Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo09g00099 ATGTCCTCCGACGCTGTACCACCTCTCATTGCTGCTCATGTCAATTACCTGCTCAGCCACTTTCCTCTCCCCGTCAAGATTGAGAACATGTGGTCTGGCAGTAGACACTGCCCTGGAATTATTGATAGGTTCACGCTGATCGTACCTTACTGCCTTGAATTCGTCAGATGGGACATCATGTACAATGCTGAAACACCATTTTCTGCTCCTGATATTATGTTTGGAGCAGAAGATGAAAATTTCCATCCATTCTCAAGTAAGGTTGATGAAGGAGAACGAGATCATAATTCATTACAGAACTGTCTACGTGACTGGAACAGCAAAGATCCATCACGGCTCACTAGCCTCCTTCAAGAACTAAGGGATCGATATGTGTCGTACCAAAGGAAACGTGTTGAAGGAGTTGATGATGAAAGATTGAAGTTTGAACTTTGTACTATGTTATCTAGGGAGCCAGAGGAGGTCAAATTTGCTGTGCCGCTGGTAGACATTGATATTAACAAGATGATTCCTGGATGCCCGTGGAGGCATCCACAGAAGATATTTTTGCAGGTTTTATATCCTGTGGTGAGAAAATATGCATCTACTCCTGTTGCACCTCGTCTGAAATTGGTTTCTACATCTGAGTTGAAGGCCCTGTTATCCATTGAGGATATCAAACTTCCTTCATGGATAGATGGAATGTGCATGGCTGAATATCTTCCTCACCTAGAAGAGAGTCTTGAGAAACAGGTTCTGGAGGCAGTTTCATTGATTGATGTTAGGAGAGGCTTTATAGAGGCGTTGGACTCCTTCTTTGGAAGGCCTTTAGAAGCTGACCCGGTGTTCTGTCGAACGGCTACAGTTATCACTGCCTCTGGGGTGTTCACATTCCTGCTTTCTTTAACTCTCGACCAGAATAACTGCTTCTCCGTCTCCTCAAAATCTTCCGTTGTTAGGATTTATTCCCTGGCCAGTAGAGATTCAGATGCGCACTTCCTCATTTCAAGCCAATTTCCGAAGAAACAGCCTTCTCTGGTGCTGCAAAGTTCTCAGCATTTCAACTCCCATGGTGCGCCCATCAAGTCGCAGCTTATTACCGACTATCCTTGGAGTCCTAGGTGGGAGCCATTGCAAATGGCTGAGCGGATTTTCGAGTTTCTGGCTGACGAGGCTTTGAGCTTCAAGAGATTGACTTTGACTTTGCCATCTCCTTGGGAATGCCTGGTTAGTGCTTCCTCTACAAGGATGACTGAAAGATTTCTAATGGCAGCAACTAAAGGTCTTGTGTTTGCTATGCTTCTTATTGCTTTTGCTTTTGTGCCCCTTACGGAATCAGCCCAAATGGTTAGCACAACTCAGGTTGATAGCCCTCTTCCTGGCGAGATAGATTGTGGGGAAGCTTGTGATGCGAGATGCCAATTATCGTCGAGGCAAAAGATCTGCAAGAGAGCATGTGGAACCTGCTGCGCTCGCTGTCAATGCGTTCCACCAGGCACTTCAGGCAACTATGATGTTTGTCCCTGCTATGCTAACATGACTACACATGGTGGCAGGCACAAGTGTCCCTAG 1551 45.78 MSSDAVPPLIAAHVNYLLSHFPLPVKIENMWSGSRHCPGIIDRFTLIVPYCLEFVRWDIMYNAETPFSAPDIMFGAEDENFHPFSSKVDEGERDHNSLQNCLRDWNSKDPSRLTSLLQELRDRYVSYQRKRVEGVDDERLKFELCTMLSREPEEVKFAVPLVDIDINKMIPGCPWRHPQKIFLQVLYPVVRKYASTPVAPRLKLVSTSELKALLSIEDIKLPSWIDGMCMAEYLPHLEESLEKQVLEAVSLIDVRRGFIEALDSFFGRPLEADPVFCRTATVITASGVFTFLLSLTLDQNNCFSVSSKSSVVRIYSLASRDSDAHFLISSQFPKKQPSLVLQSSQHFNSHGAPIKSQLITDYPWSPRWEPLQMAERIFEFLADEALSFKRLTLTLPSPWECLVSASSTRMTERFLMAATKGLVFAMLLIAFAFVPLTESAQMVSTTQVDSPLPGEIDCGEACDARCQLSSRQKICKRACGTCCARCQCVPPGTSGNYDVCPCYANMTTHGGRHKCP 516
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 477271 484805 + CmoCh09G000990.1 Cmo09g00099 388101

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo09g00099 516 Pfam Brain and reproductive organ-expressed protein (BRE) 25 298 IPR010358 GO:0070531|GO:0070552
Cmo09g00099 516 PANTHER BRISC AND BRCA1-A COMPLEX MEMBER 2 2 396 IPR010358 GO:0070531|GO:0070552
Cmo09g00099 516 Pfam Gibberellin regulated protein 457 516 IPR003854 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo09g00099 K12173 BRE, BRCC45; BRCA1-A complex subunit BRE - csv:101214619 665.996
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo09g00099 Cmo12g00361 CCT
Cmo01g02029 Cmo09g00099 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo05g00156 Cmo-Chr5:678878 Cmo09g00099 Cmo-Chr9:477271 4.68E-15 dispersed
Cmo07g00684 Cmo-Chr7:3085589 Cmo09g00099 Cmo-Chr9:477271 3.13E-14 dispersed
Cmo11g01401 Cmo-Chr11:9853936 Cmo09g00099 Cmo-Chr9:477271 2.30E-11 dispersed
Cmo14g01131 Cmo-Chr14:7958822 Cmo09g00099 Cmo-Chr9:477271 2.68E-13 dispersed
Cmo01g02034 Cmo-Chr1:14263120 Cmo09g00099 Cmo-Chr9:477271 0 transposed
Cmo11g01046 Cmo-Chr11:5816242 Cmo09g00099 Cmo-Chr9:477271 2.50E-14 transposed
Cmo14g00641 Cmo-Chr14:3223478 Cmo09g00099 Cmo-Chr9:477271 1.32E-19 transposed
Cmo15g00031 Cmo-Chr15:218843 Cmo09g00099 Cmo-Chr9:477271 1.04E-24 transposed
Cmo18g00117 Cmo-Chr18:823704 Cmo09g00099 Cmo-Chr9:477271 1.26E-22 transposed
Cmo01g02029 Cmo-Chr1:14246135 Cmo09g00099 Cmo-Chr9:477271 1.75E-32 wgd
Cmo12g00361 Cmo-Chr12:2236117 Cmo09g00099 Cmo-Chr9:477271 2.29E-32 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1108 . . Bda01g00486 . Bpe02g00350 Bpe04g00248 Bma04g00248 . . Cmo12g00361 Cma01g01971 Cma09g00103 Car01g01542 Car12g00388 . . Cpe07g00368 Bhi04g00154 . . . . . . Cla08g01426 Cam08g1906 Cec08g1482 . Clacu08g1597 . Cre08g1382 Cone4ag1971 Cone7ag1888 . . Lsi04g01745 Csa03g04280 Chy04g00417 Cme03g01885 . . . . . . . . . Cmo01g02029 Cmo09g00099 Cma12g00410 . . Car09g00093 . Cpe02g00071 Bhi09g02089 Tan01g5017 . . Hepe01g1614 Mch11g0117 . Cla05g01870 Cam05g2000 Cec05g2013 Cco05g2070 Clacu05g1992 Cmu05g1873 Cre05g1997 Lsi08g01325 . . Cme04g00470
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008486 1 2 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 3 1 1 1 1 1 1 0 1 1 1 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo09g00099 Cmo_Chr09 FPKM 7.760473 7.932793 7.320386 6.751707 41.585186 40.251373 35.974953 9.433494 8.894026 7.733058