Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo09g00176 ATGTTTGGAGAAGACAACAGCATTCCACGATCCAAATTCGGCGGCAACATGGCACATTCCGACCCCAACATTTCGACCACCGTAATCGAAGACGATTTCGCCATGAGAAACAGCAGTGCTTCTGTGGGCGGCCAAGCCTTTTACGACCAGGGTCGTTTGAGTGGTGAAGGCTCTCCAATGACAATGTCGCCCTGGAACCAGACCTCTACGTTCGGTAAATCTTCATGGTCCCAAGTGGAGGAAAACAACGACCCACAAAATGCCTTAATTGGCTCGCTAACCCGTGAGGAGGGCCACATCTATTCCTTGGCCGCTTCAGGGGAGCTTCTCTACACTGGCTCTGACAGCAAGAACATCCGAGTTTGGAAGAATTTGAAGGAATACGCTGCATTTAAGTCCAGCAGTGGGTTGGTGAAAGCCATTATCATCTCGGGTGAGAGGATTTTCACGGGACACCAAGACGGCAAAATCCGCGTCTGGAAGGTGTCCCAGAAGAACTCAAGTGACCACAAACGAGCTGGTACATTGCCAACACTCAAAGACATTTTCAAAAGCTCCATTAACCCCAGCAATTACGTGGAGGGACGAGGGCGTAGAAGGGCTCTGTGGATCAAGCACTCTGATGCAGTGTCTTGTTTGAGCCTCACTGAGGACAAGCTCCTCTTATACTCTGCTTCGTGGGACAGAACACTGAAGGTGTGGAGAATTGCAGATTCCAAGTGCTTGGAATCACTGAATGTGCACGACGATGCGGTGAATTCGGTGGTGGCGAGCGTCGAGGGGCTGGTGTTCACAGGTTCGGCGGACGGGACGGTGAAGGTGTGGAAAAGGGAGGCCAAAGGGAAGGCCACAAAGCACACTCTGGTGGAGTCGTTGCTGAAGCAAGAGTGTGCAGTGACGGCGCTGGCAGTGACGGCGGACGGATCCGTCGTGTACTGTGGGTCTTCTGATGGGATGGTGAATTTCTGGGAGAGGAAAGAGAAGTTGACACACGGTGGTGTTATGAAAGGGCACAAGCTGACTGTGCTGTGCCTGGTAGCGGTGGAGAGCATGGTGTTCAGTGGCTCCGCCGATAAGACCATATGCGTGTGGAGAAGAGAAGGGTCAACCCACACATGTCTGACGGTGCTGACGGGACACACTGGGCCGGTGAAGTGCTTGGCAGTGGAGGAGGACAGTGAGTCCTCGAAGGCTGGGGAGAAGCAGTGGATAGTGTACAGTGGGAGCCTCGACAAGTCCATTAAGGTGTGGCGTGTGCCTGAGATGACGATGGATAGGAATGCGGTGGCGATGATGCAGCAGCAGTTTGGGAGTGACGCGGACTCGGTGCCATCGGATAGAAGCTTCACCTCTTCTAGAGAACCCAGCATAAGCAAACGGTCGTGA 1386 53.39 MFGEDNSIPRSKFGGNMAHSDPNISTTVIEDDFAMRNSSASVGGQAFYDQGRLSGEGSPMTMSPWNQTSTFGKSSWSQVEENNDPQNALIGSLTREEGHIYSLAASGELLYTGSDSKNIRVWKNLKEYAAFKSSSGLVKAIIISGERIFTGHQDGKIRVWKVSQKNSSDHKRAGTLPTLKDIFKSSINPSNYVEGRGRRRALWIKHSDAVSCLSLTEDKLLLYSASWDRTLKVWRIADSKCLESLNVHDDAVNSVVASVEGLVFTGSADGTVKVWKREAKGKATKHTLVESLLKQECAVTALAVTADGSVVYCGSSDGMVNFWERKEKLTHGGVMKGHKLTVLCLVAVESMVFSGSADKTICVWRREGSTHTCLTVLTGHTGPVKCLAVEEDSESSKAGEKQWIVYSGSLDKSIKVWRVPEMTMDRNAVAMMQQQFGSDADSVPSDRSFTSSREPSISKRS 461
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 787047 788432 + CmoCh09G001760.1 Cmo09g00176 388178

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo09g00176 461 MobiDBLite consensus disorder prediction 434 455 - -
Cmo09g00176 461 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 203 236 - -
Cmo09g00176 461 PRINTS G protein beta WD-40 repeat signature 222 236 IPR020472 -
Cmo09g00176 461 PRINTS G protein beta WD-40 repeat signature 263 277 IPR020472 -
Cmo09g00176 461 PRINTS G protein beta WD-40 repeat signature 405 419 IPR020472 -
Cmo09g00176 461 ProSiteProfiles Trp-Asp (WD) repeats profile. 203 244 IPR001680 GO:0005515
Cmo09g00176 461 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 6 448 IPR045182 -
Cmo09g00176 461 SMART WD40_4 86 123 IPR001680 GO:0005515
Cmo09g00176 461 SMART WD40_4 285 324 IPR001680 GO:0005515
Cmo09g00176 461 SMART WD40_4 124 161 IPR001680 GO:0005515
Cmo09g00176 461 SMART WD40_4 370 418 IPR001680 GO:0005515
Cmo09g00176 461 SMART WD40_4 238 276 IPR001680 GO:0005515
Cmo09g00176 461 SMART WD40_4 196 235 IPR001680 GO:0005515
Cmo09g00176 461 SMART WD40_4 328 365 IPR001680 GO:0005515
Cmo09g00176 461 Gene3D - 287 458 IPR015943 GO:0005515
Cmo09g00176 461 Gene3D - 65 193 IPR015943 GO:0005515
Cmo09g00176 461 ProSiteProfiles Trp-Asp (WD) repeats profile. 292 324 IPR001680 GO:0005515
Cmo09g00176 461 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 245 276 - -
Cmo09g00176 461 MobiDBLite consensus disorder prediction 434 461 - -
Cmo09g00176 461 SUPERFAMILY WD40 repeat-like 89 424 IPR036322 GO:0005515
Cmo09g00176 461 MobiDBLite consensus disorder prediction 1 22 - -
Cmo09g00176 461 Pfam WD domain, G-beta repeat 372 417 IPR001680 GO:0005515
Cmo09g00176 461 Pfam WD domain, G-beta repeat 334 364 IPR001680 GO:0005515
Cmo09g00176 461 Pfam WD domain, G-beta repeat 298 323 IPR001680 GO:0005515
Cmo09g00176 461 Pfam WD domain, G-beta repeat 97 123 IPR001680 GO:0005515
Cmo09g00176 461 Pfam WD domain, G-beta repeat 206 234 IPR001680 GO:0005515
Cmo09g00176 461 Pfam WD domain, G-beta repeat 240 276 IPR001680 GO:0005515
Cmo09g00176 461 ProSiteProfiles Trp-Asp (WD) repeats profile. 245 276 IPR001680 GO:0005515
Cmo09g00176 461 Gene3D - 194 286 IPR015943 GO:0005515
Cmo09g00176 461 PANTHER PROTEIN JINGUBANG 6 448 - -
Cmo09g00176 461 CDD WD40 97 418 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo09g00176 - - - csv:101212251 838.95
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo09g00176 Cmo12g00448 CCT
Cmo05g00221 Cmo09g00176 CCT
Cmo05g00221 Cmo09g00176 ECH
Cmo09g00176 Cmo12g00448 ECH
Cmo01g01944 Cmo09g00176 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo09g00176 Cmo-Chr9:787047 Cmo19g00652 Cmo-Chr19:7014601 0 dispersed
Cmo14g01334 Cmo-Chr14:11130644 Cmo09g00176 Cmo-Chr9:787047 1.05E-72 dispersed
Cmo18g00721 Cmo-Chr18:9005162 Cmo09g00176 Cmo-Chr9:787047 4.15E-74 dispersed
Cmo01g01485 Cmo-Chr1:11510877 Cmo09g00176 Cmo-Chr9:787047 1.48E-78 transposed
Cmo01g01944 Cmo-Chr1:13847963 Cmo09g00176 Cmo-Chr9:787047 0 wgd
Cmo12g00448 Cmo-Chr12:2745927 Cmo09g00176 Cmo-Chr9:787047 5.41E-172 wgd
Cmo05g00221 Cmo-Chr5:941792 Cmo09g00176 Cmo-Chr9:787047 3.53E-176 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g860 Blo01g01543 Blo12g00920 Bda01g00554 Bda03g00243 Bpe02g00412 . Bma04g00193 . Cmo05g00221 Cmo12g00448 . Cma09g00180 . . Sed10g2068 . . Bhi04g00295 Tan02g0857 Cmetu01g0434 . Hepe02g0551 . . Cla08g01527 Cam08g2019 Cec08g1593 Cco08g1730 Clacu08g1708 . Cre08g1489 . . . . . Csa03g04173 Chy04g00544 . Blo17g00826 . Bda08g01311 . . . . Bma05g00099 . Cmo01g01944 Cmo09g00176 Cma12g00505 Cma05g00214 . . . . . . . . . . . Cla05g01970 Cam05g2121 Cec05g2132 Cco05g2184 Clacu05g2109 Cmu05g1985 Cre05g2104 . Csa02g02011 Chy03g01498 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012788 3 1 2 2 1 1 0 1 1 1 1 1 1 0 1 2 1 0 0 1 1 1 1 0 0 0 1 1 1 1 28
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo09g00176 Cmo_Chr09 FPKM 1.588857 1.153288 6.129593 5.296235 3.410107 4.090338 2.343093 61.748783 66.779442 57.210461