Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo09g00247 | ATGCTCCTTCTCAACAATAACATGGCCGTGGAGCTCATGGTGGGGTTTGGGGATGCTACCACCGCTACTAATTTCACGCCCAAGTTGGAAGAAAATGCCGCTGTTTCTGCTGTTCAAGAAGCCGCTTCTGCTGGGATTCAGAGCGTCCAGAATTTCCTCCGATTGATGTCCCATACCCCTAATCAACACCACTCCCAACACGATTCTTCCACCTCCACGACTCCCAATGCTATCGCTCCATACGATGCCGTCGCCGATTCCGTCGTCAGCAATTTCAAGAAGGTCATTTCTTTGCTCGATCGGAATAGAACCGGTCACGCCCGCTTCAGAAGGGCGCCGGTTCTTCATACTCCCCCGCCGCCTCCTCCACCGAAGGTCAAGCCGTTGCAGCACCAAGATCCGAGTTCGTCATCAGCCCCTCAGGTTCAAGTAAAGAAACAGGAATCAGTCTCTGCTTTTAAGGTTTATTGCCCCACGCCCTCCTCTGTTGTGCGTTTGCCTCCTCTGCCTCACAACAACCCCCATCAGCCTTCTCATCCACCGAATACGTTCCAAGCACAGCAAAATACTTCGTCGGTGGTACTAAAAAATGGGTCTGTAGATAGAAAAGATCCGACTACCACCATCAACTTCGTAGCATCGCCCCCGATTTCCGCTGCAAATTCCTATATTTCTTCTCTAACCGGAGACACCGAAAGCTTACAGCCATCTATGTCATCTGGGTTCCAGTTCACCCACATGTCCCAGGTCTCTTCCGCCGGAAAGCCCCCACTTTCAACCTCCTCGCTAAAGAGAAAATGCAATTCTATGGACGATTCCGCCATGAAGTGTGCCTCATCCTCCGGTCGGTGTCACTGTTCCAAGAAGAGGAAAAACAGGATAAAAAGAGTCATCAGAGTTCCGGCGGTGAGCTCCAAACTTGCGGATATCCCACCGGACGATTACTCCTGGAGAAAGTACGGCCAAAAACCCATTAAAGGCTCTCCCCATCCAAGGGGATATTACAAATGTAGCAGTCTGAGAGGCTGTCCAGCACGGAAACACGTAGAACGTGCCTTAGACGATCCAACAATGCTGATTGTAACTTACGAAAACGATCACAATCACGCCCACTCCACCGAAACACCTGCAACGCTTGTTCTGGAATCGTCATAA | 1155 | 50.65 | MLLLNNNMAVELMVGFGDATTATNFTPKLEENAAVSAVQEAASAGIQSVQNFLRLMSHTPNQHHSQHDSSTSTTPNAIAPYDAVADSVVSNFKKVISLLDRNRTGHARFRRAPVLHTPPPPPPPKVKPLQHQDPSSSSAPQVQVKKQESVSAFKVYCPTPSSVVRLPPLPHNNPHQPSHPPNTFQAQQNTSSVVLKNGSVDRKDPTTTINFVASPPISAANSYISSLTGDTESLQPSMSSGFQFTHMSQVSSAGKPPLSTSSLKRKCNSMDDSAMKCASSSGRCHCSKKRKNRIKRVIRVPAVSSKLADIPPDDYSWRKYGQKPIKGSPHPRGYYKCSSLRGCPARKHVERALDDPTMLIVTYENDHNHAHSTETPATLVLESS | 384 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 1115812 | 1117975 | - | CmoCh09G002470.1 | Cmo09g00247 | 388249 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo09g00247 | 384 | ProSiteProfiles | WRKY domain profile. | 306 | 372 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Cmo09g00247 | 384 | MobiDBLite | consensus disorder prediction | 114 | 129 | - | - | |
Cmo09g00247 | 384 | MobiDBLite | consensus disorder prediction | 130 | 145 | - | - | |
Cmo09g00247 | 384 | SUPERFAMILY | WRKY DNA-binding domain | 309 | 370 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 | |
Cmo09g00247 | 384 | Pfam | Plant zinc cluster domain | 264 | 309 | IPR018872 | - | |
Cmo09g00247 | 384 | MobiDBLite | consensus disorder prediction | 107 | 145 | - | - | |
Cmo09g00247 | 384 | Pfam | WRKY DNA -binding domain | 313 | 369 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Cmo09g00247 | 384 | PANTHER | WRKY TRANSCRIPTION FACTOR NTEIG-D48 | 30 | 384 | - | - | |
Cmo09g00247 | 384 | PANTHER | WRKY TRANSCRIPTION FACTOR 21-RELATED | 30 | 384 | IPR044810 | GO:0003700 | |
Cmo09g00247 | 384 | Gene3D | WRKY domain | 297 | 372 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 | |
Cmo09g00247 | 384 | SMART | WRKY_cls | 311 | 371 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cmo01g01876 | Cmo09g00247 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo01g01620 | Cmo-Chr1:12343923 | Cmo09g00247 | Cmo-Chr9:1115812 | 1.56E-77 | dispersed | |
Cmo02g01814 | Cmo-Chr2:10274315 | Cmo09g00247 | Cmo-Chr9:1115812 | 2.92E-52 | dispersed | |
Cmo09g00247 | Cmo-Chr9:1115812 | Cmo20g00978 | Cmo-Chr20:5451258 | 3.20E-14 | dispersed | |
Cmo01g01876 | Cmo-Chr1:13576602 | Cmo09g00247 | Cmo-Chr9:1115812 | 0 | wgd | |
Cmo03g00982 | Cmo-Chr3:7396973 | Cmo09g00247 | Cmo-Chr9:1115812 | 4.64E-110 | wgd | |
Cmo07g00703 | Cmo-Chr7:3171880 | Cmo09g00247 | Cmo-Chr9:1115812 | 6.15E-10 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
10333 | PF03106 | WRKY | 3.90E-25 | CL0274 | Cmo | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo09g00247 | - | - | cmo:103493562 | 652.514 |