Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo09g00189 ATGGAACTTCCCGGAATATCCATCGGAATCATTCCCCCATATCTCAACACCTTTGTAGCTGCTCTCTTCCTCTTCCTTCTCTCCTCATTCTTTGTTTTCAAGAAGGCTACAGCCCCTAAACGCAGAGAACCCCCTGAAGTAGCCGGTGGATGGCCGATAATCGGCCATCTCCCACTTCTCAAAGCCGATTCCCAACTCCCTCATCAAACCTTGGGAGCCCTGGCTGACAAATATGGACCTATATTCCGCATTCGAGTGGGTGCCCAACCAACTCTCATTATTAGCAGTTCGGAATTAGCCAGAGAGTGCCACTCCACCCTTGATTCAATCGTCTGCTCCCGCCCCAAAAGTGTGGGAGGAAAGTTGTTGGGCTACAACTACGCGGCTTTTGGGGCCAGGCCGTACGATTCCTTTTATCGCAGTATGCGTAAAATCGTTGTCTCCGAGGTGCTTTCGAATCGTTGTCTGGGCTTACGGAGGGATATTAGAGTGTCAGAGGTGAAGAAATCGTTGAAGGAGCTTTACAATCAGTGGACAAAGAGAGAGGAAGGCTCGGATCACATACTTGTTGATATTGAACAATGGATTGGGAATGTTAACCTGAGAGTGGTTCTGATGATGGTTTGTGGGAAGCGGTTCCTTGGCGATTCTGCTGACGATGAGGAGATGAAACGGTGTCGTAAAGTCATGAGAGAGTTCTTGGATTTGATGGGGAAATTTCTGGTGGGAGATAGCATTCCTTTTCTGAGATGGCTGGATTTGGGTGGATATGAAAAGGCCATGAAGATAACTTCAAAGCAATTGGACTCTCTTTTGGAGGAATGGCTTGAAGAACACCGTCGGAAGCGAACCGATCATAATGACTTGATGGATGTGATGCTTTCTAATCTTGAAGGGATGGATCTTGCAGGCTACGACGCCGACACAGTCAACAAAGCCACTTGTTTGAGCATTATCACTGGGGGAACCGATACTGTAACGGTGACCTTGTCATGGGCCATCTCGTTGTTGCTGAACAATAGAGAGGCGTTGAGAAAGACCCAAGAAGAGCTGGACATCCATGTCGGAAAGGACCGGCAAGTAGATGAATCGGACATAAGCAAGCTGGTGTATCTCCAAGCCGTGGTGAATGAGACATTAAGGTTGTACCCACCGGGACCGCTGTCGGGTGTTCGAGTGTTCAGTGAGGACTGCACGGTGGGAGGCTACGACGTAGTGGCCGGCACGCACCTCATTACAAATCTTTGGAAGATACAGACGAACCCTCAGGTGTGGGCAGAGCCTTTGGAGTTCAAGCCTGAGAGGTTTGTTAGCGGAGAGAAGCAGTTGGATGTGAAGGGGCAGAACTTCGAATTTGCCCCGTTTGGCTTAGGAAGAAGAGCCTGCCCTGGAATGAGCCTTGGGATTCAGATGACGCAGTTGGTGTTGGCGAGCCTGATTCATTCGCTGGAACTTGGAACTGGGTCCGATGAACCGGTAGACATGGCTGCTGGGTTTGGACTCACAATTAGCACGGAGCTTCCCACTACGACATCCATGGCAGATCAGATTTCCCCATATCTCAACAGCACTGTAGCTGGACTACTCTTCCTCTTGCTTCTCTTCTCATATTTTGTTCTCAAGAAGGCTACATCCCGTAAGCGCCGATCACAACCTCCTGAAGTAGCCGGCGGATGGCCCATAATCGGCCATCTACGACTCCTCAGTACTGATTCGCAGCTCCTCCATGAAACGTTGGGAGGACTGGCCGACAAATATGGCCCAATATTTGGCATCCGAATCGGTGTCCGTCCAGCCCTCGTTATTAGCAGTTGGGAAGTAGCTACCGAGTGCTACACCACCCTCGATTCAATCGTGTCTTCGCGACCCAAAATTATATTACAAAAGAAACTGGGATACAACTTTGCCGGTTTTGGGTTCAGGCACCACTGCGATTCCTTTTACCGGAACATGCGTAAGATCGTAGCCTCCGAGGCGCTTTCCAACCGCCGTCTGGAGTTACAGAGAGATATTAGAGTTTCTGAGGTGAAAAGATCGGTGAAGGAGGTTTACAGTTTATGGGCGAAAACAGGGGAAGCCTCATCGGACTCCTATTTAGTTCTTGATTTGGACGAGTGGATTGGGAATATTGCTTTGAATGTGATTCTGATGATGGTTTGTGGAAAGCGGTTCGTCGGCGGTTCTTGCGGCGACGAGAGGGAGATGGAACGATGTCGTAAAGCGATGAGGGGTTTTTTTGACTTGGGGGGGAAGTTTATAGTGGGAGATGCGATTCCTTTTTTGAAATGGCTGGATTTGGGTGGATATCAAAAGGCGACGAACAAAGTATGGAAGGAATTGGACTGTCTTATGGAGGAATGGCTGGAAGAACATCGCCGGAAGAAGAGGGACTGCAGCGACGCCGACGGGGAGCACGACCTCATGGCTGTGATGCCGTCTCTTCTTGAAGGCTTGGACCTTGCTGGATATGATGCTGATACTGTCAACAAAGCTACTTGCTTGACGCTTATTTCTGGGGGAACTGATACGATGGCGGTAACTCTAACATGGGCGATCTCGTTATTACTGAACAACCAAGAGGCATTGAGAAAAGTAGAGGAGGAGCTAGACATCCACGTTGGGAAGGAAAGGGCAGTGGATGAATCAGACATAAGCAAGCTGGTGTATCTCCAAGCCGTAATCAAAGAGACATTAAGGTTGTACCCAGCAGGCCCACTGTCGGGGGCGCGAGAGGTAAGCCAGGACTGCACAATTGGAGGTTACAACGTCGCGGCAGGCACGTACCTCATCACAAACATTTGGAAGATACAGAGGGACCCTCGAATTTGGCAAGAGCCTTCGGAGTTCAAGCCTGAGAGGTTTCTAAGCAGCCACAAGCACATGGATGTGAAGGGGCAGCACTTTGAACTGTCTCCCTTTGGGTATGGAAGAAGGGCCTGTCCTGGGCAGGGGATTAGCCTTCTAATGACGCCCTTGGTGCTAGCCAGTTTGGTTCATTCATTCCAACTTAGAACTCGTCGTGATGAAGCGGTGGACATGACTGCCAACCTTGGGCTCACCATGCACAGAGTCAACCCTCTTCAAAAGCTGGGCAGGCCTTGCAAAGGCAGACACCCTCCTGAGGCAGACGGCGGATGGCCGATTATAGGCCACCTGCGGCTGCTGGTAGGTCCAAAGCTCCCCTACGAAACACTGGGAGACATGGCCGACAAATACGGACCAATATTCACCATTCGAGTTGGTGTCCGGAAAGGCCTGGTTATAAGCAATTGGGAAGTGGCAAAAGAGTGCTACACAACTCTTGATTCAGTCGTTTCTTCGCGTCCCAAAAGTGTGGTAGGCGAATTGTTGAGCTATAACTTTGCCGGTTTTGGGTTCAGGCCATATTATGATTCCTTTTACCGCAGCGTGCGCAAAATCATAATCTCCAAACTGCTGTCGAACCGCCGTTTGGCGTTGAACAGAGACGTTAGAGTTTCTGAGGTGAAGAGAGCGGTGAAGGAGCTTTACGATTTGTGGATCACAAATAGAGATTTGGTTGTTGATATGGATGAGTGGATTGGGAATATTAATTTGAATGTGAGTTTGATGATGGTTTGCGGGAAGAGATTCATTGGCGATGATGCGGTTGTGAGACGGTGCCGCAAAGCCATGAGGGAATTCTTTGATTTGGGTGGTCAGTTTATGGTGGGAGATGCCATTCCCTTTCTTAGATGGCTGGATTTGGGCGGCTATGAGAAGGCCATGAAGACAACTTCAAGGGAATTGGACTGTCTTATTACGGACTGGCTGGAAGAACACCGCCGAAGGAGACACTCCTCCACCGCCGCAGCCGCCGATAGTGAACATGACTTCATGGATGTGATGCTTTCGAGTCTTGAAGAAGGAACGATGGACCTTGCTGGGTATGATGCTGATACAGTCATCAAAGCCACTTGCATGACCCTTATAGCCGGGGGAACTGACACCATGACAGTCACTGTGACATGGGCGATCTCATCGTTATTGAACAACCGAGAGATACTAAGAAAGGCACAAGAGGAGCTAGACATGCATGTCGGAAAGGAAAGGGTAGTGGATGAATCAGACATAAGCAAGCTGGTGTATCTCCAAGCCATTGTGAAAGAGACATTTAGGTTGTACCCACCAGGCCCACTGGGGGGTGTGCGAGAGTTCAGCCAGGACTGCACGGTGGGAGGCTATAACGTGGCCGCCGGCACACGCCTCATCACTAACCTTTGGAAGATACAGACGGACCCTCGAGTTTGGGCAGAGCCTTTGGAATTCAAGCCCGAGAGGTTTCTGGGTAGGCACAAGCAGTTGGATGTGAGTGGCAAGAATTTTGAACTGGGCCCGTTTGGGTATGGAAGAAGGGCTTGTCCTGGGCTGGGCATTGGAGTTCAAATGACGCAGCTGCTGCTGGCAACTCTGATTCATTCATTTGAAATTGGAACTCGTTTTGATGAACCGGTTGACATGGCTGCTGTTAACTCTGGACTCACCGCCCGTAGAGTCAGCTCTCTTAAACTTCTAGTCAAGCCTCGCCTCCCACCCAGTGCTTATGCGGTTGATTCTGCCTAA 4581 49.9 MELPGISIGIIPPYLNTFVAALFLFLLSSFFVFKKATAPKRREPPEVAGGWPIIGHLPLLKADSQLPHQTLGALADKYGPIFRIRVGAQPTLIISSSELARECHSTLDSIVCSRPKSVGGKLLGYNYAAFGARPYDSFYRSMRKIVVSEVLSNRCLGLRRDIRVSEVKKSLKELYNQWTKREEGSDHILVDIEQWIGNVNLRVVLMMVCGKRFLGDSADDEEMKRCRKVMREFLDLMGKFLVGDSIPFLRWLDLGGYEKAMKITSKQLDSLLEEWLEEHRRKRTDHNDLMDVMLSNLEGMDLAGYDADTVNKATCLSIITGGTDTVTVTLSWAISLLLNNREALRKTQEELDIHVGKDRQVDESDISKLVYLQAVVNETLRLYPPGPLSGVRVFSEDCTVGGYDVVAGTHLITNLWKIQTNPQVWAEPLEFKPERFVSGEKQLDVKGQNFEFAPFGLGRRACPGMSLGIQMTQLVLASLIHSLELGTGSDEPVDMAAGFGLTISTELPTTTSMADQISPYLNSTVAGLLFLLLLFSYFVLKKATSRKRRSQPPEVAGGWPIIGHLRLLSTDSQLLHETLGGLADKYGPIFGIRIGVRPALVISSWEVATECYTTLDSIVSSRPKIILQKKLGYNFAGFGFRHHCDSFYRNMRKIVASEALSNRRLELQRDIRVSEVKRSVKEVYSLWAKTGEASSDSYLVLDLDEWIGNIALNVILMMVCGKRFVGGSCGDEREMERCRKAMRGFFDLGGKFIVGDAIPFLKWLDLGGYQKATNKVWKELDCLMEEWLEEHRRKKRDCSDADGEHDLMAVMPSLLEGLDLAGYDADTVNKATCLTLISGGTDTMAVTLTWAISLLLNNQEALRKVEEELDIHVGKERAVDESDISKLVYLQAVIKETLRLYPAGPLSGAREVSQDCTIGGYNVAAGTYLITNIWKIQRDPRIWQEPSEFKPERFLSSHKHMDVKGQHFELSPFGYGRRACPGQGISLLMTPLVLASLVHSFQLRTRRDEAVDMTANLGLTMHRVNPLQKLGRPCKGRHPPEADGGWPIIGHLRLLVGPKLPYETLGDMADKYGPIFTIRVGVRKGLVISNWEVAKECYTTLDSVVSSRPKSVVGELLSYNFAGFGFRPYYDSFYRSVRKIIISKLLSNRRLALNRDVRVSEVKRAVKELYDLWITNRDLVVDMDEWIGNINLNVSLMMVCGKRFIGDDAVVRRCRKAMREFFDLGGQFMVGDAIPFLRWLDLGGYEKAMKTTSRELDCLITDWLEEHRRRRHSSTAAAADSEHDFMDVMLSSLEEGTMDLAGYDADTVIKATCMTLIAGGTDTMTVTVTWAISSLLNNREILRKAQEELDMHVGKERVVDESDISKLVYLQAIVKETFRLYPPGPLGGVREFSQDCTVGGYNVAAGTRLITNLWKIQTDPRVWAEPLEFKPERFLGRHKQLDVSGKNFELGPFGYGRRACPGLGIGVQMTQLLLATLIHSFEIGTRFDEPVDMAAVNSGLTARRVSSLKLLVKPRLPPSAYAVDSA 1526
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 847331 853825 - CmoCh09G001890.1 Cmo09g00189 388191

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo09g00189 1526 Gene3D Cytochrome P450 1032 1513 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo09g00189 1526 Gene3D Cytochrome P450 541 1030 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo09g00189 1526 Pfam Cytochrome P450 48 493 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo09g00189 1526 Pfam Cytochrome P450 556 1022 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo09g00189 1526 Pfam Cytochrome P450 1042 1486 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo09g00189 1526 PANTHER CYTOCHROME P450 FAMILY PROTEIN 19 509 - -
Cmo09g00189 1526 PANTHER CYTOCHROME P450 82C3-RELATED 1035 1521 - -
Cmo09g00189 1526 PANTHER CYTOCHROME P450 82C3-RELATED 526 1033 - -
Cmo09g00189 1526 PANTHER CYTOCHROME P450 82C3-RELATED 19 509 - -
Cmo09g00189 1526 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 455 464 IPR017972 GO:0005506|GO:0016705
Cmo09g00189 1526 PRINTS P450 superfamily signature 453 462 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo09g00189 1526 PRINTS P450 superfamily signature 321 338 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo09g00189 1526 PRINTS P450 superfamily signature 374 385 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo09g00189 1526 SUPERFAMILY Cytochrome P450 49 506 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo09g00189 1526 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 1453 1462 IPR017972 GO:0005506|GO:0016705
Cmo09g00189 1526 PRINTS E-class P450 group I signature 848 874 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo09g00189 1526 PRINTS E-class P450 group I signature 932 956 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo09g00189 1526 PRINTS E-class P450 group I signature 970 980 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo09g00189 1526 PRINTS E-class P450 group I signature 891 909 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo09g00189 1526 PRINTS E-class P450 group I signature 828 845 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo09g00189 1526 PRINTS E-class P450 group I signature 710 728 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo09g00189 1526 PRINTS E-class P450 group I signature 583 602 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo09g00189 1526 PRINTS E-class P450 group I signature 980 1003 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo09g00189 1526 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 973 982 IPR017972 GO:0005506|GO:0016705
Cmo09g00189 1526 Gene3D Cytochrome P450 30 517 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo09g00189 1526 PANTHER CYTOCHROME P450 FAMILY PROTEIN 1035 1521 - -
Cmo09g00189 1526 PANTHER CYTOCHROME P450 FAMILY PROTEIN 526 1033 - -
Cmo09g00189 1526 SUPERFAMILY Cytochrome P450 1045 1515 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo09g00189 1526 SUPERFAMILY Cytochrome P450 557 1027 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo09g00189 - - - cmax:111476968 963.755
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo09g00189 Cmo-Chr9:847331 Cmo13g00796 Cmo-Chr13:7545859 2.25E-76 dispersed
Cmo09g00188 Cmo-Chr9:839943 Cmo09g00189 Cmo-Chr9:847331 6.89E-93 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g842 . Blo12g00935 . . . . . . . . Cma01g01879 Cma09g00193 . . . . . . . . . . . . . . . . . . . . Cone7ag1411 . . . . Chy04g00562 . . . . . . . . . . . Cmo09g00189 . . . . . . . . . . . . . Cla05g01989 . . . . . . . . . Cme04g00671
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000018 15 22 15 12 7 19 2 17 20 14 15 18 14 11 26 20 19 10 1 20 12 9 8 16 8 19 17 19 17 20 442
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo09g00189 Cmo_Chr09 FPKM 0.133824 0.15739 0.179526 0.090431 15.688588 16.513945 16.405519 6.729708 7.293991 6.986963