Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo09g00228 ATGGGTATGGGTTCCAAACAGAATGAATTCAGTGAGGATTATCTGATACTGAAGCCAAAGGAAGCATCTCTGGTGGATGTGTTTCTGTTCATACTTCCTTTAGGATCCAGAAGGATCAGAAGCTTGATCGATTGCCCCGACGCCAAGGAAGAGTCATACAGCAGCTTCAAAGCCCGATGTACCATTTTCGTCTCTATTTTGGTGCAGAAATTCCTGCTCGCCCTCGCCGCCCCGCTCCTGACCTTACGCGCATTCCTCTCAGTTATTCAACCCCTTTTCTTCAACTATATGATTGGAAAGGGTGAGTTCTATACCAGGTCGGATTCCGGACCGGAGGTGAGATGTCGAGACTGGCAAATAGAGGATCCGGACGACAAGGGTTTCAAATATTATGGAGCCTTAACCATGATGGCTTCCCAATTGGCGTATGAAGATTATACAGCTTCCCCCTCCGTTGTTCATTCAGTGGTAAATGGTTGCTGGCAGAATAAAGCAACGACTGGTGCATTTATGTTTCAAAACACAGCGAAAGACCCGAATGTAACAGTTGTGGCATTTAGAGGGACTTCCGTATTTGAGGCTTCGGATTGGATGGTAGATTTCAACATCTCTTGGTACAAAATAGAGGGCATTGGGCGCATCCACAGTGGGTTCATGCAGGCCCTTGGCCTCCAAAAGGCTACCGGCTGGCCCAAAGAGCTCCCTGAAGCCGAACATGAGTTCGCATACTACACATTACGCCGAAGGCTTAGAGACATTGTCAAAAGCAACGATAAGGCGAAATTTATCATCACTGGGCACAGTTTGGGCGGCGCCCTTGCCACCCTTTTTGTCACTTTGCTAGCCCTACACCAGGACTCCACAATTCTCCAGAGGCTCCAAGCTGTTTATACCTTCGGCCAGCCTAGAGTTGGAGACAAAGATTTTGCAGAGTTTATGGTAAACACTGTTACAAGATATGGATTAAAGTATTACAGATATGTCTATTCTTTTGACTTGGTACCTAGAGTGCCTTTCGATTCTATTATTTTTAAGTATAAACACTTCGGTGGATGCCTCTACTTCGATTGCTTCTACAACGGCAAGTTTCGTAAGGAGCAGCCCAACACAAACTACTTCTCGCTAATTTGGGTGATACCAAAATATTCAAGTGCACATTGGGAGCTTATAATAGGGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAAATGGCTTGGAAGGAACATGAATTTAGTAAAAATTATGTGATACTAAAGCCGCATAATGCAAACCTGTTTGATCTGTTTCTGTTCTTACTTCCTTTTGGCTTCAAAAAGAGGAAGTTGATGGATTGTCCCGACGCCAACGAAGACTCTTACACAAGCTTTGCTGATCGATTAATAATCTTCGTCTCGTTGCTGTTGCAGATATTCATTCTCGCCATCGCCACCCCGCTCGCTTACTTAGACGTCTTCCTCCAAAAACTCTTCAACTTCGTCTCCTTCAATGGTGGCATTCCGCGCCTTTTCATCAAGTTGATGCGAGGAGAGACTTTGGTGCAGCCTGATAAAAATTCGCCAGATTATACGTCGGTTGTGGGATTTACAGATTGGAGAAGAGATTTGGATAGCTCCATAAAACCTAACGACACCTTCAGATATTATAGTGCCCTAACTGTAATGGCTTCCAAACTGTCCTATGAATCCCTTCCTTTTGTCGAATCCGTCGTGAACGATCGTTGGAAGATGAAGTTACTCGGTTACTACGATTTCTGGAATGATTTCCAAAACCGAGCAACGACTCAAGCATTCATGTTTCAAAACACAGCCTCAGATCCAAACATAATAGTGGTAGCTTTCAGAGGGACTTCTCCACTGGACGCATTCGATTGGCAAGTAAATGTGGACTTCTCTTGGTACGACATTCATGGCGTAGGCCGCATTCATAGTGGCTTCATGAAGGCTCTCGGCCTCCAAAAGCGTAAAGGTTGGCCCAAAGAACTCATTCCATCAACAACAACAACAACCCAATTCGCTTACTACACTCTCCGTCAAAAACTCATTGACATTGCCAAAAGCAATGCCGATGCAAGGTTCATCTTCACCGGCCACAGCTTGGGCGCAGCTCTCGCTATCCTCTTCGTTGCCATACTTGGCCTTCACGACGAGTCAACGGTGCTAGAGAAGCTACAGGCCATCTACAGCTACGGCCAGCCGAGAGCTGGTGACCGACATTTTGCAGAGTTTATGGTAAGCATCATCCAAAAATACAACTTTGAATATCACAGATACGTTTATTTTAGTGACTTGGTGCCTAGACTTCCCGCTGATGGCATCATTTTCAAATACAAACACTTCGGCAGCTGCATCTATTTTGACAGTCTTTACAGAGGCAGAATTGTGAAGGAGCAGCCAAACAAGAACTATTTCTCGTTGCTATGGCTGGTGCCCAAGTACCTAAATGCATGGTTGGAGCTTATAAGGAGTTTCGTGATCCCATTTGTGAAGGGTTATGATTACTATGAGAGTTTGCCAATGAAAGGGGTAAGGTTTATTGGACTGTTTATTCCAGGGCTCACCGCTCACATTCCTACGGACTATGTTAATTCCACCCGTTTAGGAAAATTAAACGTACCTCAGGAGATTCTTGGAAATGAAGACTACTGCATAGAACCTGACTACTAA 2664 44.71 MGMGSKQNEFSEDYLILKPKEASLVDVFLFILPLGSRRIRSLIDCPDAKEESYSSFKARCTIFVSILVQKFLLALAAPLLTLRAFLSVIQPLFFNYMIGKGEFYTRSDSGPEVRCRDWQIEDPDDKGFKYYGALTMMASQLAYEDYTASPSVVHSVVNGCWQNKATTGAFMFQNTAKDPNVTVVAFRGTSVFEASDWMVDFNISWYKIEGIGRIHSGFMQALGLQKATGWPKELPEAEHEFAYYTLRRRLRDIVKSNDKAKFIITGHSLGGALATLFVTLLALHQDSTILQRLQAVYTFGQPRVGDKDFAEFMVNTVTRYGLKYYRYVYSFDLVPRVPFDSIIFKYKHFGGCLYFDCFYNGKFRKEQPNTNYFSLIWVIPKYSSAHWELIIGKKKKKKKKKKKMAWKEHEFSKNYVILKPHNANLFDLFLFLLPFGFKKRKLMDCPDANEDSYTSFADRLIIFVSLLLQIFILAIATPLAYLDVFLQKLFNFVSFNGGIPRLFIKLMRGETLVQPDKNSPDYTSVVGFTDWRRDLDSSIKPNDTFRYYSALTVMASKLSYESLPFVESVVNDRWKMKLLGYYDFWNDFQNRATTQAFMFQNTASDPNIIVVAFRGTSPLDAFDWQVNVDFSWYDIHGVGRIHSGFMKALGLQKRKGWPKELIPSTTTTTQFAYYTLRQKLIDIAKSNADARFIFTGHSLGAALAILFVAILGLHDESTVLEKLQAIYSYGQPRAGDRHFAEFMVSIIQKYNFEYHRYVYFSDLVPRLPADGIIFKYKHFGSCIYFDSLYRGRIVKEQPNKNYFSLLWLVPKYLNAWLELIRSFVIPFVKGYDYYESLPMKGVRFIGLFIPGLTAHIPTDYVNSTRLGKLNVPQEILGNEDYCIEPDY 887
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1055712 1061088 - CmoCh09G002280.1 Cmo09g00228 388230

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo09g00228 887 SUPERFAMILY alpha/beta-Hydrolases 137 369 IPR029058 -
Cmo09g00228 887 PANTHER ALPHA/BETA-HYDROLASES SUPERFAMILY PROTEIN 6 390 IPR044819 GO:0004806|GO:0006629
Cmo09g00228 887 Gene3D alpha/beta hydrolase 551 804 IPR029058 -
Cmo09g00228 887 PANTHER ALPHA/BETA-HYDROLASES SUPERFAMILY PROTEIN 407 871 IPR044819 GO:0004806|GO:0006629
Cmo09g00228 887 PANTHER ALPHA/BETA-HYDROLASES SUPERFAMILY PROTEIN 6 390 - -
Cmo09g00228 887 SUPERFAMILY alpha/beta-Hydrolases 547 791 IPR029058 -
Cmo09g00228 887 CDD Lipase_3 134 356 - -
Cmo09g00228 887 CDD Lipase_3 545 786 - -
Cmo09g00228 887 PANTHER ALPHA/BETA-HYDROLASES SUPERFAMILY PROTEIN 407 871 - -
Cmo09g00228 887 Pfam Lipase (class 3) 610 770 IPR002921 GO:0006629
Cmo09g00228 887 Pfam Lipase (class 3) 183 340 IPR002921 GO:0006629
Cmo09g00228 887 Gene3D alpha/beta hydrolase 124 420 IPR029058 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo09g00228 - - - csv:101203391 852.818
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo01g01895 Cmo09g00228 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g01894 Cmo-Chr1:13641965 Cmo09g00228 Cmo-Chr9:1055712 2.64E-141 dispersed
Cmo01g01895 Cmo-Chr1:13647347 Cmo09g00228 Cmo-Chr9:1055712 2.01E-122 dispersed
Cmo08g01180 Cmo-Chr8:7502399 Cmo09g00228 Cmo-Chr9:1055712 1.55E-07 dispersed
Cmo09g00228 Cmo-Chr9:1055712 Cmo14g01256 Cmo-Chr14:10573583 4.60E-63 dispersed
Cmo14g00640 Cmo-Chr14:3218643 Cmo09g00228 Cmo-Chr9:1055712 2.00E-06 dispersed
Cmo19g01064 Cmo-Chr19:9228361 Cmo09g00228 Cmo-Chr9:1055712 2.68E-06 dispersed
Cmo01g01893 Cmo-Chr1:13639507 Cmo09g00228 Cmo-Chr9:1055712 1.08E-120 wgd
Cmo03g00990 Cmo-Chr3:7449745 Cmo09g00228 Cmo-Chr9:1055712 2.16E-88 wgd
Cmo07g00717 Cmo-Chr7:3232681 Cmo09g00228 Cmo-Chr9:1055712 7.68E-88 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g755 . . . . . . . . . . Cma01g01835 Cma09g00234 . . . Cpe06g00163 . . . . . . . . . . . . . . . . Cone7ag1369 . . Lsi04g01552 Csa04g02414 . . . . . . . . . . Sed01g2671 Cmo01g01895 Cmo09g00228 . . . . . Cpe02g00184 Bhi09g03313 Tan01g4775 Cmetu07g1301 . . Mch11g0294 . Cla05g02045 Cam05g2196 Cec05g2214 Cco05g2259 Clacu05g2190 Cmu05g2056 Cre05g2185 . . Chy07g00138 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002909 0 2 0 1 0 2 0 2 2 2 1 2 3 3 2 4 2 1 3 2 2 1 2 4 3 2 1 1 5 0 55
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo09g00228 Cmo_Chr09 FPKM 2.238506 3.171621 9.518007 9.707327 8.258565 8.892845 9.704909 33.829308 34.722206 34.46846