Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo09g00188 ATGGACTTCCAATTACCATCCTCCATCACCGTGCTTCTTCTTTTGTTTTTCATTACTTCCTGTTATTATCTGTGGCGAAAGTGGCAGCAGCACAAAGTGGCAGAGCGCAAGCAGGCGCCTTCACCGCCGGGAGCCTGGCCCATCATCGGCCACCTCCATCTTCTCCACAATGCAAAGCTCCCCCATCATGCTCTTGGAGCCATGGCCGACAAATATGGGCCCATCTTCCGTCTCCAGCTCGGCTCCCGCTCGGCTCTAGTGGTCAGCAGCTGGGAAATGGCCAAGGAAAGCATGTGCTTTAACGACGCCGCCGCCGCCTCCCGCCCTGGTGTCTCTGGCACAAAATATTTCTCTTACGACTTTGCTGCCTTCGGCTTGGCTCCTTACAGTCCTTACTGGCGCGAGATTCGTAAAGTCACTCACATAGAGCTCCTCTCTAATCCGCGCGTTCACCAGGTTAAGAGCACTATGCTCGCTCAGATCAACACATCGCTGACAGAGCTGCACGAAACATGGGGTGCCCAGAAGGATGAATCGGGGCAGGTTGCTGTAGAAATGAAGCGTTGGTTTGGGGATGTGATAGTGAATATGCTTCTGAAGATCATCATCGGGAAACGATGTGTGGGTCCGAACGCCGAGGGCGGTGAAAAGGAAGCCAAAGATATCCAATTGGCAATTAGGGACTCCTTCCATTTGATGGGTCAAGGGTTGTTGCAAGACTATATTCCACTGATCGGACGGCTGGGATTTAATGGGCAGGTGCCAGTGATGAAGAATATAGCGAAACGATTCGACATGGTTCTAAGTGAATGGCTGGAAGAACACAAGCGTAGAAGATCAGCTTCTTCCGGTGAAAATGACAGAGATTTTATGGACGCTCTCATTTCTTTATATAATGGCAAGGAGATTGAAGGTTACTACGACGGTGATACCATTACCAAGGCCACAACCCTCGTGGGTGGAACTGAAAGCACGACGGTGACTCTAACATGGGCCATGTCGTTGCTACTAAACAATCCACATGTTCTGGAAAAGGCGTGGCAGGAGCTGGACGCGGTGGTCGGGAGAGAGAGGAGGGTGACAGAGGACGACGTAGGCAAGCTTGTTTATTTACAAGCCATAATTAAGGAGACGATGCGATTGTACCCTGCAGGGCCTCTGTTGGGGCCTCGTGAGTTCCACAAGGACTGCGTTGTGGGAGGCTACTTTGTTCCCAAAGGCACCCAGTTGATCCCAAACATTTGGAAGATCCAAACCGACCCACGGGTTTGGTGTGAGCCGTTTGAGTTCAAGCCGGAGCGGTTTTTGACGACCCATAAGGATGTGGATTTGAAGGGGAATCATTTTGAGTTGATTCCGTTTGGGAGTGGGCGGAGAGGGTGCCCGGGAGTGGCGTTTGGGCTTCAAATGATGCATTTCACTTTGGCTGGGTTTTTACAGTGCTTTGATGTCAAAAACCCCACTAAGGACCCAATTGATATGTCGGAGAATTTCGGAATGGCCAATGAGAAGTGGGTGAAGAGGGGAGTTTGTGAGGCAAAGAAGGCCCCTTCGCCGCCGGGTGCTTGGCCCATAATTGGCCACCTCCATCTGCTCAACAATGGGAAGCTCCCCCACCGTGTTCTTGGAGCCATGGCCGACAAATATGGCCCGATCTTTCACCTGCAGCTCGGCTCTCGCCCTGCTCTGGTCGTCAGCAATTGGGAAATGGCCAAAGAAAGCATGTGCATTAACGACGGCGCCGCTGCATCTCGCCCTGAACTCTCGGCTAAGAGCATGATGCTTAGTGAGATGGCCACATCAGTTACAGAGTTGCACACAAGATGGGCTTCGGAGAAGAACCAATTGGGACACATTAAGGTGGAGATGAAGCGTTGGTTTGGCGATGTGACATTGAATATGCTTCTTAAGGTCATCATAGGTAAAAGATGCGTAGGTCCAAACGCCAAGGGAGATGAAAAAGAAGCAATAGACTTGCAAATGGCAATTAGGAAGTCTTTTCATTTGATGGGTGAAGGGATGCTGAGAGACTACATTCCTATTCTTGCAAATCTGGGATTTGATAGACATGTTAAGGCAATGGAGAAAATAGCCATACGAATCGACTCCATTCTTCAGGGTGGAACTGAAAGCAGCTCTGTGACTCTAACATGGGCGCTGTCATTACTGGTAAACAACCCGGGAGCGCTGGAGAAGGCTTATGAAGAGCTTGACCAAGTGGTGGGAAGAGACAGGCGAGTGAATGAGAGCGACATAACCAAGTTGGTTTATTTACAAGCCGTAGTGAAAGAGACAATGCGACTGTACCCAGCAGGGCCTCTCTTGGGTCCTCGTGAGTTCTACAAGGACTGCTTTGTGGCCGGCTATTTTGTTCCCAAAGGCACCCAATTGATCCCGAACATTTGGAAGATCCAAACCGACCCACGCGTGTGGCCAGACCCCTTTGAGTTCAAGCCGGAGAGGTTTTTGACGACCCATTGCGACGTGGATTTGAAAGGGAATAATTTCGAGTTGATTCCGTTTGGGAGTGGGCGAAGAGGGTGCCCCGCAGTTGCGTTTGGGCTTCAGATGGTGCATTTCGCCTTGGCTGGCCTTTTGCATTCCTTTACCGTCAAAACCCCGACGCCCCAACCAGTTGATATGGCGGAGCATTTCGGTATGGCCAATGAGAAAGTGGTTCCTCTTAATGTTTTGGTCACCCCGCGTTTACCTTCGCATCTTCACGGCCCAATAATGTAG 2739 50.71 MDFQLPSSITVLLLLFFITSCYYLWRKWQQHKVAERKQAPSPPGAWPIIGHLHLLHNAKLPHHALGAMADKYGPIFRLQLGSRSALVVSSWEMAKESMCFNDAAAASRPGVSGTKYFSYDFAAFGLAPYSPYWREIRKVTHIELLSNPRVHQVKSTMLAQINTSLTELHETWGAQKDESGQVAVEMKRWFGDVIVNMLLKIIIGKRCVGPNAEGGEKEAKDIQLAIRDSFHLMGQGLLQDYIPLIGRLGFNGQVPVMKNIAKRFDMVLSEWLEEHKRRRSASSGENDRDFMDALISLYNGKEIEGYYDGDTITKATTLVGGTESTTVTLTWAMSLLLNNPHVLEKAWQELDAVVGRERRVTEDDVGKLVYLQAIIKETMRLYPAGPLLGPREFHKDCVVGGYFVPKGTQLIPNIWKIQTDPRVWCEPFEFKPERFLTTHKDVDLKGNHFELIPFGSGRRGCPGVAFGLQMMHFTLAGFLQCFDVKNPTKDPIDMSENFGMANEKWVKRGVCEAKKAPSPPGAWPIIGHLHLLNNGKLPHRVLGAMADKYGPIFHLQLGSRPALVVSNWEMAKESMCINDGAAASRPELSAKSMMLSEMATSVTELHTRWASEKNQLGHIKVEMKRWFGDVTLNMLLKVIIGKRCVGPNAKGDEKEAIDLQMAIRKSFHLMGEGMLRDYIPILANLGFDRHVKAMEKIAIRIDSILQGGTESSSVTLTWALSLLVNNPGALEKAYEELDQVVGRDRRVNESDITKLVYLQAVVKETMRLYPAGPLLGPREFYKDCFVAGYFVPKGTQLIPNIWKIQTDPRVWPDPFEFKPERFLTTHCDVDLKGNNFELIPFGSGRRGCPAVAFGLQMVHFALAGLLHSFTVKTPTPQPVDMAEHFGMANEKVVPLNVLVTPRLPSHLHGPIM 912
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 839943 845317 - CmoCh09G001880.1 Cmo09g00188 388190

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo09g00188 912 PANTHER CYTOCHROME P450 82A2 591 706 - -
Cmo09g00188 912 PRINTS P450 superfamily signature 452 461 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo09g00188 912 PRINTS P450 superfamily signature 320 337 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo09g00188 912 PRINTS P450 superfamily signature 373 384 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo09g00188 912 PANTHER CYTOCHROME P450 82A2 512 594 - -
Cmo09g00188 912 PANTHER CYTOCHROME P450 82A2 9 504 - -
Cmo09g00188 912 PANTHER CYTOCHROME P450 82A2 703 906 - -
Cmo09g00188 912 Gene3D Cytochrome P450 699 901 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo09g00188 912 Gene3D Cytochrome P450 29 508 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo09g00188 912 PANTHER CYTOCHROME P450 82C3-RELATED 703 906 - -
Cmo09g00188 912 Gene3D Cytochrome P450 509 698 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo09g00188 912 PANTHER CYTOCHROME P450 82C3-RELATED 591 706 - -
Cmo09g00188 912 PANTHER CYTOCHROME P450 82C3-RELATED 512 594 - -
Cmo09g00188 912 PANTHER CYTOCHROME P450 82C3-RELATED 9 504 - -
Cmo09g00188 912 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 841 850 IPR017972 GO:0005506|GO:0016705
Cmo09g00188 912 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 454 463 IPR017972 GO:0005506|GO:0016705
Cmo09g00188 912 PRINTS E-class P450 group I signature 329 355 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo09g00188 912 PRINTS E-class P450 group I signature 193 211 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo09g00188 912 PRINTS E-class P450 group I signature 413 437 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo09g00188 912 PRINTS E-class P450 group I signature 372 390 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo09g00188 912 PRINTS E-class P450 group I signature 451 461 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo09g00188 912 PRINTS E-class P450 group I signature 69 88 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo09g00188 912 PRINTS E-class P450 group I signature 461 484 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo09g00188 912 SUPERFAMILY Cytochrome P450 517 902 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo09g00188 912 SUPERFAMILY Cytochrome P450 40 500 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo09g00188 912 Pfam Cytochrome P450 40 499 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo09g00188 912 Pfam Cytochrome P450 517 586 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo09g00188 912 Pfam Cytochrome P450 694 886 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo09g00188 - - - csv:101213457 880.167
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo01g01938 Cmo09g00188 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo09g00188 Cmo-Chr9:839943 Cmo01g01943 Cmo-Chr1:13844429 1.50E-101 dispersed
Cmo09g00187 Cmo-Chr9:833698 Cmo09g00188 Cmo-Chr9:839943 0 tandem
Cmo09g00188 Cmo-Chr9:839943 Cmo09g00189 Cmo-Chr9:847331 6.89E-93 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g843 . . . Bda03g00233 . Bpe04g00198 Bma04g00186 . . . . Cma09g00192 . . . . . . . . . . . . . . . . . . . . . . . Lsi04g01609 Csa03g04156 Chy04g00560 . . . . . . . . . . Cmo01g01938 Cmo09g00188 . . . . . . Bhi09g02030 . . . . . . Cla05g01988 . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000018 15 22 15 12 7 19 2 17 20 14 15 18 14 11 26 20 19 10 1 20 12 9 8 16 8 19 17 19 17 20 442
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo09g00188 Cmo_Chr09 FPKM 10.313811 10.856129 0.117689 0.0 5.03845 6.06926 5.733258 0.087741 0.0 0.083547