Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo09g00179 ATGGAACTTACTCACATCTTACCTGCAACCTTCGCCCTTCTCCTCTTTCTCTATGCTCTCTTTCGTATTGCATCTCGGAGATCCTCCGCCGCCCATCGCTCGAACAAAAGACACCCACCTGAAGCCGCCGGTGCTTTGCCACTGATCGGCCACCTCCATAAACTAAGTGCAACAGAGCCAACTCACATAACCTTGGCCAAAATGGCCGACGCCTACGGACCTATCTTTACCTTAAGATTGGGCATGAACACAGCCCTTGTCGTCAGCAGTTGGGAAATAGCGCGCGAGTGTTTCACCACAAACGACACAATTTTCGCTTCCCGCTCAAAAGTTGTTGCCTCAGAGCTGCTCGGCTACAACTACGCAGCCTTGGGAATTAGCCCCTACGGTCCATACTGGCGCCACGTGCGCAAACTAGCCACGCTTGAACTCTTGACGAACCATCGCCTCGAGCAGCTCCAACACATTAGAATATGTGAGGTTCAAAATTCGATCAAGAAACTGTATGAGTTATGTGCGGACAGCAGAAATAAGGGGTCAGGTGGGAAAGTGAGGGTTGAGATGAGGAGGTGGTTTGGGGATGTAAGTTTGAATACAATATTTAGGATGGTGGTTGGAAAGCGATTCAGCGCTGTTTTCGAAGGCAGTGGTGCGGAGCAGTACAGAGAGGCGTTGAGGGCTTTTTTTGAACTGTTTGCGGCATTTGTTCCTTCAGATTTGTTTCCGTTTCTAAGTTGGTTGGATTTGGGAGGGTATAAGAAGGCCATGAACAAGACCGCCAAGGTGCTTGACCAAATGCTTAGTAAATGGATCGAAGAACATCGAGAGAAGAAGAAGAATTGGGGTGAAGGTGGAGTGGAAACAGAGGAGCAAGACTTCATGGATCTCATGCTTTCTGCTGTCCACGACGACGGAGGGTTATGTGGTATTGGTGGCGATACAGTCACCAAAGCTACTTGTTTGACGATGATATTAGGTGGATTGGACACCACAACAATTACTATGACATGGGCTCTTTCTCTACTCCTCAACGACCAAGAAGCACTCAAGAAGGCCCAACTTGAATTAGATGAAAAGATTGGAAGATCAAGACAAGTGAAAGAGTCTGATGTCAAAAATCTAACATATCTCCAAGCTATTGTGAAGGAGACATTGCGTTTATATCCTGCAGCACCGTTATTAATCCCTCATGAATCCGTAGAAGATTGTATAGTTTCAGGTTATCATATTCCTGCAAGGACACGCCTTTTAGTGAATGTTCAAAAACTGCAAAAAGACCCACTTGTATGGGAGGATCCTTGTGAATTTCGTCCAGAAAGATTCTTAATAAGCCACACAAAATTTGATTTAAGAGGACAAAATCATCAACTAATGCCATTTGGAAGTGGTCGAAGAAAATGTCCTGGAATCTCATTTTCCCTTCAACTTATGCATCTTACCCTCGCAAATCTACTTCATGAATTTGAAATTGGTAGGCCATCTGAAAAATTACTTGACAAGGAAGAAGAGGGTTTTGGGTTGACTGGTGTTAAAAAAACTCCTCTTGAAGTTGTTTTAAGTCCTCGTTTATCGTCTATCGAGTCAAGTTCATGA 1593 44.82 MELTHILPATFALLLFLYALFRIASRRSSAAHRSNKRHPPEAAGALPLIGHLHKLSATEPTHITLAKMADAYGPIFTLRLGMNTALVVSSWEIARECFTTNDTIFASRSKVVASELLGYNYAALGISPYGPYWRHVRKLATLELLTNHRLEQLQHIRICEVQNSIKKLYELCADSRNKGSGGKVRVEMRRWFGDVSLNTIFRMVVGKRFSAVFEGSGAEQYREALRAFFELFAAFVPSDLFPFLSWLDLGGYKKAMNKTAKVLDQMLSKWIEEHREKKKNWGEGGVETEEQDFMDLMLSAVHDDGGLCGIGGDTVTKATCLTMILGGLDTTTITMTWALSLLLNDQEALKKAQLELDEKIGRSRQVKESDVKNLTYLQAIVKETLRLYPAAPLLIPHESVEDCIVSGYHIPARTRLLVNVQKLQKDPLVWEDPCEFRPERFLISHTKFDLRGQNHQLMPFGSGRRKCPGISFSLQLMHLTLANLLHEFEIGRPSEKLLDKEEEGFGLTGVKKTPLEVVLSPRLSSIESSS 530
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 798867 800572 - CmoCh09G001790.1 Cmo09g00179 388181

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo09g00179 530 PANTHER CYTOCHROME P450 82C3-RELATED 36 525 - -
Cmo09g00179 530 PRINTS P450 superfamily signature 326 343 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo09g00179 530 PRINTS P450 superfamily signature 379 390 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo09g00179 530 PRINTS P450 superfamily signature 458 467 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo09g00179 530 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 460 469 IPR017972 GO:0005506|GO:0016705
Cmo09g00179 530 Gene3D Cytochrome P450 31 528 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo09g00179 530 PRINTS E-class P450 group I signature 69 88 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo09g00179 530 PRINTS E-class P450 group I signature 93 114 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo09g00179 530 PRINTS E-class P450 group I signature 195 213 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo09g00179 530 PRINTS E-class P450 group I signature 315 332 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo09g00179 530 PRINTS E-class P450 group I signature 335 361 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo09g00179 530 PRINTS E-class P450 group I signature 378 396 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo09g00179 530 PRINTS E-class P450 group I signature 419 443 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo09g00179 530 PRINTS E-class P450 group I signature 457 467 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo09g00179 530 PRINTS E-class P450 group I signature 467 490 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo09g00179 530 PANTHER CYTOCHROME P450 36 525 - -
Cmo09g00179 530 Pfam Cytochrome P450 44 506 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo09g00179 530 SUPERFAMILY Cytochrome P450 44 522 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo09g00179 - - - cmax:111476389 835.484
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo01g01943 Cmo09g00179 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo09g00179 Cmo-Chr9:798867 Cmo09g00184 Cmo-Chr9:823300 0 dispersed
Cmo10g00947 Cmo-Chr10:4737205 Cmo09g00179 Cmo-Chr9:798867 1.26E-63 dispersed
Cmo09g00178 Cmo-Chr9:792951 Cmo09g00179 Cmo-Chr9:798867 0 tandem
Cmo09g00179 Cmo-Chr9:798867 Cmo09g00180 Cmo-Chr9:801207 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g857 . Blo12g00923 Bda01g00555 Bda03g00240 Bpe02g00413 . . . . . . Cma09g00183 . . . . . . . . . . . . . . . . . . . . . . . Lsi04g01624 Csa03g04166 Chy04g00549 . . . . . . . . . . Cmo01g01943 Cmo09g00179 . . . Car09g00162 . . Bhi09g02056 . . . . . . . . . . . . . . . . Cme04g00637
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000018 15 22 15 12 7 19 2 17 20 14 15 18 14 11 26 20 19 10 1 20 12 9 8 16 8 19 17 19 17 20 442
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo09g00179 Cmo_Chr09 FPKM 4.563492 5.140995 8.582515 8.728585 28.156782 22.832951 25.301893 11.658093 10.912391 14.772992