Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo09g00106 ATGATTGGCTCCTTTCTTACCAGAGGACTTGTAATGATTTTTGGCTATGCTTTTCCTGCTTATGAGTGTTATAAAACTGTTGAAATGAACAAACCAGAGATTGAGCAACTTCGTTTTTGGTGCCAATACTGGATATTAGTGGCTGTTTTGACAGTTTGTGAGAGGATTGGAGATGCATTCATTTCATGGGTTCCTATGTATAGTGAAGCTAAATTGGCATTCTTTATATATCTCTGGTACCCTAAAACAAAGGGAACAACTTATGTGTATGATTCCTTCTTTAGACCATATGTAGCAAAACATGAGACAGATATTGACCGAAATTTGTTGGAACTAAGGACCAGAGCTGGTGATATGGCTATTATTTACTGGCAGAGAGCTGCAAGCTATACTCAAACAAGAATATTCGAGATTTTGCAGTATGTTGCTGACCAATCAACAGCAAGGCCTCGCCGGTCTCAGCAACAGCAAGGGTCAAAGGTTCCACCGGACAATGTTGCACCAAAACACCCGGCAACCACTGCAAATCAAGTGCAAATTGAACCAACATCATCTACATCTCAACAACAGAAAGATGTAGCTGAAGAGGTGGGTGTGTCACAAGTTTCAAAACTAAAAACCACATTTGAAGTTCTTAATACTCAGAAAGTGCCAAAATCGACAACCACAGTCGAAGTTCCTAGTACTTCTAGAGGGTTGAAACCATCAACCTCAGTTGAAGCTCCTCCTAGTACTCCGAAAGTGTTGAAACCATCAACCTCGATTGAAGTTCCTAATACTCAAAAAGCAGTTGCAGCATCTGAACCAGCTCTAGCCAGCAGCAACCTATCTTTACCATCTGAAATGGAGCCAATGGAGATCGAAACAGTGTCACATCCAGTGCACGAGAACGAAATTCCTCCCCTTAAAGAGACTGTAATGGAAGACTCCACAAAAGTAACTCGCGCGAGATTGAGAAAGACCCGTTCAGGCGCTGCTAATAGCTGA 987 41.84 MIGSFLTRGLVMIFGYAFPAYECYKTVEMNKPEIEQLRFWCQYWILVAVLTVCERIGDAFISWVPMYSEAKLAFFIYLWYPKTKGTTYVYDSFFRPYVAKHETDIDRNLLELRTRAGDMAIIYWQRAASYTQTRIFEILQYVADQSTARPRRSQQQQGSKVPPDNVAPKHPATTANQVQIEPTSSTSQQQKDVAEEVGVSQVSKLKTTFEVLNTQKVPKSTTTVEVPSTSRGLKPSTSVEAPPSTPKVLKPSTSIEVPNTQKAVAASEPALASSNLSLPSEMEPMEIETVSHPVHENEIPPLKETVMEDSTKVTRARLRKTRSGAANS 328
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 501167 503389 - CmoCh09G001060.1 Cmo09g00106 388108

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo09g00106 328 MobiDBLite consensus disorder prediction 218 252 - -
Cmo09g00106 328 Pfam TB2/DP1, HVA22 family 19 97 IPR004345 -
Cmo09g00106 328 MobiDBLite consensus disorder prediction 308 328 - -
Cmo09g00106 328 PANTHER HVA22-LIKE PROTEINS 7 324 IPR004345 -
Cmo09g00106 328 MobiDBLite consensus disorder prediction 170 194 - -
Cmo09g00106 328 MobiDBLite consensus disorder prediction 147 162 - -
Cmo09g00106 328 MobiDBLite consensus disorder prediction 147 194 - -
Cmo09g00106 328 PANTHER HVA22-LIKE PROTEIN 7 324 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo09g00106 - - K17338 csv:101216294 515.383
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo05g00303 Cmo09g00106 CCT
Cmo09g00106 Cmo12g00364 CCT
Cmo09g00106 Cmo12g00364 ECH
Cmo05g00303 Cmo09g00106 ECH
Cmo01g02026 Cmo09g00106 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo03g01119 Cmo-Chr3:8978887 Cmo09g00106 Cmo-Chr9:501167 8.40E-18 dispersed
Cmo09g00106 Cmo-Chr9:501167 Cmo14g00337 Cmo-Chr14:1549925 4.54E-60 dispersed
Cmo14g00339 Cmo-Chr14:1554049 Cmo09g00106 Cmo-Chr9:501167 3.21E-14 dispersed
Cmo11g01719 Cmo-Chr11:12181350 Cmo09g00106 Cmo-Chr9:501167 2.50E-54 transposed
Cmo01g02026 Cmo-Chr1:14233413 Cmo09g00106 Cmo-Chr9:501167 4.25E-163 wgd
Cmo12g00364 Cmo-Chr12:2251514 Cmo09g00106 Cmo-Chr9:501167 1.25E-77 wgd
Cmo05g00303 Cmo-Chr5:1336061 Cmo09g00106 Cmo-Chr9:501167 1.61E-69 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1095 Blo01g01595 Blo12g00886 . Bda03g00289 Bpe02g00352 Bpe04g00245 Bma04g00245 . Cmo05g00303 Cmo12g00364 Cma01g01968 Cma09g00110 Car01g01539 Car12g00391 Sed01g2489 . Cpe07g00371 Bhi04g00159 Tan02g2062 Cmetu03g2203 . Hepe10g0141 . Lcy13g1921 Cla08g01432 Cam08g1911 Cec08g1487 . Clacu08g1602 . Cre08g1387 Cone4ag1966 Cone7ag1879 Cone17ag1397 Cone20ag0084 Lsi04g01738 Csa03g04272 Chy04g00423 Cme03g01890 . . . . . . . . . Cmo01g02026 Cmo09g00106 Cma12g00413 Cma05g00300 Car05g00248 Car09g00099 Cpe11g00249 Cpe02g00075 Bhi09g02095 . . . Hepe01g1620 Mch11g0124 . Cla05g01875 Cam05g2006 Cec05g2018 Cco05g2077 Clacu05g1999 Cmu05g1880 Cre05g2003 . Csa02g02124 Chy03g01394 Cme04g00475
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001694 1 2 2 1 3 2 4 2 2 2 2 2 4 2 1 4 2 4 3 2 2 2 2 2 2 2 2 3 3 2 69
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo09g00106 Cmo_Chr09 FPKM 0.851485 1.690718 1.041733 1.221037 3.665267 3.135074 3.996793 0.0 0.0 0.180364