Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo09g00163 ATGGAGAGCGCCTTTGCGAGCGCCTTTGCGAGCGCCTCTGCTATCTCAGACCAGAGGCAGAAGATCGAACAGTATAAGAACATTCTGTATAATGTTTTGTCGTCAAACGATTCAGTCCAAGCCAAGAAGTTTATCGATCACACACTATCTGACGAAGTTCCGCTTGTGGTTTCGCGGCAGCTCTTGCAAACTCTTGCGCAAGAGTTGGGGAAATTGGAGGGTGAGACTCAGAAAGATATCGCCCATTACATCCTCGCACAGATTCAGCCGCGCGTTGTCTCTTTCGAGGAGCAGGTGTTGATTATTCGAGAGAAGCTTGCTGAATTGTATGAATCAGAGCAGCAATGGTCAAAAGCTGCTCAGATGCTCAGTGGCATCGATCTAGACTCTGGAATGAGTTACCTTTTTATGGTCTTTGTCAGAGTGATCGACGAGTCATACAGATTGTCAAAATGTGTTCAAATTGCTCTATACTTCTGTAGCTTTAATTTAATTCCTACAACGGTATTTATAACAAAGGGCTATATTTTAGTAGTGGCAATTTGCTATGAGGTCATTCTTGCTCAATTTCTTCAACAGGATGATGATGCTGTTAATGCTGAGGCTTTTATCAATAAAGCATCATTCTTGGTTAGCAATAGTCAGCACGAAGTCCTTAATTTACAATACAAGGTTTGCTATGCTAGGATCTTAGACTTGAAAAGGAAGTTCTTGGAAGCAGCACTGCGTTATTATGATATATCTCAAATTGAAAAGAGACAAATAGGAGATGAAGAAATCAACGAAGAAGCATTGGAACAAGCTTTATCTGCTGCAGTGACATGCACAATATTGGCTGCTGCTGGTCCACAACGATCCCGAGTTCTTGCCACATTATACAAAGTTTACTTGGAGAGAATTTTGAGGAAGCCTGAAATTGATGCATTTGCTGAAGAGCTAAAGCCTCACCAGCAAGCCCTTCTGCCAGATAATTTTACTGTGTTGGATCGTGCTATGATTGAGCATAATCTTCTCAGTGCAAGCAAACTCTACACAAATATAAGGTCAAATATGTGTAGTTTATCATCTCGTCCTCCTTTATTCCTTTTTTCTCGTTTTACTATTGTTTTTGGTTATTCCTGTCGCAGCTTCGAAGAGTTAGGCACTTTGTTGGGTATTCCTCCTCATAAGGCTGAGAAGATAGCATCCAGAATGATCTATGAGGACAGAATGCGGGGATCAATTGACCAGGTTGAAGCTATTATCCATTTCGAGGACGATATTGAAGAGCTGCAGCAATGGGATCAACAGGTTCACTTAAATTGCGCGCGGCACATGTTATGGAAAATTTTAGATATCAGCATTTATGACAATGACAATATTGTTGGTCTTTGTCAAGCTCTGAACGACATCTTTGATAGCATGGCAAATAAAGGGGTCTCCCTTCCCGTCTGA 1434 41.49 MESAFASAFASASAISDQRQKIEQYKNILYNVLSSNDSVQAKKFIDHTLSDEVPLVVSRQLLQTLAQELGKLEGETQKDIAHYILAQIQPRVVSFEEQVLIIREKLAELYESEQQWSKAAQMLSGIDLDSGMSYLFMVFVRVIDESYRLSKCVQIALYFCSFNLIPTTVFITKGYILVVAICYEVILAQFLQQDDDAVNAEAFINKASFLVSNSQHEVLNLQYKVCYARILDLKRKFLEAALRYYDISQIEKRQIGDEEINEEALEQALSAAVTCTILAAAGPQRSRVLATLYKVYLERILRKPEIDAFAEELKPHQQALLPDNFTVLDRAMIEHNLLSASKLYTNIRSNMCSLSSRPPLFLFSRFTIVFGYSCRSFEELGTLLGIPPHKAEKIASRMIYEDRMRGSIDQVEAIIHFEDDIEELQQWDQQVHLNCARHMLWKILDISIYDNDNIVGLCQALNDIFDSMANKGVSLPV 477
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 723962 730659 - CmoCh09G001630.1 Cmo09g00163 388165

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo09g00163 477 Gene3D - 321 355 IPR036388 -
Cmo09g00163 477 ProSiteProfiles PCI domain profile. 236 422 IPR000717 -
Cmo09g00163 477 SUPERFAMILY Winged helix DNA-binding domain 367 422 IPR036390 -
Cmo09g00163 477 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 342 434 - -
Cmo09g00163 477 PANTHER COP9 SIGNALOSOME COMPLEX SUBUNIT 4-LIKE 372 437 - -
Cmo09g00163 477 SMART PINT_4 342 434 IPR000717 -
Cmo09g00163 477 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 12/COP9 SIGNALOSOME COMPLEX SUBUNIT 4 185 349 IPR040134 -
Cmo09g00163 477 PANTHER COP9 SIGNALOSOME COMPLEX SUBUNIT 4-LIKE 185 349 - -
Cmo09g00163 477 Pfam PCI domain 368 418 IPR000717 -
Cmo09g00163 477 Gene3D - 370 419 IPR036388 -
Cmo09g00163 477 PANTHER COP9 SIGNALOSOME COMPLEX SUBUNIT 4-LIKE 7 189 - -
Cmo09g00163 477 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 12/COP9 SIGNALOSOME COMPLEX SUBUNIT 4 7 189 IPR040134 -
Cmo09g00163 477 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 12/COP9 SIGNALOSOME COMPLEX SUBUNIT 4 372 437 IPR040134 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo09g00163 K12178 COPS4, CSN4; COP9 signalosome complex subunit 4 - csv:101204975 645.58
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo01g01961 Cmo09g00163 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g01961 Cmo-Chr1:13926781 Cmo09g00163 Cmo-Chr9:723962 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g920 . . . . . . . . . . Cma01g01896 Cma09g00166 Car01g01479 . . Cpe06g00119 . . . . . . . . . . . . . . . . . Cone17ag1332 Cone20ag0144 Lsi04g01649 Csa03g04194 Chy04g00525 . . Blo18g00821 . Bda01g01489 Bpe02g01685 . Bma01g00767 . . Cmo01g01961 Cmo09g00163 . . . Car09g00146 . Cpe02g00138 . . . . . . . Cla05g01954 Cam05g2100 Cec05g2109 Cco05g2166 Clacu05g2092 Cmu05g1968 Cre05g2086 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007182 2 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo09g00163 Cmo_Chr09 FPKM 1.3212 0.0 0.0 0.946003 0.777099 0.807951 1.48191 0.0 0.799515 1.107956