Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo09g00240 | ATGGACGGAGAAGTTTTCTCCGCCGTAGATTCATCACCGACGGCGACAGAGAAGAGGAAGCAAAGGCATCAGAATCAGCTTCAAAAAGAAAGGCCTTACAGAGGAATAAGGATGAGGAAGTGGGGGAAGTGGGTTGCCGAAATCAGAGAACCCAACAAGCGCTCCAGGATTTGGCTTGGTTCTTACACAACCCCCCTCGCCGCCGCTAGAGCTTACGACACCGCCGTCTTCTACCTACGAGGCCCTACTGCCCGCCTTAACTTCCCCGAATTGATGTTCGAGGAAGACCAGCTTCACGACATGTCGGCCGCCTCCATACGCAAACGAGCCACCGAAGTCGGCGCTAGGGTTGACGCTATCGAAATCTCCCTCCACGCCTCCAACTCAAACTCCAACTCCAACTCCAATTCCAGTACTCACACTTCCGAGAAGCCCGATTTAAACGATTCTGCGATTGTAACCGCCGCGTACACGGCTTATACAAATACTCCATCTCGGCTAATTTTGGATCCTTCCATGCACCACCCGTATCATATTGAGCCACGTGGTGGAAGAGAATGTCGGTGGCGGTGCTGTCAGCTTCATACCCCCGTGAGAGGGCCGTACAAGAAATGA | 615 | 53.01 | MDGEVFSAVDSSPTATEKRKQRHQNQLQKERPYRGIRMRKWGKWVAEIREPNKRSRIWLGSYTTPLAAARAYDTAVFYLRGPTARLNFPELMFEEDQLHDMSAASIRKRATEVGARVDAIEISLHASNSNSNSNSNSSTHTSEKPDLNDSAIVTAAYTAYTNTPSRLILDPSMHHPYHIEPRGGRECRWRCCQLHTPVRGPYKK | 204 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 1083972 | 1086213 | - | CmoCh09G002400.1 | Cmo09g00240 | 388242 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo09g00240 | 204 | PRINTS | Ethylene responsive element binding protein signature | 71 | 91 | IPR001471 | GO:0003700|GO:0006355 | |
Cmo09g00240 | 204 | PRINTS | Ethylene responsive element binding protein signature | 33 | 44 | IPR001471 | GO:0003700|GO:0006355 | |
Cmo09g00240 | 204 | MobiDBLite | consensus disorder prediction | 127 | 147 | - | - | |
Cmo09g00240 | 204 | PANTHER | ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-1-RELATED | 12 | 149 | - | - | |
Cmo09g00240 | 204 | MobiDBLite | consensus disorder prediction | 15 | 29 | - | - | |
Cmo09g00240 | 204 | SUPERFAMILY | DNA-binding domain | 33 | 90 | IPR016177 | GO:0003677 | |
Cmo09g00240 | 204 | PANTHER | ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-1-RELATED | 12 | 149 | - | - | |
Cmo09g00240 | 204 | Pfam | AP2 domain | 33 | 81 | IPR001471 | GO:0003700|GO:0006355 | |
Cmo09g00240 | 204 | SMART | rav1_2 | 32 | 95 | IPR001471 | GO:0003700|GO:0006355 | |
Cmo09g00240 | 204 | CDD | AP2 | 33 | 91 | IPR001471 | GO:0003700|GO:0006355 | |
Cmo09g00240 | 204 | Gene3D | AP2/ERF domain | 32 | 90 | IPR036955 | GO:0003700|GO:0006355 | |
Cmo09g00240 | 204 | ProSiteProfiles | AP2/ERF domain profile. | 32 | 89 | IPR001471 | GO:0003700|GO:0006355 | |
Cmo09g00240 | 204 | MobiDBLite | consensus disorder prediction | 1 | 29 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo09g00240 | Cmo-Chr9:1083972 | Cmo10g00689 | Cmo-Chr10:3142161 | 6.88E-24 | dispersed | |
Cmo15g00011 | Cmo-Chr15:87925 | Cmo09g00240 | Cmo-Chr9:1083972 | 3.46E-21 | dispersed | |
Cmo01g01882 | Cmo-Chr1:13603157 | Cmo09g00240 | Cmo-Chr9:1083972 | 7.31E-71 | wgd | |
Cmo05g00168 | Cmo-Chr5:722820 | Cmo09g00240 | Cmo-Chr9:1083972 | 1.26E-53 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
10331 | PF00847 | AP2 | 2.50E-11 | CL0081 | Cmo | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo09g00240 | K09286 | - | csv:101219005 | 223.787 |