Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo09g00199 ATGGCGGTTACAGATTTCTTCGTTGGAGAGATAGTCACCGAGCTTCTCAAAATGATGGTACAACTTTCGTCAAAATCATGCCACTGTAAAGCGATGGCAGCTCAAATCGCCAATTCGCTTCAGCAAATTTTGCCGATCATCGAAGAGATTAAGTACTCGGGGGTTGAATTGCCCGCTCATCGCCAATCTCAGTTAGATCGCTTCAGCGAGACTCTCAGGAAAGGCATTGAGATTACCGAGAAGGCTCTTCAATGCAGCCGATTGAACATTTACAGAAACTTGCGGCTTGCGCGGAAGTTGGAGAAGCTTGAAAAGGATATATGTCGCTTCATTAACAGCACCTTGCCGGTGCATATACTGGCCGATGTGCACCACGTGAGATTCGAGACCACCGAGCGGTTCGACCGGCTTGAAGGAGTTTGGCTGGAAAGGCGACTCGAGTCGATGAAGATTAGGGCAGACGGTCCCGTAGAGGGAAGGTGGTGGGCTGAGGAGGCGTTTATGAGGGCTCGGGAGGAGGAAAGGTTTGAGACTAATTCGGTGAATATAGGAATTGGGTTGCGTGTGGGCATGAGAAAATTGAAGGAGATGGTGATTGGAAGGGACGATTTGACGGCGGTTGGGATCAGTGGACTTGGGGGTTCGGGGAAGACAACTTTAGCCACAGAATTCTGCAATGATCCTGAAGTTCGAAGACACTTCAAGGAGAAAATTTTGGTCTTGACGGTGTCACAGTCCCCTGATGTGGAGCAACTGAGGAGAACTATCTGGGGATATGTAATGGGTAGTGACAGTGTCTACTCTTACGATCGGATTGTACATGGGAGGCCTGCAAATTCAGCTCTTTTGGTTCTGGATGATGTGTGGTCAATCTCAGTTCTTGAGAAGCTCATTCCAGACATATCTGGCTGCAAAACTCTAGTGGTTTCACGATTCAAATTCACTGAAGTTCTTAGAGCTACTTATGAAGTAGAGTTATTGAGGGAAAGTGAAGCGATTGCTCTGTTTTGCCATTATGCTTTCGGACAACAGTCAATTCCCCTGGCTGCTAACCATAACTTGGTTAAACAGGTTGTGAATGAATGCAAATGCCTGCCTCTAGCTCTTAAAGTCATAGGAGCGTCTCTCAGAGAACAGAGTGAGATGTTCTGGAATAATGCAAAGACAAGGTTGTCACGAGGCGAGCCTATTTGCGAGTCCCATGAGAACAATTTGCTTCGAAGAATGGCTATTAGTATGGAACATCTCTCAAGTAAAGTGAGAGAATGTTTCCTCGATTTGGGATGCTTTCCTGAAGACAAAAAGATTCCTCTTGATATTCTCATCAATGTTTGGAAGGAGTTGCATGATCTTGACGATGAAGAAGCTCTTGCTGTCCTTTTCGAGTTATCTCAGAAGAATCTCCTTACCCTGGTGAAAGATGCACGCGGTGGTGACATCTACAGCAGTTATTTCGAGATGTATGTCACTCATCACGATGTCTTAAGGGACCTTGCTCTTCATTTCAGTAGCCAGAAGAATGTAAATGACCGCAAGCGATTACTGATGTCAAAAAGTGAAATGCAACTTCCAAAAGAATGGTCAAGGAAATCAGATCAGCCGTTCAATGCTCGACTGGTTTCAATTCACACAGGTGAGATGAAAGAAATGGATTGGACGCAGATGATATTTCCTGAGGCTGAAGTGCTGATTCTAAATTTCTCTTCGAGTGGATACTTCTTGCCACCGTTTCTTTGCAACATGCCGAAGCTGAGAGCACTAGTTATGCTAAATAACAATGCAACACATGCAACTATCAGCAATTTCTCAGTTTTTTCTAGTTTGATCAACCTGAGAAGCATCTGGCTGGAAAAGGTTTCCATTGCACAACTATTCGATGCTTGCGCCCCGTTTAAAAATTTGAGGAAGATATCTCTCGTCTTCTGCAAGATTAAGAACAGCCTCGACGAGTCAGCTGCAAACGTATCCCAGATCTTCCCATTCCTTTTGGAACTCAAAATCGATCACTGCAACGATTTGGTTAAGCTACCTTCAAGCATTTGCGAGATGCAAAGTCTCAAGTGTCTCAGTGTCACCAATTGTCATAGTCTAAGTCAACTGCCTACCAACTTGTGGAAGCTGAAAAATCTACAAATCTTGAGACTTTCTGCTTGCCCACTTCTCACAACTCTACCCCCAGGCATTTGTGGACTTTCTTGTCTAAAGTACATTGACCTCTCTCAATGTGTTAACTTGATCAGCCTTCCTGAAGAAATTGGTAAGCTGGCAAACCTTGACAAAATTGACATGAGAGAATGCTCACTGATCAGGACGCTACCCAGATCAGTTGTGTGCTTGCAATCTCTCTGTCACGTTATCTGTGAGGAAGACGTCTCGTGGCTGTGGGAGGATTTGAAGAGTCATATGCCTAATCTGTACATTCAAGTCGCCGAGAAATGCTTCGACTTAGACTGGCTCAACGATTAA 2466 44.77 MAVTDFFVGEIVTELLKMMVQLSSKSCHCKAMAAQIANSLQQILPIIEEIKYSGVELPAHRQSQLDRFSETLRKGIEITEKALQCSRLNIYRNLRLARKLEKLEKDICRFINSTLPVHILADVHHVRFETTERFDRLEGVWLERRLESMKIRADGPVEGRWWAEEAFMRAREEERFETNSVNIGIGLRVGMRKLKEMVIGRDDLTAVGISGLGGSGKTTLATEFCNDPEVRRHFKEKILVLTVSQSPDVEQLRRTIWGYVMGSDSVYSYDRIVHGRPANSALLVLDDVWSISVLEKLIPDISGCKTLVVSRFKFTEVLRATYEVELLRESEAIALFCHYAFGQQSIPLAANHNLVKQVVNECKCLPLALKVIGASLREQSEMFWNNAKTRLSRGEPICESHENNLLRRMAISMEHLSSKVRECFLDLGCFPEDKKIPLDILINVWKELHDLDDEEALAVLFELSQKNLLTLVKDARGGDIYSSYFEMYVTHHDVLRDLALHFSSQKNVNDRKRLLMSKSEMQLPKEWSRKSDQPFNARLVSIHTGEMKEMDWTQMIFPEAEVLILNFSSSGYFLPPFLCNMPKLRALVMLNNNATHATISNFSVFSSLINLRSIWLEKVSIAQLFDACAPFKNLRKISLVFCKIKNSLDESAANVSQIFPFLLELKIDHCNDLVKLPSSICEMQSLKCLSVTNCHSLSQLPTNLWKLKNLQILRLSACPLLTTLPPGICGLSCLKYIDLSQCVNLISLPEEIGKLANLDKIDMRECSLIRTLPRSVVCLQSLCHVICEEDVSWLWEDLKSHMPNLYIQVAEKCFDLDWLND 821
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 895263 898888 - CmoCh09G001990.1 Cmo09g00199 388201

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo09g00199 821 Gene3D - 178 321 IPR027417 -
Cmo09g00199 821 Gene3D Ribonuclease Inhibitor 501 789 IPR032675 -
Cmo09g00199 821 Gene3D - 326 411 IPR042197 -
Cmo09g00199 821 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 191 427 IPR027417 -
Cmo09g00199 821 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 7 818 IPR044974 GO:0006952
Cmo09g00199 821 PANTHER DISEASE RESISTANCE PROTEIN ADR1 7 818 - -
Cmo09g00199 821 Pfam NB-ARC domain 192 413 IPR002182 GO:0043531
Cmo09g00199 821 SUPERFAMILY RNI-like 568 805 - -
Cmo09g00199 821 Pfam Arabidopsis broad-spectrum mildew resistance protein RPW8 8 130 IPR008808 -
Cmo09g00199 821 PRINTS Disease resistance protein signature 206 221 - -
Cmo09g00199 821 PRINTS Disease resistance protein signature 275 289 - -
Cmo09g00199 821 PRINTS Disease resistance protein signature 362 376 - -
Cmo09g00199 821 PRINTS Disease resistance protein signature 729 745 - -
Cmo09g00199 821 Gene3D - 412 500 IPR036388 -
Cmo09g00199 821 ProSiteProfiles RPW8 domain profile. 1 149 IPR008808 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo09g00199 - - - csv:101210269 1399.03
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo01g01926 Cmo09g00199 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo05g01204 Cmo-Chr5:9442150 Cmo09g00199 Cmo-Chr9:895263 7.44E-115 dispersed
Cmo09g00199 Cmo-Chr9:895263 Cmo06g00091 Cmo-Chr6:538002 1.01E-06 dispersed
Cmo05g00807 Cmo-Chr5:4765509 Cmo09g00199 Cmo-Chr9:895263 6.60E-18 transposed
Cmo01g01926 Cmo-Chr1:13778510 Cmo09g00199 Cmo-Chr9:895263 0 wgd
Cmo03g01006 Cmo-Chr3:7562205 Cmo09g00199 Cmo-Chr9:895263 2.16E-101 wgd
Cmo07g00736 Cmo-Chr7:3340568 Cmo09g00199 Cmo-Chr9:895263 1.34E-112 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g829 Blo01g01539 . Bda01g00559 . Bpe02g00418 . . Bma01g02289 . . Cma01g01868 Cma09g00205 Car01g01456 . . Cpe06g00140 . . . . . . . . . . . . . . . Cone4ag1553 Cone7ag1400 . . Lsi04g01596 Csa04g02374 . . . . . . . . . . Sed01g2631 Cmo01g01926 Cmo09g00199 . . . Car09g00173 . Cpe02g00159 Bhi09g03379 Tan01g4836 Cmetu07g2143 . Hepe01g1731 Mch11g0258 . Cla05g02001 Cam05g2152 Cec05g2169 Cco05g2217 Clacu05g2144 Cmu05g2014 Cre05g2140 . . Chy07g00103 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008490 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo09g00199 Cmo_Chr09 FPKM 0.0 0.0 0.0 0.0 0.036618 0.065028 0.097245 0.0 0.030953 0.02573