Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo09g00245 ATGGATTGTTCGAAGTCGGACATGATGGAGACTGAATTTGCGTCAAATAGAGCCGGCGAAGGCGATTCTGTTCGCGACTTGCTCACATTGGCTCGGCAATTCATCGATCAACGAAACCCTACCCAAGCCCTCCAAGCGGTTGTAATGGCAATGAGAACCCAAGGTGGGGATGCAGCAGTCTTTCAATCCTTGCACCGTGCCCGTGAGATGTACAGAACCCGATTTCAGGAGACTGCTGATGTTGATCAACTAGCTTCTTTATTTGCAGAGTGTGCCATAGCTGAAGCCCAGCCTCTGAACCCTGAACCTACAGATAGTAACAATGACATATCTGGCTCTTTGGTTGTGGATGCTCACGGTAATTCTATTCTGGCAGAAACTGGTAGGATGCAAATTGTTATGGATGCATTCTCAGACGGGAGCAGTTTTATTTGTTTGCAATGTGGGGGTCTTGTTAGTAACCATCGCAAAGATGAGCATTATGCATATTGCTGCTTTTATGTTGGCACGCCCCTAGTTGTTGTCAATGCTAGTCAAGCTAAGGTTTTAAACGATGTAGCCGATTGTTGTAAGTGGGTTCTCCCTTGA 588 46.43 MDCSKSDMMETEFASNRAGEGDSVRDLLTLARQFIDQRNPTQALQAVVMAMRTQGGDAAVFQSLHRAREMYRTRFQETADVDQLASLFAECAIAEAQPLNPEPTDSNNDISGSLVVDAHGNSILAETGRMQIVMDAFSDGSSFICLQCGGLVSNHRKDEHYAYCCFYVGTPLVVVNASQAKVLNDVADCCKWVLP 195
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1108150 1111967 - CmoCh09G002450.1 Cmo09g00245 388247

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo09g00245 195 PANTHER OS02G0158600 PROTEIN 1 165 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo09g00245 - - - mcha:111012957 284.648
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo01g01878 Cmo09g00245 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g01878 Cmo-Chr1:13581850 Cmo09g00245 Cmo-Chr9:1108150 5.09E-98 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g730 . . . . . . . . . . Cma01g01822 . Car01g01424 . . Cpe06g00173 . . . . . . . . . . . . . . . . . . . Lsi04g01530 Csa04g02433 . . . Blo18g00703 Bda08g01366 Bda01g01604 Bpe02g01793 Bpe05g00033 Bma01g00661 . Sed01g2684 Cmo01g01878 Cmo09g00245 . . . . . Cpe02g00192 Bhi09g03294 Tan01g4745 Cmetu07g0758 . Hepe01g1790 Mch11g0323 . Cla05g02067 . Cec05g2238 Cco05g2279 . Cmu05g2078 Cre05g2203 . . Chy07g00150 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007186 2 1 1 1 2 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 2 1 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo09g00245 Cmo_Chr09 FPKM 0.290679 0.0 1.300699 0.689102 1.060108 0.382367 0.60589 0.0 0.0 0.0