Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo09g00115 ATGAGCTCTGTGGAAGACAAGCTCAAGACACCAATGGGTTTGGTTAATAACACCCCTCAGACTAACCTTCTCGACGAGATGAAGTTGCTGAAACAAATGCAAGATCAAACAGGGGCCCGGAAGGCTATTAACTCCGAGCTCTGGCACGCGTGTGCTGGTCCGCTTGTTTCCTTGCCCCATGTGGGGAGTCTTGTTTATTACTTTCCTCAGGGACATAGTGAACAGGTGGCGGTTTCTACCAAGAGAACAGCAACCTCACAGATTCCAAATTATCCTAATCTTCCCTCTCAGTTGATGTGCCAAGTTCAAAGTATTACCTTACATGCTGATAAAGATTCAGATGAAATCTACGCTCAAATGAGCCTTCAACCGGTGAACTCTGAAAGAGATGTCTTCCTAGTTCCGGACTTTGGACTACGGCCGAGTAAACACCCAAATGAATTCTTCTGCAAAACTTTGACTGCCAGTGATACCAGCACACATGGTGGGTTCTCAGTGCCACGCAGGGCTGCTGAAAAGCTTTTTCCGCCATTGGATTACACAATGCAACCACCAACTCAGGAGCTCGTTGTTCGAGACTTGCATGACAATACCTGGACTTTTCGCCACATCTATCGCGGGCAGCCGAAGCGACATCTTCTCACAACTGGGTGGAGTCTATTTGTTGGATCAAAGAGGCTTAGAGCAGGCGATTCTGTTCTTTTCATAAGGGATGAAAAGTCCCAGTTGCTGATTGGAGTGAGGCGTGCTAACCGGCAACAAACAACATTGCCATCATCGGTACTATCCGCAGACAGTATGCATATAGGAGTTCTTGCTGCTGCAGCTCATGCCGCTGCTAATCGCAGTCCATTCACAATCTTTTACAATCCCAGGGCATGTCCTTCAGAGTTTGTTATTCCCTTAGCCAAATATCGGAAATGTGTATTCGGAACTCAGCTTTCTGCGGGTATGAGGTTCGGGATGATGTTTGAAACAGAGGAGTCGGGAAAACGCCGATACATGGGTACAATTGTTGGGATTAGCGATTTAGATCCACTTAGGTGGCCAGGTTCCAAGTGGCGAAATCTTCAAGTGGAATGGGATGAGCCAGGGTGCTGCGACAAGCAAAACAGGGTTAGTTCATGGGAAATAGAAACTCCAGAAAGTCTTTTCATTTTTCCTTCTCTGACTTCGGGTCTTAAACGTCCATTGCACGGCGGATTTTTGGGAGAAACTGATTGGGAAAGTCTGGTGAAGAGACCAATGCTTCGTGTTCCTGAAAATATACGAGGGGATCTTTCATATGCTGCGCCAAATCTATGCTCTGAACCACTGATGAAGATGCTACTGAGGCCTCAACTCGTTAGCCTTCACGGAGCCACCTTACACCAGGATTCAGCTAACAATTTAGTAAAGATACAGGACATGAAGGACATGCAGCCAGAAACCAATTCTAAAATGAAGCAGCTTATTCCGACAGAAACTGCATCTCCCGGGAATCAAAATCCTACACAATCTGATCCCATAAACCCAAATTCATCACCAAAAGAAAGTCTACCAGGAAAAGTGCACACTTCAGCGGCTGCTGAAAGTGAACCTCCAACTGGAGCTGATGATGTTTCAACCAATCAGTCCAATACATTGCCCCCGGTCGGAGATTGTGTGGGGGAAAAACCCACTGCTAAAGAAGTGAATATGCAGACCCTTGTGAACCAGCTCTCATTTATGAACCAGAATCAGATCCCCATGCAGTCATGGCCGTTGCAGCCTCAGCTTGAATCACTAATCCAACACCCACAACCAATTGACATGCCCCAGCCTGAATTTACGCTGGATGGTGATGGATGTTTGATTAACCCATCCTGTCTGCCTCTTCCTGGAGTAATGATATCACCCGGGAACCTTTCCATGTTGGCATTGCAAGAATCCTCAACAGTCTTCCCTGAGGCTCTTAATTTTCCCTTACCCTCAACTGGGCAAGACATGTGGGATCCTCTTAATAATATAAGATTCTCTTCTAACCTGAATTGTATGGGTAATGCAAATGTTATGAGAGCTGTTTCAGACGAGAGCAACAACCAAAGTGGGATATATAGTTGTTCAAACCTTGAAATCAGTAATGGTGGAAATACTTTGGTTGATCCTGCTGTTTCGAGTACTATTCTTGATGATTATTGCACATTGAAAGATGCTGACTTCCCACATCCTTCGGATTGCTTGGTTGGAAACTTCAGCTCAAGCCAAGATGTTCAGTCTCAGATTACCTCTGCTGCTAGTCTTGGAGATTCTCAGGCTTTCTCCAGGCAAGACTTCCATGATAATTCAGGTGGTACTTCCTCTTGCAATGTGGATTTTGATGAGGGCAGTCTTCTGCATAACGGCTCCTGGAATCAAGTCGTACCGCCCATGAGAACTTACACCAAGGTCCAGAAGGCAGGATCTGTTGGGAGGTCTATTGATGTCACTAGTTTTAAGAACTACGACGAACTGTGCTCCGCTATCGAATGCATGTTTGGACTTGAAGGGTTGCTTAATGACCCGAGAGGCTCAGGATGGAAACTGGTTTATGTTGATTATGAGAACGACGTCTTGCTTATTGGAGATGATCCATGGGAGGAATTTGTGAGCTGTGTACGGTGCATCAGAATCTTGTCACCTTCAGAAGTTAAGCAAATGAGCGAAGAGGGAATGAAGCTTCTCAACAGTGCTATGATGCAAGGCATCAATTGCTCCATGCCAGAAGGTGGCCGAGGTTAA 2739 45.86 MSSVEDKLKTPMGLVNNTPQTNLLDEMKLLKQMQDQTGARKAINSELWHACAGPLVSLPHVGSLVYYFPQGHSEQVAVSTKRTATSQIPNYPNLPSQLMCQVQSITLHADKDSDEIYAQMSLQPVNSERDVFLVPDFGLRPSKHPNEFFCKTLTASDTSTHGGFSVPRRAAEKLFPPLDYTMQPPTQELVVRDLHDNTWTFRHIYRGQPKRHLLTTGWSLFVGSKRLRAGDSVLFIRDEKSQLLIGVRRANRQQTTLPSSVLSADSMHIGVLAAAAHAAANRSPFTIFYNPRACPSEFVIPLAKYRKCVFGTQLSAGMRFGMMFETEESGKRRYMGTIVGISDLDPLRWPGSKWRNLQVEWDEPGCCDKQNRVSSWEIETPESLFIFPSLTSGLKRPLHGGFLGETDWESLVKRPMLRVPENIRGDLSYAAPNLCSEPLMKMLLRPQLVSLHGATLHQDSANNLVKIQDMKDMQPETNSKMKQLIPTETASPGNQNPTQSDPINPNSSPKESLPGKVHTSAAAESEPPTGADDVSTNQSNTLPPVGDCVGEKPTAKEVNMQTLVNQLSFMNQNQIPMQSWPLQPQLESLIQHPQPIDMPQPEFTLDGDGCLINPSCLPLPGVMISPGNLSMLALQESSTVFPEALNFPLPSTGQDMWDPLNNIRFSSNLNCMGNANVMRAVSDESNNQSGIYSCSNLEISNGGNTLVDPAVSSTILDDYCTLKDADFPHPSDCLVGNFSSSQDVQSQITSAASLGDSQAFSRQDFHDNSGGTSSCNVDFDEGSLLHNGSWNQVVPPMRTYTKVQKAGSVGRSIDVTSFKNYDELCSAIECMFGLEGLLNDPRGSGWKLVYVDYENDVLLIGDDPWEEFVSCVRCIRILSPSEVKQMSEEGMKLLNSAMMQGINCSMPEGGRG 912
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 540845 545614 + CmoCh09G001150.1 Cmo09g00115 388117
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo09g00115 912 SUPERFAMILY CAD & PB1 domains 798 877 - -
Cmo09g00115 912 MobiDBLite consensus disorder prediction 487 514 - -
Cmo09g00115 912 CDD B3_DNA 148 249 IPR003340 GO:0003677
Cmo09g00115 912 MobiDBLite consensus disorder prediction 530 544 - -
Cmo09g00115 912 SUPERFAMILY DNA-binding pseudobarrel domain 136 278 IPR015300 -
Cmo09g00115 912 Gene3D - 147 250 IPR015300 -
Cmo09g00115 912 ProSiteProfiles B3 DNA-binding domain profile. 149 251 IPR003340 GO:0003677
Cmo09g00115 912 Pfam Auxin response factor 275 358 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Cmo09g00115 912 Gene3D - 795 887 - -
Cmo09g00115 912 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 30 902 IPR044835 GO:0003677|GO:0006355|GO:0009725
Cmo09g00115 912 ProSiteProfiles PB1 domain profile. 798 882 IPR000270 GO:0005515
Cmo09g00115 912 PANTHER AUXIN RESPONSE FACTOR 5 30 902 - -
Cmo09g00115 912 Pfam B3 DNA binding domain 149 250 IPR003340 GO:0003677
Cmo09g00115 912 Gene3D - 313 385 - -
Cmo09g00115 912 MobiDBLite consensus disorder prediction 487 552 - -
Cmo09g00115 912 Pfam AUX/IAA family 799 885 IPR033389 -
Cmo09g00115 912 SMART B3_2 149 251 IPR003340 GO:0003677
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo01g02017 Cmo09g00115 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo09g00115 Cmo-Chr9:540845 Cmo15g00807 Cmo-Chr15:3977365 1.29E-28 dispersed
Cmo01g02017 Cmo-Chr1:14190585 Cmo09g00115 Cmo-Chr9:540845 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10320 PF02309 AUX_IAA 9.70E-10 CL0072 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo09g00115 K14486 - csv:101216825 1675.6