Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo09g00127 ATGCTTTCCCAATGGTTCGATTCCATATGCACCGCAAATGAGGCTTCCCTATTGCTCGTTCATTTCCATGTCTTCTTTTACTTCTACCGCTTTAAATTGAGCCATTTAGGTTTGTATTTGTTCAGTTCTCTCGTTGGACGACCATCTTACAGACTGATTGTCGTGGACTTCACTGCCGCATGGTGCGGTCCGTGCCGTGCCATCGCTCCAGTTTTTGCAGAGTTGGCTAAGAAGATGAGTAATGATATATTCTTGAAGGTCGATGTTGATAAATTGAATACTGTTGCTGCGGAATGGGGAGTGAGTGCTCTCCCTTGTTTCATGTTCTTGAAGAATGGGAAGGTGGTGGGCAGGTTTGTCGGTGCAAGAAAAGATGCATTGCAGAAGATTGTTTTACAGCATGCCTAA 408 44.61 MLSQWFDSICTANEASLLLVHFHVFFYFYRFKLSHLGLYLFSSLVGRPSYRLIVVDFTAAWCGPCRAIAPVFAELAKKMSNDIFLKVDVDKLNTVAAEWGVSALPCFMFLKNGKVVGRFVGARKDALQKIVLQHA 135
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 586308 587339 + CmoCh09G001270.1 Cmo09g00127 388129

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo09g00127 135 PANTHER THIOREDOXIN 49 135 - -
Cmo09g00127 135 SUPERFAMILY Thioredoxin-like 45 134 IPR036249 -
Cmo09g00127 135 CDD TRX_family 49 131 - -
Cmo09g00127 135 Gene3D Glutaredoxin 41 135 - -
Cmo09g00127 135 PRINTS Thioredoxin family signature 53 61 - -
Cmo09g00127 135 PRINTS Thioredoxin family signature 61 70 - -
Cmo09g00127 135 PRINTS Thioredoxin family signature 100 111 - -
Cmo09g00127 135 ProSiteProfiles Thioredoxin domain profile. 6 135 IPR013766 -
Cmo09g00127 135 ProSitePatterns Thioredoxin family active site. 54 72 IPR017937 -
Cmo09g00127 135 PANTHER THIOREDOXIN 49 135 - -
Cmo09g00127 135 Pfam Thioredoxin 49 131 IPR013766 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo09g00127 K03671 trxA; thioredoxin 1 - csv:101219430 155.221
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo05g00278 Cmo09g00127 CCT
Cmo05g00278 Cmo09g00127 ECH
Cmo01g01998 Cmo09g00127 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo09g00127 Cmo-Chr9:586308 Cmo14g00618 Cmo-Chr14:3116941 4.17E-30 dispersed
Cmo01g01998 Cmo-Chr1:14111135 Cmo09g00127 Cmo-Chr9:586308 3.68E-52 wgd
Cmo12g00390 Cmo-Chr12:2418405 Cmo09g00127 Cmo-Chr9:586308 7.84E-33 wgd
Cmo03g00737 Cmo-Chr3:6272425 Cmo09g00127 Cmo-Chr9:586308 1.35E-35 wgd
Cmo05g00278 Cmo-Chr5:1196725 Cmo09g00127 Cmo-Chr9:586308 1.98E-28 wgd
Cmo07g00452 Cmo-Chr7:2074997 Cmo09g00127 Cmo-Chr9:586308 2.85E-33 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1017 . . . . . . . . Cmo05g00278 . Cma01g01935 Cma09g00130 Car01g01512 . . Cpe06g00089 . Bhi04g00210 . . . Hepe10g0603 . . Cla08g01455 Cam08g1940 Cec08g1514 Cco08g1653 Clacu08g1630 . Cre08g1416 Cone4ag1941 . . Cone20ag0114 Lsi04g01706 Csa03g04245 . Cme03g01918 . . . Bda01g01515 Bpe02g01711 . Bma01g00744 . . Cmo01g01998 Cmo09g00127 . Cma05g00273 Car05g00226 Car09g00116 Cpe11g00226 Cpe02g00101 . . . . . . . Cla05g01907 Cam05g2044 Cec05g2053 Cco05g2107 Clacu05g2036 Cmu05g1915 Cre05g2037 Lsi08g01361 Csa02g02094 Chy03g01421 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000895 2 4 1 1 1 4 3 4 4 4 2 4 3 3 4 3 4 3 3 4 4 2 2 3 2 3 3 6 2 0 88
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo09g00127 Cmo_Chr09 FPKM 6.186301 6.752639 11.632386 12.604633 31.958532 31.021975 33.805107 15.507962 14.63131 15.951346