Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo09g00122 ATGGCGCGAGGGAAGATCCAGATCAAGCGAATCGAAAACCCTACGAACAGGCAGGTCACCTACTCCAAGCGACGCAACGGCCTCTTCAAAAAGGCCAACGAGCTCACCGTCCTCTGCGATGCCAAAGTCTCCATCATCATGTTTTCCAGCACTGGAAAACTCCACGAGTATATCAGCCCTTCCACCTCGACCAAGGAGCTTTTCGATCAGTACCAGAAGACTCTAGGCGTTGATCTATGGATCTCTCACTACCAGAGAATGCAAGAGAATCTGAAGAAGCTCAAAGACGTGAATCGCAGCCTTCGCAGGCAGATTATGCAAAGGATGGGGGAATGCATGAATGATCTGAGTTTTGAGGAACTGCGCTGTCTTGAGCAAGATATGGATAATGCCGTCAGGATCATCCGTGAACGCAAGTACCGGGTGATATCAAACCAGATTGAAACGCACAAGAAGAAGTTGAAGAGCGTAGGAGAAATACACAAGAGTCTTCTTCAGGAGTTTGATATTGCAACAGAGGAAGATCCACATTATGGGCTGGTGGACAATGGAGGTGTCGGAGTCGGAGTAGGAGTAGGCGTAGGAGTAGGCGGAGGAGATTATGACTCAGTTATGGGGTACCACCCAGGCGGTGCCCATCCTCGCATATTCGCCTTGCGCCTCCAGCCCAACCACCCCAATATTCACCTTCAACACCCTCCCCCTCCAGATCTCACTACCTATCCACTCCTTGAGTAG 738 50.41 MARGKIQIKRIENPTNRQVTYSKRRNGLFKKANELTVLCDAKVSIIMFSSTGKLHEYISPSTSTKELFDQYQKTLGVDLWISHYQRMQENLKKLKDVNRSLRRQIMQRMGECMNDLSFEELRCLEQDMDNAVRIIRERKYRVISNQIETHKKKLKSVGEIHKSLLQEFDIATEEDPHYGLVDNGGVGVGVGVGVGVGGGDYDSVMGYHPGGAHPRIFALRLQPNHPNIHLQHPPPPDLTTYPLLE 245
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 563424 565525 - CmoCh09G001220.1 Cmo09g00122 388124
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo09g00122 245 Pfam K-box region 82 168 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cmo09g00122 245 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Cmo09g00122 245 Gene3D - 13 79 IPR036879 GO:0003677|GO:0046983
Cmo09g00122 245 Coils Coil 84 104 - -
Cmo09g00122 245 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Cmo09g00122 245 SUPERFAMILY SRF-like 3 95 IPR036879 GO:0003677|GO:0046983
Cmo09g00122 245 MobiDBLite consensus disorder prediction 228 245 - -
Cmo09g00122 245 MobiDBLite consensus disorder prediction 225 245 - -
Cmo09g00122 245 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 230 - -
Cmo09g00122 245 CDD MADS_MEF2_like 2 80 IPR033896 GO:0000977|GO:0045944
Cmo09g00122 245 ProSiteProfiles K-box domain profile. 84 174 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cmo09g00122 245 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Cmo09g00122 245 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Cmo09g00122 245 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Cmo09g00122 245 PANTHER APETALA3 1 230 - -
Cmo09g00122 245 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Cmo09g00122 245 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo01g02003 Cmo09g00122 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo09g00122 Cmo-Chr9:563424 Cmo09g00760 Cmo-Chr9:3841900 4.06E-42 dispersed
Cmo01g02003 Cmo-Chr1:14129143 Cmo09g00122 Cmo-Chr9:563424 6.64E-147 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10321 PF01486 K-box 1.20E-20 No_clan Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo09g00122 K09264 - csv:101218008 397.127