Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo09g00177 ATGTTCTCAAAAGCCTTCACGTTTAGTAAAGACATTCGGAACTTGGCGTCTGAAATGTTCCCGGGCCAAGTCGAAGCCGCTTTGAAGGAGGCTCCCGGTGCCAAAACCGCGCCGGATAAGGTTATCGTCGCCATCAAGGCTGAGAGAGTGATTTCCAAAACTGCACTGGCTTGGGCTCTTACCCATGTGGTCCGTCCCGGTGACTGTATAACCCTGCTCGCTGTCTTCTCCGTCGAGAAAACTGGCAGAAGGTTCTGGAATTTTCACAGATGGAGTGGGGATTGTGCGAATGCTGTTCAGGAGAATCTGCCGGATCGGGTACATGAGATCTCCGAGTCATGTTCACAGATGGTGCTTCATTTCCACAATCAAGTTGAGGTTAAAGTGAGAGTTAAGGTGGTCACAGGAACACAGGGAGGAGCTGTCGCTGCTGAAGCAAAGTTAAAAGGAGTTAATTGGGTCGTACTAGACAGGAAATTGAAGAATGAGGTAAAAAGTTGCCTGGAAGAACTGAGCTGCAATATTGTTACAATGAAAGGGTCTCAACCGAAAGTTCTCAGGCTTAATTTGGAGTGTTGGAGTGAACCTCAAACTCCTTTCTTTTCAGCTAATTCGTCTCCTGTTCGAAAAGGTCAACAAAATAGGATGAAGCAGACAGCTTCACTAGCAAGCAGACCGGAAGAAGAACCTAGTGCCTCATTCAGAAAATCCTCTAAAGAAGGGTCAAAATTGGGTACTGATGCAGTGTCTTCTATTTTCCTTGTGTATGAGCAAAACCCTCTATATGAAGGGAACTTAAAAGGCAATCACTTGCCAATTAATGAGACTAACGATTTAAGCATTTCAGTATCGTCATCCAACTCAGTGGAAGAAAAAGTTCTGTCTCTACCTCCAACATCTGTGGCTTCAAATCAAAAATGTGTTTATTGGATTTCTCAGAACCATAACCTTTCTGAGGGAAAAACTCTATCCAAGTCCAAAAGAAGATTCCTTAAATTTGCTTCAACTCCCAAGGTGCCATTCAGTAATCCTTCAAGTCTTGAGAAGAGTGCGACTTTTGAAGATATGAGGCTCAACCAGTCTGAGAGAAAGGATTACATTGTGGACTCAAATATCAGGGATGCTGTCTCTTTGGGCAGAGCATCCTCTGCACCCCCTCCTCTGTGCTCATTATGTCAACACAAAGCGCCGGCTTTTGGAAAACCTCCCAGACAGTTCACTCTCAAAGAGCTTGAGGAAGCTACTGACAGATTTTCGGATTTGAACTTCTTGGCAGAAGGCGGTTTTGGAATTGTTCATAGAGGAATCTTGAGAGATGGTCAAGTTGTAGCTGTGAAGCAGTTGAAATGTGGAGGCTTACAAGCAGATGCCGATTTTTGTCGAGAAGTTCGGGTGTTGAGTTGTGCACAACACAGAAATGTAGTGTTGCTGATTGGGTTCTGTATTGAGGACACCATGAGGTTATTGGTTTATGAGTACATATGCAATGGTTCATTGGATTTCCATTTACATGGGAGTAGAAGCCAGTTAGATTGGCATTCAAGGCAAAAGATAGCAATAGGAGCAGCACGGGGTTTACGTTATCTTCACGAAGATTGCAGAGTTGGGTGTATAGTGCATAGAGATATGCGACCTCACAATATCCTCCTAACTCATGATTTTGAACCCATGGTTGCTGATTTCGGGCTGGCAAGGTGGCATTCTAAATGGTCTACCAGTGTTGAGGAGCAAGTTATTGGAACTTCAGGGTATCTAGCACCAGAGTACATCAATGGCGGTATGGTATCACAAAAAGTGGATGTATATGCATTTGGCATGGTTTTATTAGAGTTGATTAGTGGTAAAAGAAGCTGTGAGCTGCACCGTCTAGAGGGAAAACAATTTATATCAGAATGGTTCCACCCCATCTCTGCGTTGCAAATTCAACATTTACTAGCTAGTAGTAACCATTTGGTAGATCCATGCTTAGCATCCGAGCAATCCCCCGACTTCTGTTATCAACTGCATTCTATGGTCCGTGCGGCTTCCTTGTGTCTATGTCCAGATCCTGAATCAAGACCCTCAATGTCAAAGATTCTTCGAGTGCTAGAAGGAGGAGATCCAGTTGTTCCTCTTGGTTTAGACTTCGATCCAGTCGGCTGCAGAAGTGCACACTTGGATGGTTTAACGTCTCACAAACCAATCGAAGCAAGAAGAAGCCATACTCGTACACTCTCACAATGA 2223 44.22 MFSKAFTFSKDIRNLASEMFPGQVEAALKEAPGAKTAPDKVIVAIKAERVISKTALAWALTHVVRPGDCITLLAVFSVEKTGRRFWNFHRWSGDCANAVQENLPDRVHEISESCSQMVLHFHNQVEVKVRVKVVTGTQGGAVAAEAKLKGVNWVVLDRKLKNEVKSCLEELSCNIVTMKGSQPKVLRLNLECWSEPQTPFFSANSSPVRKGQQNRMKQTASLASRPEEEPSASFRKSSKEGSKLGTDAVSSIFLVYEQNPLYEGNLKGNHLPINETNDLSISVSSSNSVEEKVLSLPPTSVASNQKCVYWISQNHNLSEGKTLSKSKRRFLKFASTPKVPFSNPSSLEKSATFEDMRLNQSERKDYIVDSNIRDAVSLGRASSAPPPLCSLCQHKAPAFGKPPRQFTLKELEEATDRFSDLNFLAEGGFGIVHRGILRDGQVVAVKQLKCGGLQADADFCREVRVLSCAQHRNVVLLIGFCIEDTMRLLVYEYICNGSLDFHLHGSRSQLDWHSRQKIAIGAARGLRYLHEDCRVGCIVHRDMRPHNILLTHDFEPMVADFGLARWHSKWSTSVEEQVIGTSGYLAPEYINGGMVSQKVDVYAFGMVLLELISGKRSCELHRLEGKQFISEWFHPISALQIQHLLASSNHLVDPCLASEQSPDFCYQLHSMVRAASLCLCPDPESRPSMSKILRVLEGGDPVVPLGLDFDPVGCRSAHLDGLTSHKPIEARRSHTRTLSQ 740
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 788703 792889 - CmoCh09G001770.1 Cmo09g00177 388179

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo09g00177 740 PANTHER ADENINE NUCLEOTIDE ALPHA HYDROLASE-LIKE DOMAIN KINASE 35 731 - -
Cmo09g00177 740 MobiDBLite consensus disorder prediction 203 226 - -
Cmo09g00177 740 Gene3D Transferase(Phosphotransferase) domain 1 494 701 - -
Cmo09g00177 740 ProSiteProfiles Protein kinase domain profile. 418 703 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo09g00177 740 MobiDBLite consensus disorder prediction 203 242 - -
Cmo09g00177 740 ProSitePatterns Tyrosine protein kinases specific active-site signature. 538 550 IPR008266 GO:0004672|GO:0006468
Cmo09g00177 740 Gene3D Phosphorylase Kinase; domain 1 389 493 - -
Cmo09g00177 740 PANTHER OS01G0253100 PROTEIN 35 731 IPR045271 GO:0004714|GO:0006468
Cmo09g00177 740 SUPERFAMILY Protein kinase-like (PK-like) 399 696 IPR011009 -
Cmo09g00177 740 Pfam Protein kinase domain 421 694 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo09g00177 740 Gene3D HUPs 39 179 IPR014729 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo09g00177 - - - csv:101207605 1404.04
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo09g00177 Cmo-Chr9:788703 Cmo14g01304 Cmo-Chr14:10897387 0 dispersed
Cmo09g00177 Cmo-Chr9:788703 Cmo01g00071 Cmo-Chr1:295611 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g859 . Blo12g00921 . Bda03g00242 . Bpe04g00201 Bma04g00192 . . . . Cma09g00181 . . . Cpe06g00130 . . . . . . . . . . . . . . . Cone4ag1878 Cone7ag1787 . . Lsi04g01631 Csa03g04172 Chy04g00545 . . . . . . Bpe05g00345 . . . . Cmo09g00177 . . . Car09g00161 . . . . . . . . . Cla05g01971 . . . . . . . . . Cme04g00634
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006501 2 5 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 2 1 1 1 1 1 1 1 1 1 1 2 1 36
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74555 PF00069 Pkinase 5.60E-42 CL0016 Cmo PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo09g00177 Cmo_Chr09 FPKM 13.549549 12.897413 1.243977 1.379978 18.364571 16.90148 15.482638 64.666855 66.047012 56.717823