Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo09g00178 ATGGAACTTACTCACATCTTAGCTGCAACCTTCCCCCTTCTCCTATTTCTCTATGCTCTCTTTCGTATAACTTCTCGGAGATCCGCCGCTCATCGCACCAACAACACACTTCCACCGGAAGCCGCCGGTCGTTTGCCAGTGATTGGCCATCTCCATAAACTAAGTGCAACAGAGCCAACTCACATAACCTTGGCCAGAATGGCCGACGCCTACGGACCTATCTTTACCTTAAAATTGGGCGTGAACACAGCCCTTGTCGTGAGCAGTTGGGAAATAGCGCGAGAGTGCTTCACCACAAACGACAGAATTTTCGCTTCCCGCTCAAAAGTTGTTGCCTCAGAGCTGCTCGGCTACAACTACGCAGCCTTGGGAATTAGCCCCTACGGTCCATACTGGCGCCATGTGCGCAAACTAGCCACAGTTGAACTCTTGACGAACCATCGCCTCGAGCAGCTCCAACACATTAGAATATGTGAGGTTCAAAATTCGATCGAGAAACTGTATGAGTTATGTGCGGACAGCAGAAATAAGGGATCAGGTGGGAAAGTGAGGGTTGAGATGAGGAGGTGGTTTGGGGATGTGAGTTTGAATACAATATTTAGGATGGTGGTTGGAAAGCGATTCAGCGCTGTTTTCGAAGGCAATGGTGCGGAGCAGTACAGAGAGGCGTTGAGGGCTTTTTTTAAACTGTTTGCGGCATTTGTTCCTTCAGACTCGTTTTCGTGTCTAAGTTGGTTGGATTTGGGAGGGTATAAGAAGGCCATGAATAAGACGACTAAGGTGCTTGATGAGATGCTTACTAAATGGATCAAAGAGCATCGAGAGAAGAAGAAGAATTGGGGTGAAGGTGGTGTGGAAACAGAGGAGCAAGACTTCATGGATGTCATGCTTTCTGCTGTCGACGACGACGGAGGGTTATGTGGCTTTGATGCGGATACAGTCACCAAAGCTACTTGTTTGTCGATGATGTTGGGTGGATACACTACCATGATTGCTACGACATGGGCTCTTTCCCTACTCCTCAACAATCAAGAAACACTTAACAAGGCACAACTTGAATTAGATGAAAAAGTTGGAAGATCAAGACAAGTAAAAGAGTCCGACATTAAAAATCTGATATATCTCCAAGCCATTGTGAAGGAGACATTACGTTTATATCCTGCAGCGCCGTTTTTAATCCCTCATGAATCTGTAGAAGATTGCACAATTTCAGGCTATCATATCCCTGCAAAGACACGCCTTTTAGTGAATGTTCAAAAACTGCAAAAAGACCCACTTGTTTGGGAGGATCCTTGTGAATTTCGTCCGGAAAGATTCTTAACAAACGACACAAAGTTTGATATGAAAGGACAAAATATGCAACTAATGCCATTTGGAAGGGGTCGGCGGATGTGTCCTGGAATGTCATTTGCCCTTCAACTTGTGCATCTTACTCTTGCAAGCCTACTTCATGAATTTGATATTGGTAGGCCATCTGAAAAATTACTTGACATGGAAGAAGGCTTTGGATTTATTATTTTTAGAAAAGCTCCGCTTGAAATTGTTTTAAGTCCTCGTCTGATCGCCAAAACGTCCAAAAGCCCGCGAGTCAATTTTTTCTACTGTTCTTCGCTGATCGCTACCGCGCACACATCCAAAACTCTTCATCTCTCTCTGTCTCTCTTCTTTCTCTACCGCTTAATCAACGGCGGCGATCAATTTTCCGATCAGCTACTCCGTCCTCTGTTTCGCGCTGGCATCTGCAAACAATACGACGTCGTCTCCTCCATAATTCCGCATCAATGCGTTTCCACTCTTTCACTTGATCGCACTGGTTTTGAAGTTTGCCGCGTGGAGCAACTGCAGCCAATTGTTCCAGCACTTTCTCTCACTCGGTTGAGGATCATCGTCACAACCACCGCATGA 1905 45.67 MELTHILAATFPLLLFLYALFRITSRRSAAHRTNNTLPPEAAGRLPVIGHLHKLSATEPTHITLARMADAYGPIFTLKLGVNTALVVSSWEIARECFTTNDRIFASRSKVVASELLGYNYAALGISPYGPYWRHVRKLATVELLTNHRLEQLQHIRICEVQNSIEKLYELCADSRNKGSGGKVRVEMRRWFGDVSLNTIFRMVVGKRFSAVFEGNGAEQYREALRAFFKLFAAFVPSDSFSCLSWLDLGGYKKAMNKTTKVLDEMLTKWIKEHREKKKNWGEGGVETEEQDFMDVMLSAVDDDGGLCGFDADTVTKATCLSMMLGGYTTMIATTWALSLLLNNQETLNKAQLELDEKVGRSRQVKESDIKNLIYLQAIVKETLRLYPAAPFLIPHESVEDCTISGYHIPAKTRLLVNVQKLQKDPLVWEDPCEFRPERFLTNDTKFDMKGQNMQLMPFGRGRRMCPGMSFALQLVHLTLASLLHEFDIGRPSEKLLDMEEGFGFIIFRKAPLEIVLSPRLIAKTSKSPRVNFFYCSSLIATAHTSKTLHLSLSLFFLYRLINGGDQFSDQLLRPLFRAGICKQYDVVSSIIPHQCVSTLSLDRTGFEVCRVEQLQPIVPALSLTRLRIIVTTTA 634
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 792951 797509 - CmoCh09G001780.1 Cmo09g00178 388180

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo09g00178 634 PRINTS P450 superfamily signature 465 476 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo09g00178 634 PRINTS P450 superfamily signature 456 465 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo09g00178 634 PRINTS P450 superfamily signature 324 341 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo09g00178 634 PRINTS P450 superfamily signature 377 388 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo09g00178 634 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 458 467 IPR017972 GO:0005506|GO:0016705
Cmo09g00178 634 PANTHER CYTOCHROME P450 82C3-RELATED 37 523 - -
Cmo09g00178 634 Pfam Cytochrome P450 43 503 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo09g00178 634 SUPERFAMILY Cytochrome P450 43 519 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo09g00178 634 PRINTS E-class P450 group I signature 92 113 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo09g00178 634 PRINTS E-class P450 group I signature 333 359 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo09g00178 634 PRINTS E-class P450 group I signature 68 87 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo09g00178 634 PRINTS E-class P450 group I signature 194 212 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo09g00178 634 PRINTS E-class P450 group I signature 455 465 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo09g00178 634 PRINTS E-class P450 group I signature 465 488 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo09g00178 634 PRINTS E-class P450 group I signature 417 441 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo09g00178 634 PRINTS E-class P450 group I signature 376 394 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo09g00178 634 PANTHER CYTOCHROME P450 37 523 - -
Cmo09g00178 634 Gene3D Cytochrome P450 23 516 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo09g00178 - - - cmax:111476389 856.284
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo09g00178 Cmo-Chr9:792951 Cmo09g00184 Cmo-Chr9:823300 0 dispersed
Cmo09g00178 Cmo-Chr9:792951 Cmo09g00179 Cmo-Chr9:798867 0 tandem
Cmo01g01938 Cmo-Chr1:13822365 Cmo09g00178 Cmo-Chr9:792951 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g858 . Blo12g00922 . Bda03g00241 . . Bma04g00191 . . . . . . . . . . . . . . . . . . . . . . . . Cone4ag1876 . . . Lsi04g01627 Csa03g04169 Chy04g00548 . . . . . . . . . . . Cmo09g00178 . . . . . . Bhi09g02057 . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000018 15 22 15 12 7 19 2 17 20 14 15 18 14 11 26 20 19 10 1 20 12 9 8 16 8 19 17 19 17 20 442
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo09g00178 Cmo_Chr09 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.401948 0.424106 0.379987 0.403768