Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo09g00132 ATGGCAGGGGGCCTCGTAATAAAACGTGAGCAACTCCCAAAGTGCGAGTATCGAAACGACCCCGTTTTGATCAAACCAATCAGCAAAACTCCGAATCACATTCTTCCACTTTCCGACGTGGACGATCAAGCATTCCTGAGATTTTCGATAAAGTGTGTTTTGGTCTTCAGAGGATCGATGGAAGCAGAGTGGTTGAAATGCGGTCTTTCGAGAGTTCTAGTGGATTATTATCCTCTGGCTGGGCGGCTCAGGACCTGTCCCCAACACCTTCACAAGCTTCAAGTTGATTGCAATGGAGAGGGCGCTTTGTTTGCTGAAGCCTTCTTGGACGTCCACTCTCACCATTTTCTCTCGTTTACTTCCAATCCAGACGCCTCTTGGTCAACCCTTTTGTATAAGCCTAAGGTTGATGCCCTAAATTTCGCCCAACTCCCTCCTCTCCTTCTTCAGGTTACATATCTCCGGTGTGGAGGTATGATTCTAAGCACGGCAATCCATCACTGTTTATGTGACGGCATCGGAACGTCTCAATTTCTGCATGCCTGGGCCCACATAACTTCCCAATCAAATCTCTCCCCTCCACTAACCCCACCGTTCCACAGCCGCCACGTGCTATCTCACCGAGGCCCCACCAGAATCCACTGCGCTCACCCTCAGTATACCAAAACCCCACGCGCCAACTGGGACGTCGACGTAACCAAGTCCCTCCAATCTCAGCCGTTGGTCCCTTCTTCCTCGATCTTCACCACTTCTCAAATCCTCCGCATCAAACCGTCGTTCAACTGCACCACATTCGAAACCCTTGCTTCGCACACGTGGCGCTCTTGGATTCGCTCGCTCGACCTCCCTCCTTCGCTCCACGTCAAGCTCCTTTTCCCTGTAAATATCCGCAACAAACTTGTCCCCAAAATCCCTGAAGGCTATTACGGAAACGCCTTTGTTCTTGGATGCGCTGAATCTTCTGTTAACGAATTGACCGTCGCCGAAGACTTAAACGGCGTCGTTCGCTTGGTGCAGAACGCGAAATCGATCATCGATGACGATTACATCAAGTCGACGATCTTTCAGCTGGAGGACAAAAGCCTCCAAGCCGACTTGTCGGCCAGTTTAGTTATATCGGACTGGTCGAAATTGGGTTTACAGGACTTGGATTTTGGGCTTGGGAAGCCTCTTGTAATGAGCCCTTTGTCCAGCGATGTCTTCTGCTTGTTTCTGCCGGTGATCGGAGATGTTAAGGCCGTGAGAGTGCTCGTGTCGGTTCCGGTGAATGTGGTTGAGAAGTTTGAGTATTACATGACCGGAGAGTACTTTTCCGATGGAGAAACGAACGTTTGA 1335 50.19 MAGGLVIKREQLPKCEYRNDPVLIKPISKTPNHILPLSDVDDQAFLRFSIKCVLVFRGSMEAEWLKCGLSRVLVDYYPLAGRLRTCPQHLHKLQVDCNGEGALFAEAFLDVHSHHFLSFTSNPDASWSTLLYKPKVDALNFAQLPPLLLQVTYLRCGGMILSTAIHHCLCDGIGTSQFLHAWAHITSQSNLSPPLTPPFHSRHVLSHRGPTRIHCAHPQYTKTPRANWDVDVTKSLQSQPLVPSSSIFTTSQILRIKPSFNCTTFETLASHTWRSWIRSLDLPPSLHVKLLFPVNIRNKLVPKIPEGYYGNAFVLGCAESSVNELTVAEDLNGVVRLVQNAKSIIDDDYIKSTIFQLEDKSLQADLSASLVISDWSKLGLQDLDFGLGKPLVMSPLSSDVFCLFLPVIGDVKAVRVLVSVPVNVVEKFEYYMTGEYFSDGETNV 444
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 611454 613227 + CmoCh09G001320.1 Cmo09g00132 388134

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo09g00132 444 Gene3D - 230 433 IPR023213 -
Cmo09g00132 444 Gene3D - 18 222 IPR023213 -
Cmo09g00132 444 PANTHER TRICHOTHECENE 3-O-ACETYLTRANSFERASE 14 433 - -
Cmo09g00132 444 Pfam Transferase family 23 430 - -
Cmo09g00132 444 PANTHER BNAC03G58010D PROTEIN 14 433 - -
Cmo09g00132 444 SUPERFAMILY CoA-dependent acyltransferases 48 200 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo09g00132 - - - csv:101205368 674.855
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo09g00132 Cmo12g00396 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo09g00132 Cmo-Chr9:611454 Cmo11g00021 Cmo-Chr11:95780 9.12E-68 dispersed
Cmo04g00138 Cmo-Chr4:705335 Cmo09g00132 Cmo-Chr9:611454 2.97E-77 transposed
Cmo12g00396 Cmo-Chr12:2468400 Cmo09g00132 Cmo-Chr9:611454 2.26E-147 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g992 . . . . . . . . . Cmo12g00396 . Cma09g00136 . Car12g00421 . Cpe06g00095 Cpe07g00400 Bhi04g00196 . . . Hepe10g0614 . . Cla08g01464 Cam08g1952 Cec08g1527 Cco08g1665 Clacu08g1642 . Cre08g1427 . . . Cone20ag0123 Lsi04g01699 Csa03g04240 Chy04g00476 Cme03g01930 . Blo18g00804 . Bda01g01509 . . Bma01g00751 . . . Cmo09g00132 Cma12g00446 . . Car09g00122 . . . . . . . . . Cla05g01912 Cam05g2049 Cec05g2060 Cco05g2114 Clacu05g2044 Cmu05g1921 Cre05g2044 Lsi08g01373 Csa02g02078 Chy03g01435 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014511 0 0 0 0 0 1 1 1 1 1 1 1 1 0 1 1 1 0 1 1 1 1 1 1 1 1 1 0 1 0 21
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo09g00132 Cmo_Chr09 FPKM 8.091691 9.845102 12.21658 10.949113 32.294399 32.912098 35.865372 16.421782 17.968369 15.013187