Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo09g00241 ATGAATAGCACAACTTTCGTCTGTAATCCTATGGACGCTCTGCCATTATTACCCTCCTCTCAGTTGCTGTTTCCGAATAACGCCATCAATTTCAGGCATAGGATCTCCATTCGTGTAAAACCCACTTCTCAGGGTTCGTGTAGATGGCGAATCCGAGCCACTGCCGAAAACGGAGCTTCATCGGCGTCGACCTCGCAGATCGACATGGTGAGGAACAGGGAGGGGGTTTTTACCGCCAAACAAAGCAAGGTTGTTGTGCTTTGGGATCTCGATAATAAGCCCCCTCGTGGGCCGCCATACGAGGCGGCTATGGCGCTGAAACGAGTGGCGCAACGCTTCGGCCAAGTGGTCGACATGTCGGCTTACGCCAATCGCCACGCTTTTATCCATTTGCCGCAATGGGTTGTTGAAGAACGCCGCGAGCGTCGGCAATTGGACATTCTTGAGCGCAAAGGGTTGTTCACGCCGTCCGAATCGTACGTCTGCGGGGTCTGCGGTCGCAAGTGCAAAACAAACCTAGACCTCAAGAAGCATTTCAAGCAACTTCATGAACGCGAGCGCCAGAAGAAATTGAACAGAATGAGGTCTCTCAAGGGCAAAAAGCGGCAGCGTTATAAGGAAAAGTTCGTATCTGGGAACCACAAGTACAATGAAGCAGCCAGGTCTCTGATTACTCCAAAAGTTGGGTATGGGCTGGCCTCAGAATTGAGACGTGCTGGGGTTTTTGTGAAAACAGTGGAGGATAAGCCACAGGCGGCTGATTGGGCTTTGAAGAGGCAGATGCAACACTCGATGAGTCGTGGTATTGATTGGATGTTTCTTGTTTCCGATGATTCGGATTTTTCAGAGATGTTAAGGAAGGCTAAGGAGGCTAATTTGGGAACTGTGGTGGTGGGAGATCGTGATAGAGCATTGGGTAGGCACGCAGATTTATGGGTCCCATGGATGGGGGTTGAAAATGGGGATGTTACAGAGGAGGATTTGGTGCCCAAAAGATGGAGGACGAGGAGAACCCAAGAGGATTTTGATGAAGACGATGGTTTTTCAGTTTCTCGTTATTATGGAGAGGCTGAAAGTGGTAGTGATTTGGAGAGTGTAGTGCAAGAGCTTGCTTCCGCCAGTACAGAGTTGAATGGCTTTAGAATTTCTGCTTTCTCAGAGGGGGAAGATGATGATGAATGGGTTGAAGACGAAGTGGCATCTGACTATCTGCTAGAGATGAGTGACGAGGAAGATGGGTATTTCTGA 1248 49.36 MNSTTFVCNPMDALPLLPSSQLLFPNNAINFRHRISIRVKPTSQGSCRWRIRATAENGASSASTSQIDMVRNREGVFTAKQSKVVVLWDLDNKPPRGPPYEAAMALKRVAQRFGQVVDMSAYANRHAFIHLPQWVVEERRERRQLDILERKGLFTPSESYVCGVCGRKCKTNLDLKKHFKQLHERERQKKLNRMRSLKGKKRQRYKEKFVSGNHKYNEAARSLITPKVGYGLASELRRAGVFVKTVEDKPQAADWALKRQMQHSMSRGIDWMFLVSDDSDFSEMLRKAKEANLGTVVVGDRDRALGRHADLWVPWMGVENGDVTEEDLVPKRWRTRRTQEDFDEDDGFSVSRYYGEAESGSDLESVVQELASASTELNGFRISAFSEGEDDDEWVEDEVASDYLLEMSDEEDGYF 415
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1088796 1090043 - CmoCh09G002410.1 Cmo09g00241 388243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo09g00241 415 ProSiteProfiles Zinc finger C2H2 type domain profile. 160 188 IPR013087 -
Cmo09g00241 415 Coils Coil 180 200 - -
Cmo09g00241 415 PANTHER - 51 389 - -
Cmo09g00241 415 CDD PIN_LabA-like 170 300 - -
Cmo09g00241 415 PANTHER OS06G0166200 PROTEIN 51 389 - -
Cmo09g00241 415 ProSitePatterns Zinc finger C2H2 type domain signature. 162 183 IPR013087 -
Cmo09g00241 415 Gene3D - 77 316 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo09g00241 Cmo-Chr9:1088796 Cmo16g01094 Cmo-Chr16:7725276 1.74E-69 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10332 None None None None Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo09g00241 - - csv:101206044 711.449