Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo09g00205 ATGCAAAGCAACGGTTCTGATTCGCAGCCGCAAGAACCAAATCAGCGCCACCAGCAGCCGCAGTCGTGGATGTCAATGCAGTACCCGCCGCCGGCTATGGTAATGCCGCACCATATGATGACGCCTCCGCATTACATGGCGCCGCCGCTTCCGCCGCCGCCGTATATGCATTATCACCCCCAATATCAGCATCACCATCTCCCTATTCAGCATTCGCAGCCGCTACAGGGATCTGGTGGCGAAAACAAAACGATTTGGGTGGGTGACTTGCATCATTGGATGGACGAGAGTTACCTCCATAACTGCTTTGCTTCCATTGGCGAGATTGCATCGATCAAGATCATTCGTAATAAGCAAAGTGGTTTGTCTGAGGGGTATGGGTTTGTAGAATTTTTTGCCCATGCAACAGCTGAAAAAGCTCTTCAGAACTATGCTGGAGTGCTCATGCCAAGTACAGAGCAGCCTTTCCGCTTGAATTGGGCGACATTTAGCACCGGTGACAAACGATCAGATAATGATCCCGATCTTTCTATTTTTGTTGGTGACTTAGCTGCAGATGTTACTGATGCTCTGTTGTACGATACATTTTCTAGTAAATTTCCTTCTGTTAAAGCAGCAAAAGTTGTCATTGATGCCAATACTGGTCGTTCAAAGGGTTATGGTTTTGTGCGGTTTGGAGATGACAATGAAAGGTCTCAGGCCATGTCTGAAATGAATGGTGTATATTGTTCGAGCAGACCTATGCGCATTGGTGCAGCAACGCCTAGAAAGTCTTCTGGATATCAGCAACAGAATTCTTCACAAGGTATATTTAAATTGTATGGTTACAATGTAGTAGTTTACTCATGGTTGTACACTTCCCTACCCCTTTTGGACTGCTCATGCATATGTTGTCCTCTGTTTATTATAGGAGGATATTCAACAAATGGTCCCTTTAGCCAAGGACTCCAATCTGAAGGAGATTCTGCAAATACAACTATATTTGTTGGAGGGCTTGATCCTAATGTCACCGATGAAGATCTGAGGCAACCTTTCTCACAGTATGGTGAGATAGTCTCTGTTAAAATACCAGTTGGTAAAGGATGTGGGTTTGTTCAATTTGCCAATAGAAATGATGCTGAAGAGGCCTTGCAGAAACTAAATGCAACTTTCAGAGATTTTGGTAACCAGTGGAATGGAGCTTACTACGGGGGGCACATATATGATGGCTATGGATATGGTCTGCCGCCTCACGATCCAAGTATGTATCAGGCAGCTTATGGAGCTTACACTGTATATGGAAGCCATCAACAACAAGATCGATTATTACTAAAAATGGATTTGTGGGTAGGTTGGTATCCTACATTAGGTTTCAAGATTATAACTGGATTTGTCGCTGATTTACTCAATAAACCCCTCTTCATTGCTGCTGCTGCTGCTAAGGACAACGACAAAGGAAGGAAGATGAGTTTTGAAGAGATGGATCGCAAAGGGAGGACAAGGGTGCAGTCAATGAGAGCATCTGCGAATCATGAAAAAGTTGAATTCCGAATTGCCTTGAAGGGAAGCGTGGATATGCCGGCGGCGAACTTGCCTGATGCAGCCAAAGCAACCACGAGTGGACGGGTTGCAAGCAGAGAGAGAAAAGTGGCTTTACAACAAGACGTTGACAAGCTGAAGAAGAAGCTCAGACATGAAGAAAATGTGGGTCGTGCTTTGAAGAGAGCTTTCACCAGACCTCTGGGAGCTTTACCCCGCCTCCCTCCTTTTCTTCCTCCCAATATGCTAGAACTTCTTGCCGAAGTAGCTGTTCTTGAAGAGGAGGTGGTGCGGCTTGAAGAGCAGGTTGTGCATTTCAGGCAGGACTTGTATCAGGAAGCTGTCAACATTTCCTCCTCCAAGAAGAACATGGAGCTTTCCCTCAAAAACAATTCCAAGCAAGTTCAATCCGAACATTCAGTTCAGAAGACTGATAATGGTCTGGGAAAGGAAAATGAATCACGTATGAATTCGACAAGTAACCACAAGGTTTCTTCTCTCCAGAAAACCCATACGATAAAGACCCCAGTCAAGAAATCTCCAGCTCGATACAAATCATCAGCGAAACCGAATTCTCCAAAACTGAATTTCGAAAACCGAGAGACGAGTCCAGAAAATGCTGAAGCTAGACAACTACGTGCTCCAGACAACAAGGTATCTGGTGATGATAGTCCGAACAATATCTCTGAAAATATTTTGAAATGCTTATCGAGCATTCTATTGAGGATGAGCTCAATCAAGAACAGAGGTGCCACTGAAAGTTTACATCTATTCTCAATGCTAACTACGATGCAAACTGAAGAGACGGATCATCAGGACCCTTATACTATATGTTCAGAGTTTGGAATGCGAGATATTGGTCCATACAAGAACGTACGTATAGTTGAAGCCAGTTCAATTAATACAAAGCGGACGACAAACTCATTGTTTCTATTCCAAAGATTGAAACTCCTCTTGGGGAAACTTGCTTCTGTCAACTTGCAACGTCTTACACATCAGGAGAAACTTGCCTTTTGGATCAACGTCTATAACTCCTGCATGATAAATGCATTTCTACAACTTGGAATACCAGAGAGTCCTGAGATGGTTGCTGGTTTGATGCAGAAGGTACAGATTATTATTGATTATCCTTCTGCTCTACTCTATATAGCTTCGTTCTTTCTTCAACCATTGGTTACGTTCGCATTATCATGTGGAAGCTGGTCGTCCCCAGCTGTGAGAGTGTACACAGCATCCCAGGTCGAGAACCAGCTAGAATTAGCAAAAAGAGACTATTTACAAGCTGCAGTAGGAATTGCATCAGAGAAGTTTGGAATCCCAAAGCTGCTGGATTGGTATTTGCTGGACTTTGGTAAAGACTTGGACTCCTTGGTTGACTGGGTCTGCCTTCAGCTACCAAGTGAATTAGGAAAAGAAGCAATTAAGTTGATAGAGAGGAGACAAAACCAGCCTCTTTCTCAGTTTGTTAAAGTAATACCTTATGAATTTAGCTTTAGATACCTTCTCTGCACATAA 3033 43.62 MQSNGSDSQPQEPNQRHQQPQSWMSMQYPPPAMVMPHHMMTPPHYMAPPLPPPPYMHYHPQYQHHHLPIQHSQPLQGSGGENKTIWVGDLHHWMDESYLHNCFASIGEIASIKIIRNKQSGLSEGYGFVEFFAHATAEKALQNYAGVLMPSTEQPFRLNWATFSTGDKRSDNDPDLSIFVGDLAADVTDALLYDTFSSKFPSVKAAKVVIDANTGRSKGYGFVRFGDDNERSQAMSEMNGVYCSSRPMRIGAATPRKSSGYQQQNSSQGIFKLYGYNVVVYSWLYTSLPLLDCSCICCPLFIIGGYSTNGPFSQGLQSEGDSANTTIFVGGLDPNVTDEDLRQPFSQYGEIVSVKIPVGKGCGFVQFANRNDAEEALQKLNATFRDFGNQWNGAYYGGHIYDGYGYGLPPHDPSMYQAAYGAYTVYGSHQQQDRLLLKMDLWVGWYPTLGFKIITGFVADLLNKPLFIAAAAAKDNDKGRKMSFEEMDRKGRTRVQSMRASANHEKVEFRIALKGSVDMPAANLPDAAKATTSGRVASRERKVALQQDVDKLKKKLRHEENVGRALKRAFTRPLGALPRLPPFLPPNMLELLAEVAVLEEEVVRLEEQVVHFRQDLYQEAVNISSSKKNMELSLKNNSKQVQSEHSVQKTDNGLGKENESRMNSTSNHKVSSLQKTHTIKTPVKKSPARYKSSAKPNSPKLNFENRETSPENAEARQLRAPDNKVSGDDSPNNISENILKCLSSILLRMSSIKNRGATESLHLFSMLTTMQTEETDHQDPYTICSEFGMRDIGPYKNVRIVEASSINTKRTTNSLFLFQRLKLLLGKLASVNLQRLTHQEKLAFWINVYNSCMINAFLQLGIPESPEMVAGLMQKVQIIIDYPSALLYIASFFLQPLVTFALSCGSWSSPAVRVYTASQVENQLELAKRDYLQAAVGIASEKFGIPKLLDWYLLDFGKDLDSLVDWVCLQLPSELGKEAIKLIERRQNQPLSQFVKVIPYEFSFRYLLCT 1010
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 942757 954981 - CmoCh09G002050.1 Cmo09g00205 388207

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo09g00205 1010 MobiDBLite consensus disorder prediction 707 723 - -
Cmo09g00205 1010 Gene3D - 164 270 IPR012677 -
Cmo09g00205 1010 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 83 163 IPR000504 GO:0003723
Cmo09g00205 1010 MobiDBLite consensus disorder prediction 1 28 - -
Cmo09g00205 1010 Coils Coil 370 390 - -
Cmo09g00205 1010 MobiDBLite consensus disorder prediction 657 681 - -
Cmo09g00205 1010 SUPERFAMILY RNA-binding domain, RBD 159 271 IPR035979 GO:0003676
Cmo09g00205 1010 PANTHER TERNARY COMPLEX FACTOR MIP1, LEUCINE-ZIPPER-RELATED 647 879 - -
Cmo09g00205 1010 PANTHER TERNARY COMPLEX FACTOR MIP1, LEUCINE-ZIPPER-RELATED 895 1008 - -
Cmo09g00205 1010 PANTHER TERNARY COMPLEX FACTOR MIP1, LEUCINE-ZIPPER-RELATED 499 646 - -
Cmo09g00205 1010 MobiDBLite consensus disorder prediction 1 26 - -
Cmo09g00205 1010 MobiDBLite consensus disorder prediction 691 706 - -
Cmo09g00205 1010 MobiDBLite consensus disorder prediction 632 731 - -
Cmo09g00205 1010 SUPERFAMILY RNA-binding domain, RBD 47 164 IPR035979 GO:0003676
Cmo09g00205 1010 Coils Coil 535 562 - -
Cmo09g00205 1010 CDD RRM2_SECp43_like 175 254 - -
Cmo09g00205 1010 Pfam Leucine-zipper of ternary complex factor MIP1 538 619 IPR025757 -
Cmo09g00205 1010 Gene3D - 82 162 IPR012677 -
Cmo09g00205 1010 CDD RRM1_SECp43_like 84 164 - -
Cmo09g00205 1010 Pfam Protein of unknown function, DUF547 834 932 IPR006869 -
Cmo09g00205 1010 PANTHER EXPRESSED PROTEIN 895 1008 - -
Cmo09g00205 1010 SUPERFAMILY RNA-binding domain, RBD 313 384 IPR035979 GO:0003676
Cmo09g00205 1010 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 85 147 IPR000504 GO:0003723
Cmo09g00205 1010 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 327 383 IPR000504 GO:0003723
Cmo09g00205 1010 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 178 247 IPR000504 GO:0003723
Cmo09g00205 1010 PANTHER EXPRESSED PROTEIN 647 879 - -
Cmo09g00205 1010 PANTHER EXPRESSED PROTEIN 499 646 - -
Cmo09g00205 1010 Coils Coil 588 615 - -
Cmo09g00205 1010 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 325 381 IPR000504 GO:0003723
Cmo09g00205 1010 SMART rrm1_1 177 251 IPR000504 GO:0003723
Cmo09g00205 1010 SMART rrm1_1 84 159 IPR000504 GO:0003723
Cmo09g00205 1010 SMART rrm1_1 326 394 IPR000504 GO:0003723
Cmo09g00205 1010 Gene3D - 312 392 IPR012677 -
Cmo09g00205 1010 MobiDBLite consensus disorder prediction 632 649 - -
Cmo09g00205 1010 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 176 255 IPR000504 GO:0003723
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo09g00205 - - - csv:101211254 807.749
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo09g00205 Cmo12g00459 CCT
Cmo09g00205 Cmo12g00459 ECH
Cmo01g01919 Cmo09g00205 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g00452 Cmo-Chr2:2362482 Cmo09g00205 Cmo-Chr9:942757 1.44E-135 dispersed
Cmo09g00205 Cmo-Chr9:942757 Cmo20g00899 Cmo-Chr20:4559291 1.32E-132 dispersed
Cmo15g00393 Cmo-Chr15:1804848 Cmo09g00205 Cmo-Chr9:942757 1.29E-54 dispersed
Cmo01g01920 Cmo-Chr1:13744169 Cmo09g00205 Cmo-Chr9:942757 0 transposed
Cmo01g01919 Cmo-Chr1:13740073 Cmo09g00205 Cmo-Chr9:942757 9.11E-12 wgd
Cmo12g00459 Cmo-Chr12:2817085 Cmo09g00205 Cmo-Chr9:942757 9.22E-172 wgd
Cmo03g01000 Cmo-Chr3:7528577 Cmo09g00205 Cmo-Chr9:942757 8.78E-110 wgd
Cmo07g00731 Cmo-Chr7:3308752 Cmo09g00205 Cmo-Chr9:942757 3.74E-113 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g813 Blo01g01536 . Bda01g00562 . . . Bma04g00177 Bma01g02286 . Cmo12g00459 Cma01g01860 Cma09g00213 Car01g01448 . Sed01g0343 Cpe06g00147 Cpe07g00462 Bhi04g00313 Tan02g1894 Cmetu05g1832 . Hepe10g0703 . Lcy13g2033 . . . . . . . Cone4ag1559 Cone7ag1392 . . Lsi04g01583 Csa04g02386 . Cme03g02008 . . . . . . . . Sed01g2645 Cmo01g01919 Cmo09g00205 Cma12g00518 . . Car09g00180 . Cpe02g00165 Bhi09g03353 Tan01g4821 Cmetu11g2597 . Hepe01g1741 Mch11g0266 . Cla05g02019 Cam05g2169 Cec05g2185 Cco05g2233 Clacu05g2162 Cmu05g2030 Cre05g2158 Lsi08g01446 Csa02g01994 Chy07g00112 Cme04g00689
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007331 0 4 1 0 1 1 3 1 1 1 1 1 2 1 1 2 1 0 2 1 1 1 1 1 1 1 1 2 1 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo09g00205 Cmo_Chr09 FPKM 4.988003 4.430078 3.721097 3.826457 9.282822 8.832817 9.547847 2.097992 1.82728 1.821037