Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo09g00174 ATGAAAAGCTCTCGCTTCACCGTCTTAACAAATTCTGCGTACGGAACGAAGAAGCGATCTGGCCGTCTTCTTCATTCAGAACTTGGCCGCCTGTTTGTTTCTTCTTCAAATTCTTTCAATTTCTGCAGTTTATTGACTTCTGATTTTTATATGGAGCATAAGTGCGGCGATGATGAGAAGGCAGACTCTGGTTTATTCGAAACTGAGATTGTTTCTGTGATTATTTCTCAAGCACTTTTGAGCCGTTCCTCGATTGGACACCCCAGAGGTGACGGCGCCGATCAGAGTGCTCTTACACCAAGAAACATATACCTAAATGCTTCTCTGCAAATTAGACGATTCAACAAGATGAAGAAACAATGGGGAGTTTCTCAAGATAATTGGTTAACATTCAGAGGCATTTACTTTTCGAATGTGGCTCATAATAATGACAAGGTCCTTGCGAATGCTAATGGGCAACATGTTAATTTTCTTTACGAACCGAATCGAATACCTAAATTATGTACAGGAACTAATTCAAAGACGCCGGCGCCGGCGCTCCTCCAGCACCAGGGCGGCGCAGCCCACGAAGGGATAAAAACCGTCGTGGTCGATGAAGACGTGTGCAGCGGCGTTTGCATTTACATTGTTACTTGGAACATGAATGGGCAAGCGCGTTATGGGGATTTGGAAAAGCTGGTCGGAGGAAAAGGCGGCAGCCGGGAATTTGAGCTCGTCGTTGTCGGGTTGCAGGAGGTGCCACGGTCGGATGTTTCCCGCCTGTTGCAGTCGGCTTTGGCTGAGTCTCACATGTTGGTAGGAGAAGCAACCATGCAATCTCTGCAACTCTATGTGTTCTGCTCCAAGAACTCTGACTTTTTTATCAAAGAGGTGAAGGTGGATAAACAATCAATTGGAGGGTGTGGCGGATTGCTGAGAAGAAAGAAAGGTGCTGTGGCCATTTTTCTTAATTACAGAGGCATCCGAATGCTCTTCATTTCTTGTCATCTCTCTGCTCACGCTCACAAGGTAGAGGAGAGGAACTGGGAGTGCAAACACATAACGCACTCGTTATTTTCAAAGAAATGGAACCCTTATGCATTGCCCGTTCAAGTCACCGTTTGGTTGGGGGATCTCAACTACAGAATTGAAGGGATCAGCACACACCCAGCTCGAAATTTGATCCGCAAAAATCTTCTTTCACTGCTAAGGAGCAGAGATCAGCTTATGCAAGAAGCTGAAAGAGGACGCATATTCGATGGCTACTGCGAAGGAACATTGTCGTTCAAACCGACCTACAAATACAACGTCGGAAGTAGCAAATACGACAGCAGTTATAAGGTGAGAGTGCCATCGTGGACGGACAGGATCTTGTTCAAACTAGATGAGGAGGAGAAGATTAGTGCAAATTTATGTTCCTATGACTCAATGGATGAGATTTACAGTTCCGACCACAAGCCAGTTAAAGCTCAGCTTTGTCTTCCACTTACAAACACATCCTCGTCTTAG 1488 45.43 MKSSRFTVLTNSAYGTKKRSGRLLHSELGRLFVSSSNSFNFCSLLTSDFYMEHKCGDDEKADSGLFETEIVSVIISQALLSRSSIGHPRGDGADQSALTPRNIYLNASLQIRRFNKMKKQWGVSQDNWLTFRGIYFSNVAHNNDKVLANANGQHVNFLYEPNRIPKLCTGTNSKTPAPALLQHQGGAAHEGIKTVVVDEDVCSGVCIYIVTWNMNGQARYGDLEKLVGGKGGSREFELVVVGLQEVPRSDVSRLLQSALAESHMLVGEATMQSLQLYVFCSKNSDFFIKEVKVDKQSIGGCGGLLRRKKGAVAIFLNYRGIRMLFISCHLSAHAHKVEERNWECKHITHSLFSKKWNPYALPVQVTVWLGDLNYRIEGISTHPARNLIRKNLLSLLRSRDQLMQEAERGRIFDGYCEGTLSFKPTYKYNVGSSKYDSSYKVRVPSWTDRILFKLDEEEKISANLCSYDSMDEIYSSDHKPVKAQLCLPLTNTSSS 495
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 779483 783119 - CmoCh09G001740.1 Cmo09g00174 388176

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo09g00174 495 PANTHER INOSITOL 5-PHOSPHATASE 191 489 - -
Cmo09g00174 495 SMART i5p_5 203 493 IPR000300 GO:0016791|GO:0046856
Cmo09g00174 495 Gene3D Endonuclease/exonuclease/phosphatase 200 495 IPR036691 -
Cmo09g00174 495 PANTHER LD06095P 191 489 - -
Cmo09g00174 495 Pfam Endonuclease/Exonuclease/phosphatase family 210 478 IPR005135 GO:0003824
Cmo09g00174 495 SUPERFAMILY DNase I-like 204 489 IPR036691 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo09g00174 - - - cmax:111473705 564.303
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo09g00174 Cmo-Chr9:779483 Cmo15g00580 Cmo-Chr15:2783779 5.71E-24 dispersed
Cmo09g00174 Cmo-Chr9:779483 Cmo11g00949 Cmo-Chr11:4960255 2.70E-25 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g876 . . . . . . . . . . . Cma09g00178 . . . Cpe06g00127 . . . . . . . . . . . . . . . . Cone7ag1796 . . . . . . . . . . . . . . . . Cmo09g00174 . . . Car09g00159 . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0015462 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 1 0 1 1 0 0 1 1 1 1 0 0 1 1 1 12
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo09g00174 Cmo_Chr09 FPKM 0.0 0.0 0.399767 0.0 1.764431 0.694416 0.836685 2.12767 2.070527 2.163736