Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo09g00172 ATGACCTCCGCGCTTGTCGTCGCCCTCCTCCTCCTCGCCGTCTCCGCGGTCGCCAATGCCGCGAATTTCAGAGAAGCCCCCCAATTTTACAACTCCCCAGATTGCCCCTCCATTGCCGACGACCTCCAGGACCCCGACGCGAACGAACAACATCTCTGCTTCGATCGCGCCGTCCATGTCGCGATGACGTTGGATACCGCCTATATACGTGGCTCCATGGCTGCCGTTCTTTCCGTCCTCCAACACAGTTCTTGTCCCCAAAACGTAATTTTCCACTTCGTCTATTCCGCATCCGCCAACGTGTCGTCTTTACGCGCCGTCGTCTCCCGCTCATTCCCTTACCTGAAATTCCAACTCTACCCTTTCGACGAGGAGGCGGCATCGCGATTGATCTCCACGTCAATCCGATCCGCGTTGGACTGTCCGTTGAACTACGCACGTAGCTACTTGGGCAGCCTCCTTCCCACGTGCATCGCCCGGGTCGTGTACCTTGACTCGGATCTAATCCTAGTCGACGACATTGCGAAACTCGCCGCCCACCCACTCAGCGGGGACTCGGTCCTTGCCGCGCCGGAGTACTGCAACGCTAATTTCACCACCTACTTCACGCCGTCGTTTTGGTCCAACCCGTCTCTGTCTTTGACGTTTGCAAACCGGAAAGCGTGTTACTTCAACACGGGGGTTATGGTGATCGATCTGGACCGGTGGCGGGCCGGAGATTACACCGCCAAGATCGAGGATTGGATGGAATTGCAAAAGAGGATGAGAATCTACGAATTGGGGTCGTTGCCGCCGTTTTTGTTGGTGTTCAGCGGGAGGATTACTCCAGTGGACCACCGGTGGAACCAGCACGGGCTGGGCGGCGATAATATCAGAGGGCTGTGCAGGAATCTGCACCCTGGTCCAGTAAGTTTGTTGCACTGGAGTGGGAAAGGTAAACCGTGGGATCGATTGGTCGCGAACCGGCCCTGCCCTGTGGACGCCCTTTGGGCTCCATATGATTTGTTACAGACCCCATTTTCGATTGATTCCTAA 1035 56.33 MTSALVVALLLLAVSAVANAANFREAPQFYNSPDCPSIADDLQDPDANEQHLCFDRAVHVAMTLDTAYIRGSMAAVLSVLQHSSCPQNVIFHFVYSASANVSSLRAVVSRSFPYLKFQLYPFDEEAASRLISTSIRSALDCPLNYARSYLGSLLPTCIARVVYLDSDLILVDDIAKLAAHPLSGDSVLAAPEYCNANFTTYFTPSFWSNPSLSLTFANRKACYFNTGVMVIDLDRWRAGDYTAKIEDWMELQKRMRIYELGSLPPFLLVFSGRITPVDHRWNQHGLGGDNIRGLCRNLHPGPVSLLHWSGKGKPWDRLVANRPCPVDALWAPYDLLQTPFSIDS 344
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 775314 776348 + CmoCh09G001720.1 Cmo09g00172 388174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo09g00172 344 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 59 323 IPR029044 -
Cmo09g00172 344 SUPERFAMILY Nucleotide-diphospho-sugar transferases 58 335 IPR029044 -
Cmo09g00172 344 PANTHER GALACTURONOSYLTRANSFERASE-LIKE 1-RELATED 8 344 - -
Cmo09g00172 344 PANTHER GLYCOSYLTRANSFERASE 8 DOMAIN-CONTAINING PROTEIN 8 344 - -
Cmo09g00172 344 Pfam Glycosyl transferase family 8 59 317 IPR002495 GO:0016757
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo09g00172 Cmo12g00442 CCT
Cmo05g00225 Cmo09g00172 CCT
Cmo05g00225 Cmo09g00172 ECH
Cmo09g00172 Cmo12g00442 ECH
Cmo01g01950 Cmo09g00172 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo09g00172 Cmo-Chr9:775314 Cmo14g00948 Cmo-Chr14:5051809 1.13E-130 dispersed
Cmo01g01950 Cmo-Chr1:13881139 Cmo09g00172 Cmo-Chr9:775314 0 wgd
Cmo12g00442 Cmo-Chr12:2713840 Cmo09g00172 Cmo-Chr9:775314 0 wgd
Cmo05g00225 Cmo-Chr5:964752 Cmo09g00172 Cmo-Chr9:775314 0 wgd
Cmo07g00774 Cmo-Chr7:3499573 Cmo09g00172 Cmo-Chr9:775314 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo09g00172 K20893 - csv:101211531 621.698