Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo09g00104 ATGGCGCTCTTAACTTCCCACCACAATAAACGCCGAAAAAGGCACAAAAACCCATCACCGCCGCCGCCGCCGCCGCCCTCCGCCCAGTCGTCATGGGACCAGATCAAGAGCCTCCTCACCTGCAAACAGATCGAGACTTCGAGAGTTCACGAGCCGGTGAAACGCTCGCCGGCGTACTCGAAGTTGGGGTCTTCTTGCAGCTCCATATGTAGCTTCAGAGACGTGGTTCATGGCAATGCCAAAGTGGTTCATAGAGCCGACAACTCTCCCGAAAGCAGCTCCGTCGGACAGGAAACCAGGTTGCTTCATAGAAAAGCCCCAAACGGTTCCTCATCTCGTTCTTTGACGGCGCCGACACCTGGCAGAACCAAACACGCTGCTTCAGCTTCTGCTTCTGCTTCCTACTCCTCTTCTTCCAGAGGAATCCAATTACGAAAGCTCTCCGGGTGTTATGAATGCCACACCATCGTCGACCCTACCAGGTACCCAATTCCGAGGAGTTCTATACGTCCTTGTCCTCACTGTGGAGAGGTGTTCCCGAAGCCTGAAACCTTGGAGCTTCACCAATTAGTTCGCCACGCTGTATCCGAGTTGGGTCCTGACGATTCGGGTCGAAACATCGTGGAGATAATTTTCAAGTCAAGCTGGCTGAAAAAGGACCGCCCCATTTGCAAGATCCAACGGATATTAAAGGTCCACAATACCCAACGCACCATCCAACGCTTCGAGGACTGCCGTGATGCAGTGAAGACACGTGCGCTCAACAGCACCAAAAAAAACCCGCGCTGTGCGGCTGACGGCAATGAGCTGTTGAGGTTCCATTGTAGTGCCTTGTTGTGCGACCTCGGCTCACGTGGCTCTACCGGCTTATGCGGCTCGATACCCGGCTGCGGTGTCTGCACCGTCATCCGCCACGGATTCCAGTGCAAGCCCGGTGGGGTCCCTGGCGTACAGACTACTGCCAGTAGCGGTAGGGCCCATGATTCGTTCGGATGCAGCGATGGTCGGCGGCGGGCGATGTTGGTGTGCCGTGTCATCGCCGGGAGAGTCAAGCGTATGGCAGAAGATGGGGCAGGAACAACGACGACAGAGGAGGAGAACATGTCGGCGGCGGGGTCATACGACTCCGTTTCACGACACTCCGGGATGTACTCGAATCTGGAGGAGCTCATCATTTTCAATCCAAAGGCTATCCTTCCTTGTTTCGTCGTCATCTACGAAGCCCTCCAAACCTAA 1236 55.34 MALLTSHHNKRRKRHKNPSPPPPPPPSAQSSWDQIKSLLTCKQIETSRVHEPVKRSPAYSKLGSSCSSICSFRDVVHGNAKVVHRADNSPESSSVGQETRLLHRKAPNGSSSRSLTAPTPGRTKHAASASASASYSSSSRGIQLRKLSGCYECHTIVDPTRYPIPRSSIRPCPHCGEVFPKPETLELHQLVRHAVSELGPDDSGRNIVEIIFKSSWLKKDRPICKIQRILKVHNTQRTIQRFEDCRDAVKTRALNSTKKNPRCAADGNELLRFHCSALLCDLGSRGSTGLCGSIPGCGVCTVIRHGFQCKPGGVPGVQTTASSGRAHDSFGCSDGRRRAMLVCRVIAGRVKRMAEDGAGTTTTEEENMSAAGSYDSVSRHSGMYSNLEELIIFNPKAILPCFVVIYEALQT 411
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 494843 496899 - CmoCh09G001040.1 Cmo09g00104 388106
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo09g00104 411 ProSitePatterns Zinc finger C2H2 type domain signature. 172 193 IPR013087 -
Cmo09g00104 411 ProSiteProfiles Zinc finger C2H2 type domain profile. 170 198 IPR013087 -
Cmo09g00104 411 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 21 410 - -
Cmo09g00104 411 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 21 410 - -
Cmo09g00104 411 MobiDBLite consensus disorder prediction 1 33 - -
Cmo09g00104 411 MobiDBLite consensus disorder prediction 83 132 - -
Cmo09g00104 411 MobiDBLite consensus disorder prediction 86 132 - -
Cmo09g00104 411 MobiDBLite consensus disorder prediction 1 18 - -
Cmo09g00104 411 MobiDBLite consensus disorder prediction 46 65 - -
Cmo09g00104 411 Gene3D - 194 408 - -
Cmo09g00104 411 SUPERFAMILY ADP-ribosylation 195 407 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo01g02027 Cmo09g00104 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g00760 Cmo-Chr2:4756462 Cmo09g00104 Cmo-Chr9:494843 7.46E-65 dispersed
Cmo04g02449 Cmo-Chr4:18141668 Cmo09g00104 Cmo-Chr9:494843 1.60E-109 dispersed
Cmo09g00104 Cmo-Chr9:494843 Cmo15g00715 Cmo-Chr15:3476055 3.28E-110 dispersed
Cmo01g02027 Cmo-Chr1:14238762 Cmo09g00104 Cmo-Chr9:494843 1.38E-161 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10319 None None None None Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo09g00104 - - csv:101222539 662.914