Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo09g00200 ATGGAACAAAGGAAGAGTAAAAGTTTGATCGATAGCATCAGTGACATATTCAGCAATGGCATACATTTTGCAGCGCCAATTTCCTCCTTGAGGACGAGTGAGCTTGATCTGGTGCGTGGTGTATTGCAAATGTTGCAAGGATTCTCCGGTTCCCTTTTTAGCTGGGATTGTAGTGGGAAGAAATTTTGTGCTAAAAGTGGGATATATGTTTCTCACCTCTCCCGATCTAGCCTTCTTGCCATTCTCAACCAATTTATGTACGCAGCGACATGTCTTCAGTTGACACAGCTCGTATTACAAGAAATTAATACAAGCGCAAAGTCCGTTCCTCCTACTTTAAGGGCGTTTGTTACATCTGTTTCTGGTTGGCTGAAGAGGCTGCGAGATTCAGTATTGAAGGAGGAGATTAAAATTCATGATGCTGGCTCTGGAACCACTCCCACTTTAATGGGTGCTGAATATTTATTACAAATAGTCCACAAAGCCATTCCCAAAGTATTCTTTGAATCTAGTGGTGCACTTACCACTGCTGATTTGGCCGTTCATGTCCTTGACAGCCTTTACAAGAAGCTTGATGAAGTGTGCCTGATACAAAATGGTCAGGAAGAAACTTACCAAATGCTGCTTCATATATTTGTTGGAAGTTTATTGCCGTATATTGAGGAGCTTGATTCCTGGGTTTTTGAAGGAATACTTGACGATCCTTTTGAGGAGTTGTTCTTCTATGCTAATGAAGCAGTCTCAGTTGATGAACATGATTTTTGGGAGAAGAGTTACTCTTTAAGATCACTGAAGTTGGAAGGTGAGCTCTCTTCATCAATTAAAAAGGAAGCAAATGAAAGAGAATCTATTTCTCTATCTCATTTGCTGAAGGGAAAAGACCAGTACACTGGAGGCTCTATAGCATGTCCCCTGTTTATGAAGGACATAGCTAAGTCGATAGTTGCTGCTGGAAAGTCTTTGCAGCTCATCCGTCATGTTTATGAAACATTGTCTCCTGCATCAGAAAAACAATATGGTGATGAGTTTAATGGTAGTGCTGATTATGGAGGAAGTTTGGCAAGGCTATCCTTGTCAGAAATCTTTTGTTTGTCATTGGCAGCTCTAATTGGTGATGGTGATCGCATATCTAGATACTTCTGGAAACATGACCAATATAAACTTGAGACGGATTCCTTATTCAAGTCCCACACAAACAAATTTGAAGTAACAAATGGCATTGGTGATTCAGCATGTAAAGAAAAACATTGGTATACTTTATTGGTCGATGCATTGGCGCTGAAAAGAGGTGTCTGTTTGAAGTCTGGACACAAGAATGCGAATAAGCTCATTGGTGAAAGAGAAAAGAATATTACATTTGATATGAAAAATTGTTTATGCTCCTTGGAATCGTTCCACCCTGAAAATCCAGTTATGACTGTGTGTACAACAATCCTGAAAGATAACACAAATGTTTGGAAAAGATTGAACCTGTCTAGATGTTTCAACTTGCCCCCTTTAAATGATGAGAGTTTATTGAAGGCAATATTTGGTGATGAGGACGCATCCTGTTCTGAAACAAAGGGGACAGATTTTACTTTTGGTTTCCAGTTTGATAAATACGAACACGTTCATTTGCAAAAGGAAGCAAAACTGATCGAGACATTGTTTCCTTTTCCCACAATTCTCCCCGAGTTCCGGGATGATCTCCATATTTCAGATCTCTTACCCTTCCAGAAGAATAGCACTCTTCCATCAAGGGTTCTAAGCTGGATGTCAAATACTGTGCCAAGGACAATGCCACTTATGATGGTCATTATGGAAGAATGCCTTGTCGTATATCTAGGACAGCAGGAATCTGTAAGAAACTCCTCTGATGGTATGCTACTAAGTGCTCCAGATTCTTTGGTGGTGTCAATTGTCAAAACTAATTCTTTGGATGGTGACGAGCATTCTAATTTAGTGAAACCACCGTTGACCCCACATAAAAGCTCTGCACATGGCTTTGGAATGGATGGGCTTGATTCACTTAAATTCACATACAAGGTATCTTGGCCACTTGAACTTATTGCCAACACAGAGGCAATTAAAAAGTATAATCAGGTGACAGGGTTCTTGTTAAAGGTTAAGCGAGCAAAGTTTGTTCTCGACAAAACTAGGCGTTGGATGTGGAAGGGCAAAGGCACTGTTGTAAACAATTGTAAGCGCCACTGGCTGGTAGAACAGAAACTCCTCCATTTTGTGGATGCCTTTCACCAATATGTAATGGACAGAGTCTATCATAGTGCATGGCGAGAACTCTGTGAAGGTATGGCAGCTGCACAATCTTTGGATGGGGTTATAGAGGTGCATGAGGCATACTTGCTGTCGATTCATAGACAGTGCTTTGTGGTTCCAGATAAGCTGTGGGCTCTAATTGCTAGCCGAATCAATGTTATCCTTGGGTTGGCCCTAGATTTTTACTCTGTGCAGCAAACTTTGAGTAGTGGTGGAGCTGTTTCCGCAATTAAGGCTCGGTGTGAAATGGAGGTCGACCGTATTGAGAAACAATTTGATGATTGCATCGCTTTCCTCCTCAGACTCTTCTACGTGGCGAATTTCTTTGCAGTCACCACGTTGTACTGTGGTTTTGTTCAGCAAAGGGTGGCTCCTTTGGGACCGCAAACGTGGGCAGATCACTTTTCCATGAAATCTAGGCGCTTCCCTTCATATTTTCCCGCTCTATTCCCAGTTCCCACGCTTTCATCTTCTCCCGCTTTCCCCTATCGTGAATGCACGGAAGGAAGAGCAACAGCCTTTGACATGGATGTTGTCACGATTCTCACCATTGCTGAGCTAATCCAACGCGGTCTTCCTCTCTCTGGAACTTCCAATATTCATCAATCTTCTTCCTGCAGTTCATTCCCGATAGAATTGTTTCAATCAAATCCAAGGCCTGTTCCATCAACCTTCTCATCTCCTGCGGAATCGAATCCTAGCCCTAAAGTTCTTGCTTCTCTGAAACATCCAGCCATCATCATTGGAACCCTGAATCTTCCTACCGATGCTTGCGGGCCGTCCAACTTAAAGTCTTCCTGTCGATGTCCCAGCAACAATTGCTTTCAGTTCACTGATGGTTCGGGTACTATTTGCTGTGATATACTTGATATCGACATTCGAGTGATCGGAAATGAAATTCGGGTCTTATCTTGGAATTTCATACCGTTGAGAAGAGCCGGCGGTTTCTTGGAAATTATAAAATGGGACTTTCTTTCCCCGGGCAGGGCACTTCCTCAATGCCCCGACGTCGATCCAGTTCCCTTGGATATAGGTGCTTACCCTACTTCTAACGATAAGTTAAAGCTTCGGCACTGCCTTTGTGGTGTATTAGAGTCAGTTGGTCCAGTTACTATTGTTCCGTGTACAGTAGGCCTGAGAAATTTGCAGAGCTGCAGGGAGTCCGATTCAACCGCGGGCTTGAAAAATATTCGAGGATTTATGGCTCAAATCATGATCTGTGAGTGTCGGTCATGTACTTCTAGGGAGCCGATGAGTTTACCAGACGATTCAGTTCGAGTACTTAATACTCATTCATTTGTCAAACCGACAGTTGTGTATCTTTGCGGCTCAGCGTCATCTTGGCACCCTGTCCTAACGAAATTTGTGGGAAGAGCCTTAACTTTTGGGGGTTTGAAAAAGAAGAAGGTCTCCATCGGTAAGGCCGAGTCCTGTTTGATGTATATCAGCACGGAGAACTCTTCTCTCCATCTATCTAGGTTATCTCGAATAAGGCTTCCATGTAAGACAAATGCCATCAAAGGGAAGGGAGAATGTGGATCATACACGGGTATAATTAATGGAGTATATATGCAAGGAATGCTTCTTGAGCTTGAGAACGGAGTCTGGCTTTTGTTGACCGATCATTTCCTTTCTCCACCTCATAGTCTTAGGGCGGGCGCCATTATATCTGTGCGGAATGTCCACTTTGTGAATCCTAAATTTCCTTGGTCGAAATTGCTTATACTTGGTGCTTGTGTCAAAACTAGCATCTTCGTGCAGCAATTTTCTCCATTGGAAACCAAGGTATTGCTTCTTATTTCGTCTTTCCGGAAAATGTTTGCTGGTGTTTTATCAGAAAAAGAAATTTTGGGATCAAAACATAAAGAAGGACTGGTTCAAATGTATGCTAAATCGCATTTACCTTCATCTATTTCCCGATATCAGCATGGATCAATTATGAAGCTGTACGAGCATGATTCATGTGGCTGTGGTAGTGAACCGTGGAACATTAGCCTTGAAACTATTTCCACGTATTCTGGAAGATTGCAGTTGGTTGATGCAACTGGAGGTATTGATGCTATGGTACCTGATCTTCCGTCAACTTGGAATGTCAATAGCGTATATGAGGTAACAAAATATATTGTGGTCATTGAAGGCATTCCACAAATGGATAAAAATGCAACCTGCAAAAACCTTCCCTCATATTCTTGCGTTGAAAATGGGTCTGATCTTGAGATATTCGAAGGTGGAACTTATCACCTTCTAGAAGTAACACACAAGTTTCCTATGTTACGAAAGTTTCCAGGCAAACATTTGGCACCAAACACATCAAGCATGTTCGTTGAGGCTGTCCTCCATCCTTGGAATTTATTTCTTACTGAGAGAGATAAAAAATATTCAATAAAGGCTTCAATGAAGCAGCTGAGGGAAGATACTGGAACTGCAAATGATCAGAAATATGTTGATAAAAGACTTAAAATTGGCCATCCATCTGGGAGGCTTGAAGGCCCAGATATGGTATGTGACTTTGATGAGTCTAGCTGTAGGCTTAATGGTCGTTGCACTTGTTACAAAGGATCTAATGAGGAACAGAAATGCTGCAACTTGAGCCATCACAGAATTTCTTGTGCAGCTACGGTTAGGAGTTCAGATCATAGTAGCCAATACATGTTAGGTTTCTTATACAACACAAAAAGCAAATCAAGTAGCAATGATGGTTCCAGAGTTGGTGCTCAACAGATTTTGTTAGAGATTCAACCTGATAGTCTTTTGAAGTATCAGTATAAAGGCAATAATATGCTTTCATCAACATTTCAGTTCCTGCAGATTGGCAATTACTACATCACAAAACGTAATAAAGATCATTCTTTATTCAACATAGAGGAATGCAATTATGTCAACAGCCAAAACCTTGTTATAACCTCAAGTACTCATTTATGGAGCATCTCATTCACTTTTGATAATGATATCCTCCATAGCATTGAATCGAACGACACTCAGTTCAATGACTTTCCCATCTGTGATGGTGGAGTGATTTCAGAAGATCAAATTGATTTGGATAATGGATCCTTTTCGGATATCTATCTTCATATTCCTTCAAATGCAAAAGATATTCTGGTGTTTGATCTTGAAAAACAGGAAGAAAATTCAAACCAACCAATTTTAAGACCTGAAGAGATCGGCAAAATTTCTCCCTGCTACAGAGATGTGACATCGTCGGACATGCATGCCTCTGTTATCCATGGATCTGACTGTCTGTTTCCTGAAGGAAACTTATCCTCTGCGGAAGGTCATGTGAAAATTTTTGGTTATCTGAAGAATCATGCTTTACCTGTTGGATTTGGACCTGGTGTTGTTGCTGTCAATTTTCTAGTCCTGGAGAAGAACATTGATCACGTCAATTTGCAAGATGAAATGTCTCAAAGGCAACCTCTTGTAAAGATTCCTCTTGCTGGATTCATATTGGATGATGGTTCATCCAGATGCAACTGCTGGACCAGTGGTGAAAGAGCAGCAGCCTTGTTGCGGCTGCACGATCCACTTCCACATTTAGCTTTTAAGAACATTGACTGGACATTAAAATGGACTGGGATGACTCGTAACTCCCGCGCCACTGCAAGCTATCATCTGGGCAGGGTTCTGAAGAACCATGGTAGAATTATTGTGAGAAGTTGCGGGTCAATCCTCGATTCTTATCAAGACCTAGATATTTCTCTTGCTTCGGATGATACTCTCAGCAGTGCAGATGAGAGTCTTCTCAAGTTCATATTAGTGAATTCATGTCTTGGTGCCATTTGGACTCTCATTGGGAATCAGTTGGATTCAGATGCTGTTGGAAGTCTGTTAAAGGAATACATAATGGAACCAAGGTTGATGCAGTCACAAAATATATGGGTGACGGATGGAATTGCTCCTGTAAGCCATTTCCGCTATGGCCGGCCGTTAGCCGAGATAGTGTCTCTAAATTGA 6207 41.63 MEQRKSKSLIDSISDIFSNGIHFAAPISSLRTSELDLVRGVLQMLQGFSGSLFSWDCSGKKFCAKSGIYVSHLSRSSLLAILNQFMYAATCLQLTQLVLQEINTSAKSVPPTLRAFVTSVSGWLKRLRDSVLKEEIKIHDAGSGTTPTLMGAEYLLQIVHKAIPKVFFESSGALTTADLAVHVLDSLYKKLDEVCLIQNGQEETYQMLLHIFVGSLLPYIEELDSWVFEGILDDPFEELFFYANEAVSVDEHDFWEKSYSLRSLKLEGELSSSIKKEANERESISLSHLLKGKDQYTGGSIACPLFMKDIAKSIVAAGKSLQLIRHVYETLSPASEKQYGDEFNGSADYGGSLARLSLSEIFCLSLAALIGDGDRISRYFWKHDQYKLETDSLFKSHTNKFEVTNGIGDSACKEKHWYTLLVDALALKRGVCLKSGHKNANKLIGEREKNITFDMKNCLCSLESFHPENPVMTVCTTILKDNTNVWKRLNLSRCFNLPPLNDESLLKAIFGDEDASCSETKGTDFTFGFQFDKYEHVHLQKEAKLIETLFPFPTILPEFRDDLHISDLLPFQKNSTLPSRVLSWMSNTVPRTMPLMMVIMEECLVVYLGQQESVRNSSDGMLLSAPDSLVVSIVKTNSLDGDEHSNLVKPPLTPHKSSAHGFGMDGLDSLKFTYKVSWPLELIANTEAIKKYNQVTGFLLKVKRAKFVLDKTRRWMWKGKGTVVNNCKRHWLVEQKLLHFVDAFHQYVMDRVYHSAWRELCEGMAAAQSLDGVIEVHEAYLLSIHRQCFVVPDKLWALIASRINVILGLALDFYSVQQTLSSGGAVSAIKARCEMEVDRIEKQFDDCIAFLLRLFYVANFFAVTTLYCGFVQQRVAPLGPQTWADHFSMKSRRFPSYFPALFPVPTLSSSPAFPYRECTEGRATAFDMDVVTILTIAELIQRGLPLSGTSNIHQSSSCSSFPIELFQSNPRPVPSTFSSPAESNPSPKVLASLKHPAIIIGTLNLPTDACGPSNLKSSCRCPSNNCFQFTDGSGTICCDILDIDIRVIGNEIRVLSWNFIPLRRAGGFLEIIKWDFLSPGRALPQCPDVDPVPLDIGAYPTSNDKLKLRHCLCGVLESVGPVTIVPCTVGLRNLQSCRESDSTAGLKNIRGFMAQIMICECRSCTSREPMSLPDDSVRVLNTHSFVKPTVVYLCGSASSWHPVLTKFVGRALTFGGLKKKKVSIGKAESCLMYISTENSSLHLSRLSRIRLPCKTNAIKGKGECGSYTGIINGVYMQGMLLELENGVWLLLTDHFLSPPHSLRAGAIISVRNVHFVNPKFPWSKLLILGACVKTSIFVQQFSPLETKVLLLISSFRKMFAGVLSEKEILGSKHKEGLVQMYAKSHLPSSISRYQHGSIMKLYEHDSCGCGSEPWNISLETISTYSGRLQLVDATGGIDAMVPDLPSTWNVNSVYEVTKYIVVIEGIPQMDKNATCKNLPSYSCVENGSDLEIFEGGTYHLLEVTHKFPMLRKFPGKHLAPNTSSMFVEAVLHPWNLFLTERDKKYSIKASMKQLREDTGTANDQKYVDKRLKIGHPSGRLEGPDMVCDFDESSCRLNGRCTCYKGSNEEQKCCNLSHHRISCAATVRSSDHSSQYMLGFLYNTKSKSSSNDGSRVGAQQILLEIQPDSLLKYQYKGNNMLSSTFQFLQIGNYYITKRNKDHSLFNIEECNYVNSQNLVITSSTHLWSISFTFDNDILHSIESNDTQFNDFPICDGGVISEDQIDLDNGSFSDIYLHIPSNAKDILVFDLEKQEENSNQPILRPEEIGKISPCYRDVTSSDMHASVIHGSDCLFPEGNLSSAEGHVKIFGYLKNHALPVGFGPGVVAVNFLVLEKNIDHVNLQDEMSQRQPLVKIPLAGFILDDGSSRCNCWTSGERAAALLRLHDPLPHLAFKNIDWTLKWTGMTRNSRATASYHLGRVLKNHGRIIVRSCGSILDSYQDLDISLASDDTLSSADESLLKFILVNSCLGAIWTLIGNQLDSDAVGSLLKEYIMEPRLMQSQNIWVTDGIAPVSHFRYGRPLAEIVSLN 2068
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 899338 914365 + CmoCh09G002000.1 Cmo09g00200 388202

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo09g00200 2068 Pfam Gamma tubulin complex component N-terminal 38 371 IPR041470 -
Cmo09g00200 2068 PANTHER GAMMA-TUBULIN COMPLEX COMPONENT 2 611 - -
Cmo09g00200 2068 PANTHER GAMMA-TUBULIN COMPLEX COMPONENT 611 854 - -
Cmo09g00200 2068 Pfam CST, telomere maintenance, complex subunit CTC1 993 1306 IPR028262 GO:0000723
Cmo09g00200 2068 PANTHER GAMMA TUBULIN COMPLEX PROTEIN 611 854 IPR007259 GO:0000226|GO:0000922|GO:0005815|GO:0007020|GO:0043015
Cmo09g00200 2068 Pfam Gamma tubulin complex component C-terminal 613 854 IPR040457 GO:0043015
Cmo09g00200 2068 Gene3D - 611 859 IPR042241 -
Cmo09g00200 2068 PANTHER GAMMA TUBULIN COMPLEX PROTEIN 2 611 IPR007259 GO:0000226|GO:0000922|GO:0005815|GO:0007020|GO:0043015
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo09g00200 K16572 TUBGCP5, GCP5; gamma-tubulin complex component 5 - csv:101221298 1031.94
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo09g00200 Cmo-Chr9:899338 Cmo14g00933 Cmo-Chr14:4953498 1.11E-06 dispersed
Cmo09g00200 Cmo-Chr9:899338 Cmo07g01333 Cmo-Chr7:7517223 3.40E-09 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g825 . . . . . . Bma04g00180 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi04g01594 . . . . . . . . . . . . . Cmo09g00200 . . . Car09g00174 . . Bhi09g03370 . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007705 1 2 1 0 1 1 1 1 1 2 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 4 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo09g00200 Cmo_Chr09 FPKM 0.091912 0.080609 0.009021 0.032158 0.032724 0.337136 0.102908 0.0 0.0 0.0