGAGCCAATCTATGACATGAAAGCCAACGCCAATGTTGCATGCTTTGTTTCTCAAGGAACTGGCGTTAAGGTGTACAACTTCTCTGGAGTTCCCAAGCATATAAATTTCAATAAATACGTCAAGTCCCTGGCATTATCAGAAGATAAACTTTATTGCGGTTGCTCTGGTGACTGTATACTGGAGGTGGATTTGACCAAACATACTACAAGCACATTCTATGCTGGTGTAAGAAAGTTGTTATGGAAACAAAACATCTACTCCTTACACTTACACGGGGACCTGCTGTTTGCTGCCGGTTCAGCAGTGGATGGAACTGCAGGCAAGACATTTTCGCTGTCGAACAAGATAACGGTGGGATCCTTTTCGCCTGGAGTTGACATCCATCACATGGCTGTAAGCACCGACTTGTTGTTTACAGCCTCGAGATTGGGCATGATTATAGAGGTCTTGTCGAAAGAAAAGTATACAAAAATTGGTTCACTTAAATTAGGTAGTGCTAGTGGTAGCCACGCAAAGATTACGTACCTAACTACAGATGATGATGGAGGATTGCTCTTTGTTGGCACCTCTGGCGGAAAGATACAGGTTTGGGGTCTGACGGAATGA 4452 44.0 MAGEYRFAMDQKDIVRLLVATIDDFTRGRLMNKEHRNLHKEQCAERLAAEDGSHDKDTEVRYSDQAVLANLDWGIEALEEALNTSNIETKFARLDHAEKMLQVCALLNSNEKTAGVPNFYLSAWAHLNLSYLWKLRGNVHNSALHILEMFIVDPFFSRIDFAPELWKELFLPHMSSIVGWYSEERHRLVIEVIPDSSDLSFTADIDQFFNESLIFSLRPDQVEKLQKLEKLYGESLDENSRLFAKYFKDCMNSDSSSTKKVAPMLPIAEPPMTPLHEVSRSIPDYIKFGPILPKSAGFSSILLRSKDGATEASRPKGTSSPANSSEKFAGRYAQNDSLEEIENDSDHEPFDSYELSDTVTHKLLSPSSTRTSEDEQIGPKGETSKMGSCKHSPTIFSPISSPSIPSPKVLSPTANEKCKNESRSALRLLSSRFGGQRVATSVPRSPATGSDHSFSPVESEGETATGEDIDKRTMQSITTLIDKLEEESRSRSSEIVTHIVRPPKDFVCPITGQIFSEPVTLETGQTYERKAIQEWLKRGNTTCPITRQPLSSTVMPKMNYVLKRLITSWQEQHPDLAQDCSWTGTSVVSTVSSSFKMANSLASTPCRPFHIPLNSTYESLNQKGKRLMQEAVSSSPTSVISQATVEKIINSLKPFVSCLCNFESLKQCETAVLAIAGFWKDSKGDLAVHSYLSELAVVNGFVEVLLNSREREVLRTSIYVLSELICADGNVGESLSSLDSDFDCLASLLTSGLSEASVLMCLLRPTFTQLSAHDLIPSLAQMIQKKNEEFDHLPFVIEPKNAAIAMLEQIFMGGDETSQSRNAERFTSAEGIPALVKFLGRVEVRRPILSILLCCMRVDQSCKDSIVEEIELAPVLEFLHTGNDDDRGLCVAFLSELVQMHRRTKCNQILQTIKDEGAFSTMHTLLTYLQMAPIEQQPGIASLLLQLDLLTEPRRMSIYREESIEALFEAFRRKDNYNSQIAAVDASLYLSGRFTSSGKSYTKAWLLKLAGFDQPYNALMKAEGLRKPDYELSEREEEEKAVSVWEKRIALVLCNHEKGYIFEVMKECLKSKSLEMAKSCLVIVSWLCHMVSTLPDTGVQETARRSLLDELVNVLQSSNSLEEKILACLVLKTFISDPAALEELGLHATSINKTLRKLRRSSLVVNDIMKALMNVPSVDATELWSYTEVGALDSSSNGEVLSLVHLNGRVLSSHSDGTIKVWDAGDKVLKLIQEARKHTKAVTCLCVSSSGDALYSGSLDKTIRVWTVKCEKIQCVQVHEVKEPIYDMKANANVACFVSQGTGVKVYNFSGVPKHINFNKYVKSLALSEDKLYCGCSGDCILEVDLTKHTTSTFYAGVRKLLWKQNIYSLHLHGDLLFAAGSAVDGTAGKTFSLSNKITVGSFSPGVDIHHMAVSTDLLFTASRLGMIIEVLSKEKYTKIGSLKLGSASGSHAKITYLTTDDDGGLLFVGTSGGKIQVWGLTE 1483
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 464854 471559 + CmoCh09G000970.1 Cmo09g00097 388099

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo09g00097 1483 SUPERFAMILY RING/U-box 493 575 - -
Cmo09g00097 1483 MobiDBLite consensus disorder prediction 360 422 - -
Cmo09g00097 1483 Gene3D - 1205 1483 IPR015943 GO:0005515
Cmo09g00097 1483 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 1235 1269 - -
Cmo09g00097 1483 Pfam U-box domain 503 573 IPR003613 GO:0004842|GO:0016567
Cmo09g00097 1483 ProSiteProfiles Trp-Asp (WD) repeats profile. 1235 1269 IPR001680 GO:0005515
Cmo09g00097 1483 Pfam WD domain, G-beta repeat 1236 1266 IPR001680 GO:0005515
Cmo09g00097 1483 SUPERFAMILY ARM repeat 807 1155 IPR016024 -
Cmo09g00097 1483 SMART WD40_4 1436 1480 IPR001680 GO:0005515
Cmo09g00097 1483 SMART WD40_4 1228 1267 IPR001680 GO:0005515
Cmo09g00097 1483 SMART WD40_4 1185 1223 IPR001680 GO:0005515
Cmo09g00097 1483 MobiDBLite consensus disorder prediction 360 374 - -
Cmo09g00097 1483 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 1 1481 - -
Cmo09g00097 1483 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 1 1481 - -
Cmo09g00097 1483 MobiDBLite consensus disorder prediction 309 328 - -
Cmo09g00097 1483 SUPERFAMILY WD40 repeat-like 1208 1481 IPR036322 GO:0005515
Cmo09g00097 1483 Gene3D - 637 947 IPR011989 -
Cmo09g00097 1483 ProSiteProfiles Trp-Asp (WD) repeats profile. 1448 1483 IPR001680 GO:0005515
Cmo09g00097 1483 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 502 576 IPR013083 -
Cmo09g00097 1483 ProSiteProfiles U-box domain profile. 501 576 IPR003613 GO:0004842|GO:0016567
Cmo09g00097 1483 MobiDBLite consensus disorder prediction 435 469 - -
Cmo09g00097 1483 SMART Ubox_2 505 569 IPR003613 GO:0004842|GO:0016567
Cmo09g00097 1483 CDD RING-Ubox_PUB 506 548 IPR045210 -
Cmo09g00097 1483 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 1448 1483 - -
Cmo09g00097 1483 MobiDBLite consensus disorder prediction 435 460 - -
Cmo09g00097 1483 MobiDBLite consensus disorder prediction 387 422 - -
Cmo09g00097 1483 MobiDBLite consensus disorder prediction 312 328 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo09g00097 - - - csv:101221826 2395.54
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo09g00097 Cmo-Chr9:464854 Cmo11g00631 Cmo-Chr11:3019891 0 dispersed
Cmo09g00097 Cmo-Chr9:464854 Cmo18g00518 Cmo-Chr18:3771896 2.09E-12 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1121 Blo01g01601 . Bda01g00480 . Bpe02g00344 . . Bma01g02371 . . . Cma09g00101 . . . Cpe06g00063 . . . . . . . . . . . . . . . Cone4ag1974 Cone7ag1892 . . . Csa03g04286 Chy04g00411 . . . . . . . . . Sed08g0779 . Cmo09g00097 . . . Car09g00089 . . Bhi09g02080 Tan01g5029 Cmetu02g0590 . Hepe01g1609 Mch11g0110 . . . . . . . . . . . Cme04g00462
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005991 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 2 1 1 1 1 1 1 2 1 2 6 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo09g00097 Cmo_Chr09 FPKM 8.575056 10.800489 12.397449 15.566199 7.246359 7.228303 8.238981 16.848375 17.003675 16.510136