Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo09g00165 ATGGTTGATATGGAAAATTGTTCGCCGGTTGCGGTTTCCGGAGGAGATGCTTCTTTATCTTCTTCACGTTATATCGAGCCAGTGACGGCGGTAGCCCTGCCGAAGAAGAAACGGAACCTTCCCGGAATGCCAGACCCGACGGCGGAGGTGATTGCTTTGTCGGCGGAGAGTTTGCTGGCGACGAACCGGTTTGTGTGCGAGATATGCAACAAAGGCTTCCAGCGGGACCAGAACCTGCAGCTTCACCGGCGAGGCCACAACCTTCCCTGGAAGCTTCGGCAACGGACTGACAATGAGGTGCGTAAGCGCGTCTATGTCTGTCCGGAACCTACCTGCGTCCACCACAATTCGGCGAGAGCACTCGGCGATCTTACCGGAATAAAGAAGCACTTCTGCAGAAAACACGGCGAGAAGAAATGGAAGTGCGAGAGATGCTCGAAGAAATACGCGGTAAAATCTGATTGGAAAGCGCATATGAAAACTTGCGGAACTCGAGAGTACAAATGCGATTGTGGCACTTTATTTTCTAGGAGGGATAGTTTTATTACGCATCGAGCCTTTTGCGATGTATTAGCGGAGGAAAGTGCTCGTGCTCAAACCCTAGCACTTCCATACTCTAACCCGAAGGAATCGGACACGGTTTCGCCTCCCCCGCCACCGCTCACTCCGACAACCACTGTGGTATCTCCGGCGTTGTCAATTCACAGCTCAGAGCTAGCTGATACTCAGATAAGAGTTTCATCCATATTAACGCCTTCAGGCGCGGCTGTCAATAGTAGCTCAAACGATTTGTTTGGAAATAGTACTGTTTTTGCTACCTCTGCATCGTCCCCGACCGTTGCAGGCTCCAATTTACCCACCTCGATTGTGTCGTACGATTGCCCCTCTACTTGCCCTTCTGTTTCCACCGTGAATCCCACCTCGCTCTCTCTCTCCACACCTCTCTATCTTTCCACCAAAGGATCATCCTCCCTCTTTCCCCGACCTGACCAAGACCGTCTGCAGTACACGTGTTCAACTCAACCGGCGGCCATGTCCGCCACCGCTTTGCTACAGAAGGCAGCGGAAATGGGGGCAACCGCGTCTAATCCGTCGTTGTTCCGTGGCATTGGGATGGCTACTACTACTTCTTCAGTTCATGATAGGTCTGCCACTGCTAATGTGAACCGAGATCATTGCAATGGCGCTTCGTTAACGGGTGGGTTATGGCTTGAACTTCCCTCTGGACTGGCTGGTTCTGGTTTGATGATGGCGGGTGGTCCATTTTGCTCGTTTGGAAGTCAGCCCATGACGAGGGATCTTCTTGGGCTTGGCATAGACGGCGGCGGGGCCTCTACTAGTAGATTTTCAGCTTTGATCGCTTCCATGAACGGTGGGTGTGCCTACGACGAAAGCTCCACCGCCGACGCTTGGGATCGAGATGAACAAGATGGAAAATATTGA 1443 52.25 MVDMENCSPVAVSGGDASLSSSRYIEPVTAVALPKKKRNLPGMPDPTAEVIALSAESLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRTDNEVRKRVYVCPEPTCVHHNSARALGDLTGIKKHFCRKHGEKKWKCERCSKKYAVKSDWKAHMKTCGTREYKCDCGTLFSRRDSFITHRAFCDVLAEESARAQTLALPYSNPKESDTVSPPPPPLTPTTTVVSPALSIHSSELADTQIRVSSILTPSGAAVNSSSNDLFGNSTVFATSASSPTVAGSNLPTSIVSYDCPSTCPSVSTVNPTSLSLSTPLYLSTKGSSSLFPRPDQDRLQYTCSTQPAAMSATALLQKAAEMGATASNPSLFRGIGMATTTSSVHDRSATANVNRDHCNGASLTGGLWLELPSGLAGSGLMMAGGPFCSFGSQPMTRDLLGLGIDGGGASTSRFSALIASMNGGCAYDESSTADAWDRDEQDGKY 480
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 741745 744025 + CmoCh09G001650.1 Cmo09g00165 388167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo09g00165 480 Gene3D Classic Zinc Finger 64 102 - -
Cmo09g00165 480 Pfam Zinc-finger of C2H2 type 64 86 - -
Cmo09g00165 480 ProSitePatterns Zinc finger C2H2 type domain signature. 66 86 IPR013087 -
Cmo09g00165 480 Gene3D Classic Zinc Finger 103 188 - -
Cmo09g00165 480 SUPERFAMILY beta-beta-alpha zinc fingers 63 161 IPR036236 -
Cmo09g00165 480 PANTHER PROTEIN INDETERMINATE-DOMAIN 2-LIKE 30 467 - -
Cmo09g00165 480 MobiDBLite consensus disorder prediction 205 224 - -
Cmo09g00165 480 ProSiteProfiles Zinc finger C2H2 type domain profile. 64 86 IPR013087 -
Cmo09g00165 480 SMART c2h2final6 140 160 IPR013087 -
Cmo09g00165 480 SMART c2h2final6 64 86 IPR013087 -
Cmo09g00165 480 SMART c2h2final6 105 135 IPR013087 -
Cmo09g00165 480 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 30 467 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo09g00165 Cmo12g00430 CCT
Cmo09g00165 Cmo12g00430 ECH
Cmo01g01957 Cmo09g00165 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo09g00165 Cmo-Chr9:741745 Cmo16g00708 Cmo-Chr16:3529729 3.60E-108 dispersed
Cmo01g01957 Cmo-Chr1:13912614 Cmo09g00165 Cmo-Chr9:741745 0 wgd
Cmo12g00430 Cmo-Chr12:2652002 Cmo09g00165 Cmo-Chr9:741745 6.99E-136 wgd
Cmo03g00791 Cmo-Chr3:6482721 Cmo09g00165 Cmo-Chr9:741745 3.76E-112 wgd
Cmo07g00500 Cmo-Chr7:2256698 Cmo09g00165 Cmo-Chr9:741745 2.14E-118 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10324 PF12874 zf-met 0.0034 CL0361 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo09g00165 K25869 - jre:108995564 520.776