Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo09g00229 ATGGAGATTATGATGATGATGCAACAAATGGAGAAAATCCCTGAATTTTACAATCATCTCTCACCGCCCTCCGATCATTTCAGCTCAAGCACCACCGACCCACATTGCCTGGAAACCCTTCAACAAGCCGCGGAGTCCTCGTCGCCTCCATTCACCAACAACCTACCTTATAATTTGCCTCAAACTGTTCCATTCCCCACCAGTTCACGGTGGCGAAACTCTGGCGGTGAAACGGACTTGCAGAAACAGAGGTCTGTGGCGGCGATGAGGGAGATGATATTCCGAATAGCAGTGATGCAACCAATCCAAATAGACCCAGAAGCGGTGAAGCCACCAAAGAGGAGGAACGTCAAGATTTCAACCGACCCACAAAGCGTAGCGGCTCGACATAGAAGAGAGAGAATTAGCGAGAGAATTAGGATACTCCAAAGATTGGTCCCTGGAGGTACCAAAATGGATACCGCTTCTATGTTGGATGAGGCTATACATTACGTAAAATTCTTGAAGACCCAAGTGCAATCCCTCGAAAGAGCCGCCACCAACAGGCCACTCCCTGATGCTGCTGCAGCAGCAGCAGCAGCAGCAGCACCTGGCGTAGGGTTTCCTCTGGAAATGTCAAGTGGCAGCTATGTCCCCATGGCCAAACCATCCCAAATGACTCACAACCTTGAGCAGTACGGAGATGCTTAA 690 49.86 MEIMMMMQQMEKIPEFYNHLSPPSDHFSSSTTDPHCLETLQQAAESSSPPFTNNLPYNLPQTVPFPTSSRWRNSGGETDLQKQRSVAAMREMIFRIAVMQPIQIDPEAVKPPKRRNVKISTDPQSVAARHRRERISERIRILQRLVPGGTKMDTASMLDEAIHYVKFLKTQVQSLERAATNRPLPDAAAAAAAAAAPGVGFPLEMSSGSYVPMAKPSQMTHNLEQYGDA 229
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1062565 1063254 - CmoCh09G002290.1 Cmo09g00229 388231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo09g00229 229 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 119 168 IPR011598 GO:0046983
Cmo09g00229 229 SMART finulus 125 174 IPR011598 GO:0046983
Cmo09g00229 229 Pfam Helix-loop-helix DNA-binding domain 129 168 IPR011598 GO:0046983
Cmo09g00229 229 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 124 177 IPR036638 GO:0046983
Cmo09g00229 229 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 29 220 IPR045843 GO:0003700|GO:0006355
Cmo09g00229 229 PANTHER BASIC HELIX-LOOP-HELIX (BHLH)-LIKE PROTEIN 29 220 - -
Cmo09g00229 229 Gene3D - 122 185 IPR036638 GO:0046983
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo05g00176 Cmo09g00229 CCT
Cmo05g00176 Cmo09g00229 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo07g00819 Cmo-Chr7:3798815 Cmo09g00229 Cmo-Chr9:1062565 9.36E-38 dispersed
Cmo08g00718 Cmo-Chr8:4523831 Cmo09g00229 Cmo-Chr9:1062565 8.49E-31 dispersed
Cmo09g00229 Cmo-Chr9:1062565 Cmo14g01314 Cmo-Chr14:10989147 3.98E-34 dispersed
Cmo05g00176 Cmo-Chr5:764159 Cmo09g00229 Cmo-Chr9:1062565 1.58E-50 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10328 PF00010 HLH 1.50E-06 No_clan Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo09g00229 - - bhj:120087062 291.967