Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo09g00146 ATGCCTCTGAGAGGCATAGTTCGTGAGCAGAGTGAAATACGAGAAGGCAGTGAGAATTGTTCGAGAAAAGTGAGGGAGGGAGTTCAAATGCGTCATCTCGGGAAGTCGCATATTGTCCCGGAGCAGCCTTCTTCTTCATCTTTTCCGGTTCCGATCGAACAGAGCCGTTGGGCGAGTTTACCTCCGGAGCTTCTTTTGGACATAATTCAACGAGTGGAAGCGAGTGAAACCTCTTGGCCTTCCCGCCGGGATGTTGTTGCCTGTGCTTCAGTTTGCAGGTCATGGCGGATGATTACAAAGGAAGTCGTAAGGACTCCCGAACAGTGTGGGTGGATCACTTTCCCAATTTCTCTGAAGCAGCCGGGACCAAGAGACACTCCGATCCAGTGCTTCATCAAGAGAGAAAGGGCAACGTCAACGTTTCGACTTTATCTCGGGCTAAGCCCCGCCCTGTCGGGTAATCTAAGTAAACTTTTGCTTACTGCAAAAAGATTTCGACGAGCCATGAGTACAGAGTTCATTGTATCATTAGTTCCAGACGACTTCTCTCGAGCAAGCAACAATTACATTGGAAAGTTAAGGTCAAATTTTCTGGGGACCAAGTTTTCGATTTACGACAGTCAGCCTCCACATGACCCAAAACTGCCAACCAGTAGATCAAAGCGAAGAATCCATTTGAAACAGGTTTCTCCAAGTAAAACTCCGACGAACTATACAGTTGCTGCCGTAGCTTACGAGCTGAACGTCCTCCGCACGAGAGGCCCGAGACGAATGAGGTGCACCATGCATTCAATACCTGTTGCAGCCGTGGAGGAGGGTGGCACTGCCCCAACTCCCACGGAGTTTAAAGACTGTATCAATGAGCATCATTCATCGACATCGATTTGCGAAGGTAAGAAGCCGGTAATCGAGTGTCCGAAGCCTCAAGAATCAATGGCTCCATTGGTATTGAAGAACAAAGCTCCGAGATGGCACGAACAGCTTCAGTGCTGGTGCCTCAATTTCAAAGGGCGCGTCACGGTAGCCTCGGTGAAAAACTTTCAGCTGGTTGCTGCTGTGGAGACAAGTGAAAATGTGTCTGCAGCTGAACAAGAGCGAGTGATTTTGCAGTTTGGTAAGATTGGAAAGGATATTTTTACGATGGATTATCGGTATCCTCTCTCAGCTTTCCAAGCCTTTGCAATTTGCCTTAGTAGCTTTGACACCAAGCCGGCCTGTGAATGA 1224 48.37 MPLRGIVREQSEIREGSENCSRKVREGVQMRHLGKSHIVPEQPSSSSFPVPIEQSRWASLPPELLLDIIQRVEASETSWPSRRDVVACASVCRSWRMITKEVVRTPEQCGWITFPISLKQPGPRDTPIQCFIKRERATSTFRLYLGLSPALSGNLSKLLLTAKRFRRAMSTEFIVSLVPDDFSRASNNYIGKLRSNFLGTKFSIYDSQPPHDPKLPTSRSKRRIHLKQVSPSKTPTNYTVAAVAYELNVLRTRGPRRMRCTMHSIPVAAVEEGGTAPTPTEFKDCINEHHSSTSICEGKKPVIECPKPQESMAPLVLKNKAPRWHEQLQCWCLNFKGRVTVASVKNFQLVAAVETSENVSAAEQERVILQFGKIGKDIFTMDYRYPLSAFQAFAICLSSFDTKPACE 407
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 656942 659745 + CmoCh09G001460.1 Cmo09g00146 388148
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo09g00146 407 SUPERFAMILY F-box domain 44 100 IPR036047 GO:0005515
Cmo09g00146 407 Gene3D - 52 105 - -
Cmo09g00146 407 PANTHER TUBBY-LIKE F-BOX PROTEIN 1 407 - -
Cmo09g00146 407 Pfam F-box domain 57 104 IPR001810 GO:0005515
Cmo09g00146 407 PRINTS Tubby superfamily signature 173 189 IPR000007 -
Cmo09g00146 407 PRINTS Tubby superfamily signature 189 213 IPR000007 -
Cmo09g00146 407 PRINTS Tubby superfamily signature 237 264 IPR000007 -
Cmo09g00146 407 PRINTS Tubby superfamily signature 317 334 IPR000007 -
Cmo09g00146 407 PRINTS Tubby superfamily signature 335 351 IPR000007 -
Cmo09g00146 407 PRINTS Tubby superfamily signature 364 383 IPR000007 -
Cmo09g00146 407 PRINTS Tubby superfamily signature 385 407 IPR000007 -
Cmo09g00146 407 Gene3D Tubby Protein; Chain A 115 407 IPR025659 -
Cmo09g00146 407 PANTHER TUBBY-RELATED 1 407 - -
Cmo09g00146 407 ProSitePatterns Tub family signature 2. 392 407 IPR018066 -
Cmo09g00146 407 Pfam Tub family 118 402 IPR000007 -
Cmo09g00146 407 ProSitePatterns Tub family signature 1. 335 348 IPR018066 -
Cmo09g00146 407 SUPERFAMILY Tubby C-terminal domain-like 106 407 IPR025659 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo01g01979 Cmo09g00146 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g00803 Cmo-Chr4:4013710 Cmo09g00146 Cmo-Chr9:656942 0 dispersed
Cmo06g01463 Cmo-Chr6:10551013 Cmo09g00146 Cmo-Chr9:656942 1.58E-126 dispersed
Cmo09g00146 Cmo-Chr9:656942 Cmo16g00672 Cmo-Chr16:3330233 0 dispersed
Cmo01g01979 Cmo-Chr1:14009925 Cmo09g00146 Cmo-Chr9:656942 0 wgd
Cmo07g00480 Cmo-Chr7:2191845 Cmo09g00146 Cmo-Chr9:656942 2.09E-169 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10323 PF01167 Tub 8.50E-106 CL0395 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo09g00146 K19600 - csv:101222500 752.666