Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo09g00207 ATGCTTTGTGCTTGGGCGAGAAGTCGGTGTTCTCATCGTTTGATCTATCTTCGTCGTTTCTCCTCATCGTCTTCATCTTCTTCTTCATTGTCTACTGCGCAAAAATCAATCGAGGGCTCGGAGAGTCTCCAGAATTCGCCTCTAGTCTCACCCCCAGTTCCAATTTTGCATCGTCCACAGAGCAGTTTGTTGCCTAATGCATCGCCCGCTTCTTTTTCTCGCAGTTCGATTATAACTATCTCCGCTGCTGTTTTTTCTGCCTTGGTCGCTTCCATTGCCCTTCTTCCCTCTGAAAATCGGTCTGATCGCCCCCAGGAGACTCATAATCCCTTGTATGATGGGATTGAAGGGGCAGTTCAGAGATCTAGCGATTCATTTAAGAGACTTTTTCATCACATTAAACAAACTGGCGTTGCCGCCTCGGTTCTCTGGCAATCGTTAAGGTCTGTGATGTCGTCAGCCAATCATGAGGTCCGGTCCGGCTTTGAACTCAGGGTCGCGGCATTGCTGGCTGACATTGCTGCAGCCAATGGGAGCCGTAGGGCGGCGATTGTCGGGGCGGGAGGCGGTGCTGTGGTGGATTGGTTGCTCGAGTCGGTGGCGGTTCCTCGGGATGGATGTGGAACTCAGGCCGAGTCGGCTAGAGCGCTGGCCTACTTGATTGCTGATCCTGATGTGTCTGCTTCCGTCCTGGGCAGGCCTCGTGCTGTTCCAAATCTTTTGAGGTTCATCTTCTCGTGTAAGCCTCGGCGAACGGAGCAGCATCCAAGACGTAGTTCATTCGATATTTCTGATTCTTTGAAAGGTAGGAGCATGCTTGTGGCTGCCATCATGGATATAGTTACGTCCAATTGTGATAGGTTAGAGAAGCTTGCTTTTGAGCCATCCTTGCCCGCGCATGCTGAAACTAGAGATATTGCAGCAGCCATTCAAGTTATTGAGGAAGGGGGTTTCCAATTTGATGAATCAAGTGGTGGCGAAGATGAAGATGGTGGAAGAGGAATCAAAGGAATAGGAATTAAGATTCTTGGAGGCACTTCCATTTTGGGACTTTCTAGAACAAGTGGGTTTGTGAAGTTGGCATATTCTGATGTTGGTCATGTAGAACTGGTGAAAAATACACCTAAAAGTCTAGTATCAGAGAAGCATGATAGCTCACTTGTAGCCAATTCTTCTGTTGTTCCTGGTCTGTGGGATGATTTGCATTGTGCGCATGTTGCTGTACCTTTTGCGGCGTGGGCGTTGGCAAATTGGTCAATGGCATCAGAACTGAACCGATTGCACATTCATGAACTAGATCAAGACGGACATGCTGTCATGACTGCACTAATGGCACCTGAAAGGTCTGTGAAATGGCATGGAAGTTTGGTAGCTAGGCTTTTACTGGAGGATCGTAATCTTCCCTTAAATGATTCTGTTTCTGATTGGAGCTCAAGCCTTCTTTCTACTGTTTCTCATGCAAGTAAAAATGATGACATCCCTTTGGCTCAGGCTGCTTTGTCTGCATTTTTGGCTTCTGTTGAACGGTTCCCTGAGGCACAAAAGAATATTATGGAGAAGGGTCTTCATCTAATGAGAGATGCTGCTATACGGACCCAAAAACATGGAGAGCTTCAAGAAGCTTTAGCAAAGGCATTAGAGTTGCTCAGCACTGGGTGGATGCGTCTATCAGCTGAAGAGAGTCAGAGATGGTCTGCTATACTACTTCAATGGGTCTTTGGCAAATTTTCTTCTGAATCTTTGAGGTCTTCTGCAACTAAAATCTTATCTTGCATTCTTGAAGACTATGGACCAAGCTCCATACCTATTTCTCAAGGATGGCTGGCTATACTGCTGACTGAAATTCTCGGTTCTACTAAGAAGACTGCAGTGAATGGAGCCACTGAGCTTAAAAATGACAAAGTGAAGACTAAGATTGAGCAGTCAAACATTGTTTTTGCCAGTCAAGTTGCTAGTCAGCTAGCAGGTGCAGTTGTTAACCTCGTGGTACACCAGTTTGGTGCAACTACTGATTCATTAGATACCTCTCCTCCGTTGGCAGATTTACTTTCACGTGAACCTTTTGTAGCACATTTAAAGAATATAAAAAAAGAGAATAGTCCAAAGTTTGATGCAGCTGATTCTGCAATGGCAACATTAAAGGGGATTAAAGCACTGACTGAAGTTTGTGCTGATGATTCTTCATGTCAGAGCAGAATAGCTGATTTTGGCGTTCTCTTTTTGCTGAGACGGCTTTTGTTATGTGATGATTATGAGAAGCTGGCAGCCATGGAAGCATATGATGCATCCAGAGCTTTTGAGGCTCAAGAACGTACTTCAAATGTCTCTGGGGAACCATCACTCTCAGAGAAGAAAAATGACTCATCTAGTGTCCGTGTACCGCCTACAGCTCACATCCGTAGACATGCTGCTCGGCTTTTAACCATCCTTTCACTTCTAGAGAAAGTCCAGAAGGAGATTGTTTCTGATGAAGAATTTTGTAGATGGCTTGAGGATTGTGCCAATGGGGCCATTCCTGGTTGCCATGATGCTAAATTGCAAAGCTATGCTAGAGCCACATTGCTAAATATATTTTGTATTAACCGTAGAGCATCTGACAATAGTTCTCCCTCTGATACTGATTCTACAAACAGGAAGAAGAATTGCCCCCGTTATGATGATATGATCTTTTTAATAAACCCCGAACTTCCTCACTGGAAAGTTCATGAAGAAAAGGATCAGGACACTGTTCAAAAGGACGAGTCATCTCTTTCACAAGCTAATTTCATTGATATTGATGGTGTTGCTATAGGAAATGATAACAATACCTCATCGTCATCTCATACATTTCAGAATGATTCCAGGCTAGACTCTCCTTTAGTAGATGTTGTTTTTATTCATGGCCTCCGTGGTGGACCTTACAAGTCATGGCGCATATCTGAGGACAAATCCTCAACAAAATCTGGACTAGTAGAGAAGATTGATCAGGAGGCAGGGAAACTAGGCACATTTTGGCCAGGTGAATGGCTTTCATCTGACTTCCCAAGGGCTCGTATGTTTACCCTTAAATACAAGACAAATCTCACACAGTGGTCTGGGGCTAGCCTTCCTCTTCAGGAAGTCAGCTCCATGTTACTGGATAAGCTTGTCGCTGCTGGAATTGGGGATCGACCTGTTGTATTTGTTACTCACAGCATGGGAGGGCTGGTTGTCAAGCAAATGCTGTATAAAGCCAAGAAAGAAAATATTGATAACCTTGTGGAAAATACAGCGGGAGTTGTCTTCTATAGCTGCCCACATTTTGGCAGCAAACTAGCAGACATGCCTTGGAGAATGGGTCTTGTATTCCGCCCTGCCCCTACCATAGGAGAGCTGAGAAGTGGGTCTCCTAGATTGGTGGAGCTGAATGATTTTCTCCGTCACCTCCATAAGAAAGGACTGATTGAGACGAAGGTGACCCCAATTGTTGAAGGTTATGGAGGATGGGCTTTCCGAATGGAAATTGTTCCTATTGAATCCGCATATCCTGGCTTTGGGGAACTAGTTCTTCATCAGTTCTTTTATCATGCATTTTCTATTAAAGATAGTCATAGAGGATATCTGGCACAAGGTTCTGATATATTTGCTGCTGATGCTGCCGAAAAGACATGCTTTCTCGACCAGAATTCAAGTGGCATCGTCTACGATCTGAATGCTAACGTAGAAACTAGAAGATACAGCCATTGGCCCCAAAATTTGTTTCCTTTTAGTATGTTGTTTGTTATCCCCTTTTCTGTAACCTTATGTGTTGATTTGAGCTCAAGGCCCGGCCTTCTTGTTGTCAGCTTCGATTCCAAGGATACCGGCGAAGTCAGATACTGCAGAACAACAATCTTTAGCCTGACTGTTCCTGTGACGATGTCGTTGCCGGAAAGCGTATCGCTGCGTTCTTTCGAACGAATTTCTTCAACTTATGCTTCTGTTTCTTCCTCCTTCTTAGGTTCTTCGAGACCTTTGAGGAGTTGTACAAGTGTAGTGACTCGGACGATGAAGTTCAGAAATGGAGGTGCTCTGAGGTTGTGCTGCTCGGATTCAAATCATTCTGCTCCTCTGCCTTCCACGACTGCGACAAGCACGGGCTCTGCTCCGCCGGTTCTGAAGAAGAAAAAGAGGTACAGGAGAGAGTATCCTGGAGAGAGCAAAGGCATTACTGAGGAGTTAAGGTTCGTCGCCATGAGGCTTCATAATGTTAGTGGTAAAAAGTTATCTGGTGACGCTGTGGATTCATCCAGCGAAGTTGAAGTAGAGGAGAAAGACGACGAAAATTTGGTGTTGAGTGACGATGATAATGATGAGGACGGGGATGGTACACAGACTTGGCAACCGAGCTTGGAAGGGTTCCTTAAATATTTGGTCGATAGTAAGCTCGTCTTCAGCACTGTGGAGCTAATCGTTGATGAATCCAGCGACGTTGCTTATAGTTACTTCAGAAAATCAGGGTTGGAACGTTCAGAATGTCTTGAAAAGGATCTAGAATGGTTCAGTGCACAGGGTATTGTGATACCTGATCCGACCAGTTCAGGAATTTCTTATGCTAAGTATCTGGAGGAACTTGCTGAGAGGAGTGCCCCTTTGTTCCTTTCCCATTATTATAATATCAACTTTTCACATATAGCAGGTGGGCAAGTGATAGCGAAACAGGTTTCTGAGAGACTCCTTGAAGGAAGAAAGCTTGAATTTTATACATGGGAAGAGGATGCAGAAGAATTACTGAAAAACGTTCGTGAGAAGCTTAACATGCTTGGAGAGGTGGGGGTTGTTTACTGCATCTATAAGAAAGATATTGGTGATTAG 4812 44.66 MLCAWARSRCSHRLIYLRRFSSSSSSSSSLSTAQKSIEGSESLQNSPLVSPPVPILHRPQSSLLPNASPASFSRSSIITISAAVFSALVASIALLPSENRSDRPQETHNPLYDGIEGAVQRSSDSFKRLFHHIKQTGVAASVLWQSLRSVMSSANHEVRSGFELRVAALLADIAAANGSRRAAIVGAGGGAVVDWLLESVAVPRDGCGTQAESARALAYLIADPDVSASVLGRPRAVPNLLRFIFSCKPRRTEQHPRRSSFDISDSLKGRSMLVAAIMDIVTSNCDRLEKLAFEPSLPAHAETRDIAAAIQVIEEGGFQFDESSGGEDEDGGRGIKGIGIKILGGTSILGLSRTSGFVKLAYSDVGHVELVKNTPKSLVSEKHDSSLVANSSVVPGLWDDLHCAHVAVPFAAWALANWSMASELNRLHIHELDQDGHAVMTALMAPERSVKWHGSLVARLLLEDRNLPLNDSVSDWSSSLLSTVSHASKNDDIPLAQAALSAFLASVERFPEAQKNIMEKGLHLMRDAAIRTQKHGELQEALAKALELLSTGWMRLSAEESQRWSAILLQWVFGKFSSESLRSSATKILSCILEDYGPSSIPISQGWLAILLTEILGSTKKTAVNGATELKNDKVKTKIEQSNIVFASQVASQLAGAVVNLVVHQFGATTDSLDTSPPLADLLSREPFVAHLKNIKKENSPKFDAADSAMATLKGIKALTEVCADDSSCQSRIADFGVLFLLRRLLLCDDYEKLAAMEAYDASRAFEAQERTSNVSGEPSLSEKKNDSSSVRVPPTAHIRRHAARLLTILSLLEKVQKEIVSDEEFCRWLEDCANGAIPGCHDAKLQSYARATLLNIFCINRRASDNSSPSDTDSTNRKKNCPRYDDMIFLINPELPHWKVHEEKDQDTVQKDESSLSQANFIDIDGVAIGNDNNTSSSSHTFQNDSRLDSPLVDVVFIHGLRGGPYKSWRISEDKSSTKSGLVEKIDQEAGKLGTFWPGEWLSSDFPRARMFTLKYKTNLTQWSGASLPLQEVSSMLLDKLVAAGIGDRPVVFVTHSMGGLVVKQMLYKAKKENIDNLVENTAGVVFYSCPHFGSKLADMPWRMGLVFRPAPTIGELRSGSPRLVELNDFLRHLHKKGLIETKVTPIVEGYGGWAFRMEIVPIESAYPGFGELVLHQFFYHAFSIKDSHRGYLAQGSDIFAADAAEKTCFLDQNSSGIVYDLNANVETRRYSHWPQNLFPFSMLFVIPFSVTLCVDLSSRPGLLVVSFDSKDTGEVRYCRTTIFSLTVPVTMSLPESVSLRSFERISSTYASVSSSFLGSSRPLRSCTSVVTRTMKFRNGGALRLCCSDSNHSAPLPSTTATSTGSAPPVLKKKKRYRREYPGESKGITEELRFVAMRLHNVSGKKLSGDAVDSSSEVEVEEKDDENLVLSDDDNDEDGDGTQTWQPSLEGFLKYLVDSKLVFSTVELIVDESSDVAYSYFRKSGLERSECLEKDLEWFSAQGIVIPDPTSSGISYAKYLEELAERSAPLFLSHYYNINFSHIAGGQVIAKQVSERLLEGRKLEFYTWEEDAEELLKNVREKLNMLGEVGVVYCIYKKDIGD 1603
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 959974 972423 - CmoCh09G002070.1 Cmo09g00207 388209

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo09g00207 1603 MobiDBLite consensus disorder prediction 771 794 - -
Cmo09g00207 1603 SUPERFAMILY Heme oxygenase-like 1445 1588 IPR016084 -
Cmo09g00207 1603 Coils Coil 1570 1590 - -
Cmo09g00207 1603 MobiDBLite consensus disorder prediction 23 49 - -
Cmo09g00207 1603 SUPERFAMILY ARM repeat 165 699 IPR016024 -
Cmo09g00207 1603 Gene3D - 1441 1592 IPR016084 -
Cmo09g00207 1603 PANTHER ALPHA/BETA-HYDROLASES SUPERFAMILY PROTEIN 6 1187 - -
Cmo09g00207 1603 MobiDBLite consensus disorder prediction 23 51 - -
Cmo09g00207 1603 MobiDBLite consensus disorder prediction 1416 1441 - -
Cmo09g00207 1603 Gene3D alpha/beta hydrolase 955 1138 IPR029058 -
Cmo09g00207 1603 SUPERFAMILY alpha/beta-Hydrolases 954 1157 IPR029058 -
Cmo09g00207 1603 MobiDBLite consensus disorder prediction 1407 1443 - -
Cmo09g00207 1603 Pfam Heme oxygenase 1460 1586 IPR016053 GO:0004392|GO:0006788
Cmo09g00207 1603 Gene3D - 542 885 IPR011989 -
Cmo09g00207 1603 MobiDBLite consensus disorder prediction 771 793 - -
Cmo09g00207 1603 CDD HemeO 1447 1589 IPR002051 GO:0004392|GO:0006788
Cmo09g00207 1603 MobiDBLite consensus disorder prediction 1355 1374 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo09g00207 K23504 SERAC1; protein SERAC1 - csv:101222471 1968.74
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo09g00207 Cmo-Chr9:959974 Cmo11g00547 Cmo-Chr11:2661458 1.14E-56 dispersed
Cmo01g01917 Cmo-Chr1:13729960 Cmo09g00207 Cmo-Chr9:959974 3.43E-60 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g809 . Blo12g00948 . Bda03g00222 . Bpe04g00189 Bma04g00176 . . . . Cma09g00214 . . . Cpe06g00149 . . . . . . . . . . . . . . . . . . Cone20ag0175 Lsi04g01580 Csa04g02389 . . . . . . . . . . . . Cmo09g00207 . . . Car09g00182 . . Bhi09g03347 . . . . . . Cla05g02022 Cam05g2172 Cec05g2188 Cco05g2236 Clacu05g2165 Cmu05g2033 Cre05g2161 . . Chy07g00115 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005432 1 4 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 5 2 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo09g00207 Cmo_Chr09 FPKM 6.919284 7.547011 6.551846 6.997828 14.11656 13.616751 15.499855 4.89616 4.167182 5.120827