Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo09g00240 ATGGACGGAGAAGTTTTCTCCGCCGTAGATTCATCACCGACGGCGACAGAGAAGAGGAAGCAAAGGCATCAGAATCAGCTTCAAAAAGAAAGGCCTTACAGAGGAATAAGGATGAGGAAGTGGGGGAAGTGGGTTGCCGAAATCAGAGAACCCAACAAGCGCTCCAGGATTTGGCTTGGTTCTTACACAACCCCCCTCGCCGCCGCTAGAGCTTACGACACCGCCGTCTTCTACCTACGAGGCCCTACTGCCCGCCTTAACTTCCCCGAATTGATGTTCGAGGAAGACCAGCTTCACGACATGTCGGCCGCCTCCATACGCAAACGAGCCACCGAAGTCGGCGCTAGGGTTGACGCTATCGAAATCTCCCTCCACGCCTCCAACTCAAACTCCAACTCCAACTCCAATTCCAGTACTCACACTTCCGAGAAGCCCGATTTAAACGATTCTGCGATTGTAACCGCCGCGTACACGGCTTATACAAATACTCCATCTCGGCTAATTTTGGATCCTTCCATGCACCACCCGTATCATATTGAGCCACGTGGTGGAAGAGAATGTCGGTGGCGGTGCTGTCAGCTTCATACCCCCGTGAGAGGGCCGTACAAGAAATGA 615 53.01 MDGEVFSAVDSSPTATEKRKQRHQNQLQKERPYRGIRMRKWGKWVAEIREPNKRSRIWLGSYTTPLAAARAYDTAVFYLRGPTARLNFPELMFEEDQLHDMSAASIRKRATEVGARVDAIEISLHASNSNSNSNSNSSTHTSEKPDLNDSAIVTAAYTAYTNTPSRLILDPSMHHPYHIEPRGGRECRWRCCQLHTPVRGPYKK 204
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1083972 1086213 - CmoCh09G002400.1 Cmo09g00240 388242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo09g00240 204 PRINTS Ethylene responsive element binding protein signature 71 91 IPR001471 GO:0003700|GO:0006355
Cmo09g00240 204 PRINTS Ethylene responsive element binding protein signature 33 44 IPR001471 GO:0003700|GO:0006355
Cmo09g00240 204 MobiDBLite consensus disorder prediction 127 147 - -
Cmo09g00240 204 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-1-RELATED 12 149 - -
Cmo09g00240 204 MobiDBLite consensus disorder prediction 15 29 - -
Cmo09g00240 204 SUPERFAMILY DNA-binding domain 33 90 IPR016177 GO:0003677
Cmo09g00240 204 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-1-RELATED 12 149 - -
Cmo09g00240 204 Pfam AP2 domain 33 81 IPR001471 GO:0003700|GO:0006355
Cmo09g00240 204 SMART rav1_2 32 95 IPR001471 GO:0003700|GO:0006355
Cmo09g00240 204 CDD AP2 33 91 IPR001471 GO:0003700|GO:0006355
Cmo09g00240 204 Gene3D AP2/ERF domain 32 90 IPR036955 GO:0003700|GO:0006355
Cmo09g00240 204 ProSiteProfiles AP2/ERF domain profile. 32 89 IPR001471 GO:0003700|GO:0006355
Cmo09g00240 204 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo09g00240 Cmo-Chr9:1083972 Cmo10g00689 Cmo-Chr10:3142161 6.88E-24 dispersed
Cmo15g00011 Cmo-Chr15:87925 Cmo09g00240 Cmo-Chr9:1083972 3.46E-21 dispersed
Cmo01g01882 Cmo-Chr1:13603157 Cmo09g00240 Cmo-Chr9:1083972 7.31E-71 wgd
Cmo05g00168 Cmo-Chr5:722820 Cmo09g00240 Cmo-Chr9:1083972 1.26E-53 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10331 PF00847 AP2 2.50E-11 CL0081 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo09g00240 K09286 - csv:101219005 223.787