Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo09g00190 ATGAACACGCCACCTTCCTTGCCGGACCTCTCCTTGCAGATCAGCCTTCCAATGTCAACGAACCCCAACCCACCAAGCTCAACCACCACGCATTCTGGTTGCAGTGCTGATTTGAGCCATAAAAATAATCTGTTCCGCTTAGGGTTTGAAGTGGGAGATGTGGGTCTTCTACAGCGTCATCATCAAGCATGTAATGTCCGTTCCCGCCGCGACTTCAAAAGAAGTGTCGGTGATGTTGCGTACGGAGTAAAAAGAAGCCCCCGCGCTCCCAGAATGAGATGGACTACAACTCTACACGCTCATTTTATACACGCCGTCGAGCTTCTTGGTGGCCATGAAAGAGCTACACCAAAATCTGTATTGGAGCTTATGAATGTCAAGGATCTAACCCTAGCTCATGTCAAAAGCCATTTGCAGATGTACAGAACAGTGAAGAACACTGTCAAGGGAACAGATGATTCTGGAAGGCCTGAGCTTGAACCAGATGCTGCTGTTTTATCTTCTTCTTCTTCGTCTTCATCGTCGGCGTCTGCTCAAAACTCGAACTTTGGATGGCGTCGTCTCCAGAGAATCCAAAGAAGTAGTTTGGTAACGTCAATGCACAAGAGATGTGACAGGACCAAGTCAAACGGCGACGTTTTCGCTAATTCCAGAGGAATTAAGGTGGAAGGAAGCAACGGAGATTATGAGAAGCCAATTGCCATGCAGCGGATTAATTTAGAGTTCACTCTTGGAACCCCAAGTTGGCAATTGGATTATGGCGATGCAAATGAGCTTGCTCTTCTCAATTGCTAA 795 47.04 MNTPPSLPDLSLQISLPMSTNPNPPSSTTTHSGCSADLSHKNNLFRLGFEVGDVGLLQRHHQACNVRSRRDFKRSVGDVAYGVKRSPRAPRMRWTTTLHAHFIHAVELLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRTVKNTVKGTDDSGRPELEPDAAVLSSSSSSSSSASAQNSNFGWRRLQRIQRSSLVTSMHKRCDRTKSNGDVFANSRGIKVEGSNGDYEKPIAMQRINLEFTLGTPSWQLDYGDANELALLNC 264
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 854431 855764 - CmoCh09G001900.1 Cmo09g00190 388192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo09g00190 264 MobiDBLite consensus disorder prediction 1 35 - -
Cmo09g00190 264 MobiDBLite consensus disorder prediction 164 181 - -
Cmo09g00190 264 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 90 143 IPR006447 GO:0003677
Cmo09g00190 264 PANTHER TRANSCRIPTION FACTOR KAN4-RELATED 5 256 - -
Cmo09g00190 264 MobiDBLite consensus disorder prediction 147 181 - -
Cmo09g00190 264 Pfam Myb-like DNA-binding domain 91 142 IPR001005 -
Cmo09g00190 264 SUPERFAMILY Homeodomain-like 87 144 IPR009057 -
Cmo09g00190 264 Gene3D - 89 146 - -
Cmo09g00190 264 PANTHER TRANSCRIPTION FACTOR KAN2-RELATED 5 256 IPR044847 GO:0000976|GO:0006355|GO:0010158
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo09g00190 Cmo12g00449 CCT
Cmo05g00220 Cmo09g00190 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo09g00190 Cmo-Chr9:854431 Cmo01g01938 Cmo-Chr1:13822365 3.24E-34 dispersed
Cmo12g00449 Cmo-Chr12:2750288 Cmo09g00190 Cmo-Chr9:854431 8.08E-41 wgd
Cmo05g00220 Cmo-Chr5:937944 Cmo09g00190 Cmo-Chr9:854431 1.38E-37 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10325 PF00249 Myb_DNA-binding 8.50E-06 CL0123 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo09g00190 - - bhj:120084780 352.443