Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo09g00230 ATGACGAAGGGAAGAGAAACATTTTATGAACATAACTTCACTGGGCATAATCTACCTGTTACTAATATTGTTGTTGACTATGGAGGATCCAATGCTATTATAATCTCTTCCTCTGTGGATCGTACTTGTAAGGTGTGGAGCTTATCTAATGGGAAATTATTAAGAAATATCATATTTCCTTCAATCATTGATGCAATTGCTTTGGATCCTGGTGAACGTGTCTTCTATGGTGGTGTAGAGATGAGAAGTTCTACACTGCTGCACTTAATGCTAAATGCCCATCCGGCAGTGCCTACGGATTGCATATTCTCGGCTCATTGTCTAATCAAAGAAATTGTATAA 342 38.01 MTKGRETFYEHNFTGHNLPVTNIVVDYGGSNAIIISSSVDRTCKVWSLSNGKLLRNIIFPSIIDAIALDPGERVFYGGVEMRSSTLLHLMLNAHPAVPTDCIFSAHCLIKEIV 113
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1064897 1068566 - CmoCh09G002300.1 Cmo09g00230 388232

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo09g00230 113 Gene3D - 3 109 IPR015943 GO:0005515
Cmo09g00230 113 ProSiteProfiles Trp-Asp (WD) repeats profile. 13 56 IPR001680 GO:0005515
Cmo09g00230 113 SMART WD40_4 6 47 IPR001680 GO:0005515
Cmo09g00230 113 PANTHER WD-REPEAT PROTEIN 18 6 79 IPR045227 -
Cmo09g00230 113 PANTHER WD REPEAT-CONTAINING PROTEIN 18 6 79 - -
Cmo09g00230 113 SUPERFAMILY WD40 repeat-like 11 104 IPR036322 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo09g00230 K14829 IPI3; pre-rRNA-processing protein IPI3 - csv:101204364 133.65
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g01923 Cmo-Chr1:13766033 Cmo09g00230 Cmo-Chr9:1064897 4.50E-41 transposed
Cmo16g00457 Cmo-Chr16:2194095 Cmo09g00230 Cmo-Chr9:1064897 4.79E-11 transposed
Cmo01g01892 Cmo-Chr1:13636210 Cmo09g00230 Cmo-Chr9:1064897 1.61E-17 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g753 Blo01g01526 . Bda01g00570 . Bpe02g00431 . . Bma01g02270 . . . . . . . Cpe06g00165 . . . . . . . . . . . . . . . . . . . Lsi04g01549 Csa04g02420 . . . . . . . . . . Sed09g0365 . Cmo09g00230 . . . . . Cpe02g00186 Bhi09g03308 Tan01g4765 Cmetu07g1918 . Hepe01g1773 Mch11g0299 . Cla05g02050 Cam05g2202 Cec05g2219 . Clacu05g2194 Cmu05g2060 . . . Chy07g00141 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003200 1 2 2 1 1 1 1 1 1 1 1 1 2 1 2 3 1 2 2 1 1 1 2 1 2 1 3 2 8 1 50
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo09g00230 Cmo_Chr09 FPKM 1.440141 0.976964 2.208295 1.671652 2.320741 1.27683 2.079268 2.089464 2.112691 2.89679