Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo09g00186 ATGGAATTATCTTGCTTCTCCTCATCGGACGTCTTTGCTGGAATCCTCGCCCTCATCATCTTTCTTTATTCTCTCTCCAAGATATATGGAGGAACATTCGGTGCTCATCGGATGCGACTGCCACCTGAAGCCGGCGGAGCCTTGCCGCTGATCGGCCACCTCCATCGTCTAGCTGGAAATGAACCAGCACACATATCATTTGCCAAAATGGCCGATGCCTACGGCCCAATTTTCACCGTTAGATTGGGTGTGTACACAAACTTGATCGTCAGCAATTGGGAAATAGCGAGAGAGTGTTTTAGTACAAAGGATAGAATCTTCGCCTCTCGTCCAAAGCTTGTGGCCTCAAAGCTGTTGGGGTATGACTATGCCATGATGGGGTTGAGCCCTTATGGTCCGCACTGGCGCCATGTCCGCAAACTAGCCACGCTCGAGCTCTTAACGAACCAACGCCTGGAGCAGCTCCAACACATTCGAGTATTCGAGGTTCGGAGTTCGATTAAGAAACTATATGAGGTGTGTGTGAAGGGTAGAAATAATGGATCAAATGAGGGAGTGTTGGTGGAGATGAAGACGTGGTTTGGTGATATAACTCTCAACACAATATTCAGGATAGTGGTTGGCAAGCGATTCTCCACGGCGGTGGAAGGAAGTGGCAATGAAGAATATCGGACGGCGTTGAGGGATTTCTTTGAATGGTTTGGAGTATTTGTTCCCTCGGATTCGTTTCCATTTCTAAAATGGTTGGACTTGGGAGGACATGAGAAGGCCATGAAGAACACGGCCAAGGTGCTTGACGAGGTGTTTGACAAATGGCTTCAAGAGCATCGACAAAAGAAGAAGAATCTCGGTGAAGGGAAGATGGAGGACCCTCCTGACTTCATGGATGTGATGCTTTCTAATGTTAAAGATGATGGACAACTCTCTAACTATGATGCTCATACTGTCACCAAGGCTACATGTTTGGCTCTTATATTGGCCGGGTCCGACACTACAACAATAACGATGGTATGGGCTCTTTCTTTACTTCTTAATCATCCCGAAGTCATTGAGAGAGCTCAACTTGAATTAGACGAACAGGTTGGGAGACAAAGGCAAGTGAGAGAGTTTGATGTAAAAAATTTGTTGTATCTTCAAGCTATTGTGAAGGAAACATTGCGTTTATATCCTGCAGCACCGATCCTAATCCCTCATGAATCCATAGAAGATTGTACGGTTGCTGGTTACCATATCCCAGCAGGAACACGTCTTATTGTGAATGTTCAAAAGCTTCAAAGAGACCCACAAATATGGAAAGATCCGTGTGAATTTCGACCGGAGAGATTTCTAACTGATAATAAAGATTTTGATGTTAGAGGACAGAGTCCCCAGTTAATACCATTTGGAAGTGGTAGAAGAATGTGTCCTGGAATCTCGTTCGCCCTCCAAGTTTTGCATCTAACGCTTGCAAATTTGCTTCATGGGTTCGAAATAAGAAGGCCATCTAAACAGCTACTCGACATGGAGGAGAGTGCTGGAATGACGAGCATTAGAAAGAATCTACTTGAGACTGTAATAACTCCTCGCCTTCCCGCTCAAGTTTATGAATGA 1590 45.22 MELSCFSSSDVFAGILALIIFLYSLSKIYGGTFGAHRMRLPPEAGGALPLIGHLHRLAGNEPAHISFAKMADAYGPIFTVRLGVYTNLIVSNWEIARECFSTKDRIFASRPKLVASKLLGYDYAMMGLSPYGPHWRHVRKLATLELLTNQRLEQLQHIRVFEVRSSIKKLYEVCVKGRNNGSNEGVLVEMKTWFGDITLNTIFRIVVGKRFSTAVEGSGNEEYRTALRDFFEWFGVFVPSDSFPFLKWLDLGGHEKAMKNTAKVLDEVFDKWLQEHRQKKKNLGEGKMEDPPDFMDVMLSNVKDDGQLSNYDAHTVTKATCLALILAGSDTTTITMVWALSLLLNHPEVIERAQLELDEQVGRQRQVREFDVKNLLYLQAIVKETLRLYPAAPILIPHESIEDCTVAGYHIPAGTRLIVNVQKLQRDPQIWKDPCEFRPERFLTDNKDFDVRGQSPQLIPFGSGRRMCPGISFALQVLHLTLANLLHGFEIRRPSKQLLDMEESAGMTSIRKNLLETVITPRLPAQVYE 529
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 830375 832040 - CmoCh09G001860.1 Cmo09g00186 388188

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo09g00186 529 Gene3D Cytochrome P450 34 520 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo09g00186 529 SUPERFAMILY Cytochrome P450 47 522 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo09g00186 529 PRINTS P450 superfamily signature 327 344 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo09g00186 529 PRINTS P450 superfamily signature 380 391 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo09g00186 529 PRINTS P450 superfamily signature 459 468 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo09g00186 529 PRINTS P450 superfamily signature 468 479 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo09g00186 529 Pfam Cytochrome P450 45 507 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo09g00186 529 PRINTS E-class P450 group I signature 71 90 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo09g00186 529 PRINTS E-class P450 group I signature 95 116 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo09g00186 529 PRINTS E-class P450 group I signature 197 215 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo09g00186 529 PRINTS E-class P450 group I signature 316 333 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo09g00186 529 PRINTS E-class P450 group I signature 336 362 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo09g00186 529 PRINTS E-class P450 group I signature 379 397 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo09g00186 529 PRINTS E-class P450 group I signature 420 444 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo09g00186 529 PRINTS E-class P450 group I signature 458 468 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo09g00186 529 PRINTS E-class P450 group I signature 468 491 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo09g00186 529 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 461 470 IPR017972 GO:0005506|GO:0016705
Cmo09g00186 529 PANTHER CYTOCHROME P450 82C3-RELATED 39 529 - -
Cmo09g00186 529 PANTHER CYTOCHROME P450 39 529 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo09g00186 - - - csv:101208335 876.315
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g01941 Cmo-Chr1:13838099 Cmo09g00186 Cmo-Chr9:830375 0 dispersed
Cmo01g01942 Cmo-Chr1:13841183 Cmo09g00186 Cmo-Chr9:830375 0 dispersed
Cmo09g00183 Cmo-Chr9:816745 Cmo09g00186 Cmo-Chr9:830375 0 dispersed
Cmo09g00184 Cmo-Chr9:823300 Cmo09g00186 Cmo-Chr9:830375 0 dispersed
Cmo09g00185 Cmo-Chr9:827782 Cmo09g00186 Cmo-Chr9:830375 0 tandem
Cmo09g00186 Cmo-Chr9:830375 Cmo09g00187 Cmo-Chr9:833698 6.01E-117 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g845 . Blo12g00930 . . . . . . . . Cma01g01880 Cma09g00191 . . . . . . . . . . . . . . . . . . . . . . . . Csa03g04158 Chy04g00559 . . . . . . . . . . . Cmo09g00186 . . . . . . Bhi09g02031 . . . . . . Cla05g01987 . . . . . . . . . Cme04g00668
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000018 15 22 15 12 7 19 2 17 20 14 15 18 14 11 26 20 19 10 1 20 12 9 8 16 8 19 17 19 17 20 442
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo09g00186 Cmo_Chr09 FPKM 1.283716 1.214704 0.562414 0.360482 1.082874 0.519371 0.671779 0.0 0.0 0.0