Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo09g00146 | ATGCCTCTGAGAGGCATAGTTCGTGAGCAGAGTGAAATACGAGAAGGCAGTGAGAATTGTTCGAGAAAAGTGAGGGAGGGAGTTCAAATGCGTCATCTCGGGAAGTCGCATATTGTCCCGGAGCAGCCTTCTTCTTCATCTTTTCCGGTTCCGATCGAACAGAGCCGTTGGGCGAGTTTACCTCCGGAGCTTCTTTTGGACATAATTCAACGAGTGGAAGCGAGTGAAACCTCTTGGCCTTCCCGCCGGGATGTTGTTGCCTGTGCTTCAGTTTGCAGGTCATGGCGGATGATTACAAAGGAAGTCGTAAGGACTCCCGAACAGTGTGGGTGGATCACTTTCCCAATTTCTCTGAAGCAGCCGGGACCAAGAGACACTCCGATCCAGTGCTTCATCAAGAGAGAAAGGGCAACGTCAACGTTTCGACTTTATCTCGGGCTAAGCCCCGCCCTGTCGGGTAATCTAAGTAAACTTTTGCTTACTGCAAAAAGATTTCGACGAGCCATGAGTACAGAGTTCATTGTATCATTAGTTCCAGACGACTTCTCTCGAGCAAGCAACAATTACATTGGAAAGTTAAGGTCAAATTTTCTGGGGACCAAGTTTTCGATTTACGACAGTCAGCCTCCACATGACCCAAAACTGCCAACCAGTAGATCAAAGCGAAGAATCCATTTGAAACAGGTTTCTCCAAGTAAAACTCCGACGAACTATACAGTTGCTGCCGTAGCTTACGAGCTGAACGTCCTCCGCACGAGAGGCCCGAGACGAATGAGGTGCACCATGCATTCAATACCTGTTGCAGCCGTGGAGGAGGGTGGCACTGCCCCAACTCCCACGGAGTTTAAAGACTGTATCAATGAGCATCATTCATCGACATCGATTTGCGAAGGTAAGAAGCCGGTAATCGAGTGTCCGAAGCCTCAAGAATCAATGGCTCCATTGGTATTGAAGAACAAAGCTCCGAGATGGCACGAACAGCTTCAGTGCTGGTGCCTCAATTTCAAAGGGCGCGTCACGGTAGCCTCGGTGAAAAACTTTCAGCTGGTTGCTGCTGTGGAGACAAGTGAAAATGTGTCTGCAGCTGAACAAGAGCGAGTGATTTTGCAGTTTGGTAAGATTGGAAAGGATATTTTTACGATGGATTATCGGTATCCTCTCTCAGCTTTCCAAGCCTTTGCAATTTGCCTTAGTAGCTTTGACACCAAGCCGGCCTGTGAATGA | 1224 | 48.37 | MPLRGIVREQSEIREGSENCSRKVREGVQMRHLGKSHIVPEQPSSSSFPVPIEQSRWASLPPELLLDIIQRVEASETSWPSRRDVVACASVCRSWRMITKEVVRTPEQCGWITFPISLKQPGPRDTPIQCFIKRERATSTFRLYLGLSPALSGNLSKLLLTAKRFRRAMSTEFIVSLVPDDFSRASNNYIGKLRSNFLGTKFSIYDSQPPHDPKLPTSRSKRRIHLKQVSPSKTPTNYTVAAVAYELNVLRTRGPRRMRCTMHSIPVAAVEEGGTAPTPTEFKDCINEHHSSTSICEGKKPVIECPKPQESMAPLVLKNKAPRWHEQLQCWCLNFKGRVTVASVKNFQLVAAVETSENVSAAEQERVILQFGKIGKDIFTMDYRYPLSAFQAFAICLSSFDTKPACE | 407 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 656942 | 659745 | + | CmoCh09G001460.1 | Cmo09g00146 | 388148 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo09g00146 | 407 | SUPERFAMILY | F-box domain | 44 | 100 | IPR036047 | GO:0005515 | |
Cmo09g00146 | 407 | Gene3D | - | 52 | 105 | - | - | |
Cmo09g00146 | 407 | PANTHER | TUBBY-LIKE F-BOX PROTEIN | 1 | 407 | - | - | |
Cmo09g00146 | 407 | Pfam | F-box domain | 57 | 104 | IPR001810 | GO:0005515 | |
Cmo09g00146 | 407 | PRINTS | Tubby superfamily signature | 173 | 189 | IPR000007 | - | |
Cmo09g00146 | 407 | PRINTS | Tubby superfamily signature | 189 | 213 | IPR000007 | - | |
Cmo09g00146 | 407 | PRINTS | Tubby superfamily signature | 237 | 264 | IPR000007 | - | |
Cmo09g00146 | 407 | PRINTS | Tubby superfamily signature | 317 | 334 | IPR000007 | - | |
Cmo09g00146 | 407 | PRINTS | Tubby superfamily signature | 335 | 351 | IPR000007 | - | |
Cmo09g00146 | 407 | PRINTS | Tubby superfamily signature | 364 | 383 | IPR000007 | - | |
Cmo09g00146 | 407 | PRINTS | Tubby superfamily signature | 385 | 407 | IPR000007 | - | |
Cmo09g00146 | 407 | Gene3D | Tubby Protein; Chain A | 115 | 407 | IPR025659 | - | |
Cmo09g00146 | 407 | PANTHER | TUBBY-RELATED | 1 | 407 | - | - | |
Cmo09g00146 | 407 | ProSitePatterns | Tub family signature 2. | 392 | 407 | IPR018066 | - | |
Cmo09g00146 | 407 | Pfam | Tub family | 118 | 402 | IPR000007 | - | |
Cmo09g00146 | 407 | ProSitePatterns | Tub family signature 1. | 335 | 348 | IPR018066 | - | |
Cmo09g00146 | 407 | SUPERFAMILY | Tubby C-terminal domain-like | 106 | 407 | IPR025659 | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cmo01g01979 | Cmo09g00146 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo04g00803 | Cmo-Chr4:4013710 | Cmo09g00146 | Cmo-Chr9:656942 | 0 | dispersed | |
Cmo06g01463 | Cmo-Chr6:10551013 | Cmo09g00146 | Cmo-Chr9:656942 | 1.58E-126 | dispersed | |
Cmo09g00146 | Cmo-Chr9:656942 | Cmo16g00672 | Cmo-Chr16:3330233 | 0 | dispersed | |
Cmo01g01979 | Cmo-Chr1:14009925 | Cmo09g00146 | Cmo-Chr9:656942 | 0 | wgd | |
Cmo07g00480 | Cmo-Chr7:2191845 | Cmo09g00146 | Cmo-Chr9:656942 | 2.09E-169 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
10323 | PF01167 | Tub | 8.50E-106 | CL0395 | Cmo | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo09g00146 | K19600 | - | csv:101222500 | 752.666 |