Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo09g00247 ATGCTCCTTCTCAACAATAACATGGCCGTGGAGCTCATGGTGGGGTTTGGGGATGCTACCACCGCTACTAATTTCACGCCCAAGTTGGAAGAAAATGCCGCTGTTTCTGCTGTTCAAGAAGCCGCTTCTGCTGGGATTCAGAGCGTCCAGAATTTCCTCCGATTGATGTCCCATACCCCTAATCAACACCACTCCCAACACGATTCTTCCACCTCCACGACTCCCAATGCTATCGCTCCATACGATGCCGTCGCCGATTCCGTCGTCAGCAATTTCAAGAAGGTCATTTCTTTGCTCGATCGGAATAGAACCGGTCACGCCCGCTTCAGAAGGGCGCCGGTTCTTCATACTCCCCCGCCGCCTCCTCCACCGAAGGTCAAGCCGTTGCAGCACCAAGATCCGAGTTCGTCATCAGCCCCTCAGGTTCAAGTAAAGAAACAGGAATCAGTCTCTGCTTTTAAGGTTTATTGCCCCACGCCCTCCTCTGTTGTGCGTTTGCCTCCTCTGCCTCACAACAACCCCCATCAGCCTTCTCATCCACCGAATACGTTCCAAGCACAGCAAAATACTTCGTCGGTGGTACTAAAAAATGGGTCTGTAGATAGAAAAGATCCGACTACCACCATCAACTTCGTAGCATCGCCCCCGATTTCCGCTGCAAATTCCTATATTTCTTCTCTAACCGGAGACACCGAAAGCTTACAGCCATCTATGTCATCTGGGTTCCAGTTCACCCACATGTCCCAGGTCTCTTCCGCCGGAAAGCCCCCACTTTCAACCTCCTCGCTAAAGAGAAAATGCAATTCTATGGACGATTCCGCCATGAAGTGTGCCTCATCCTCCGGTCGGTGTCACTGTTCCAAGAAGAGGAAAAACAGGATAAAAAGAGTCATCAGAGTTCCGGCGGTGAGCTCCAAACTTGCGGATATCCCACCGGACGATTACTCCTGGAGAAAGTACGGCCAAAAACCCATTAAAGGCTCTCCCCATCCAAGGGGATATTACAAATGTAGCAGTCTGAGAGGCTGTCCAGCACGGAAACACGTAGAACGTGCCTTAGACGATCCAACAATGCTGATTGTAACTTACGAAAACGATCACAATCACGCCCACTCCACCGAAACACCTGCAACGCTTGTTCTGGAATCGTCATAA 1155 50.65 MLLLNNNMAVELMVGFGDATTATNFTPKLEENAAVSAVQEAASAGIQSVQNFLRLMSHTPNQHHSQHDSSTSTTPNAIAPYDAVADSVVSNFKKVISLLDRNRTGHARFRRAPVLHTPPPPPPPKVKPLQHQDPSSSSAPQVQVKKQESVSAFKVYCPTPSSVVRLPPLPHNNPHQPSHPPNTFQAQQNTSSVVLKNGSVDRKDPTTTINFVASPPISAANSYISSLTGDTESLQPSMSSGFQFTHMSQVSSAGKPPLSTSSLKRKCNSMDDSAMKCASSSGRCHCSKKRKNRIKRVIRVPAVSSKLADIPPDDYSWRKYGQKPIKGSPHPRGYYKCSSLRGCPARKHVERALDDPTMLIVTYENDHNHAHSTETPATLVLESS 384
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1115812 1117975 - CmoCh09G002470.1 Cmo09g00247 388249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo09g00247 384 ProSiteProfiles WRKY domain profile. 306 372 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cmo09g00247 384 MobiDBLite consensus disorder prediction 114 129 - -
Cmo09g00247 384 MobiDBLite consensus disorder prediction 130 145 - -
Cmo09g00247 384 SUPERFAMILY WRKY DNA-binding domain 309 370 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cmo09g00247 384 Pfam Plant zinc cluster domain 264 309 IPR018872 -
Cmo09g00247 384 MobiDBLite consensus disorder prediction 107 145 - -
Cmo09g00247 384 Pfam WRKY DNA -binding domain 313 369 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cmo09g00247 384 PANTHER WRKY TRANSCRIPTION FACTOR NTEIG-D48 30 384 - -
Cmo09g00247 384 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 30 384 IPR044810 GO:0003700
Cmo09g00247 384 Gene3D WRKY domain 297 372 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cmo09g00247 384 SMART WRKY_cls 311 371 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo01g01876 Cmo09g00247 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g01620 Cmo-Chr1:12343923 Cmo09g00247 Cmo-Chr9:1115812 1.56E-77 dispersed
Cmo02g01814 Cmo-Chr2:10274315 Cmo09g00247 Cmo-Chr9:1115812 2.92E-52 dispersed
Cmo09g00247 Cmo-Chr9:1115812 Cmo20g00978 Cmo-Chr20:5451258 3.20E-14 dispersed
Cmo01g01876 Cmo-Chr1:13576602 Cmo09g00247 Cmo-Chr9:1115812 0 wgd
Cmo03g00982 Cmo-Chr3:7396973 Cmo09g00247 Cmo-Chr9:1115812 4.64E-110 wgd
Cmo07g00703 Cmo-Chr7:3171880 Cmo09g00247 Cmo-Chr9:1115812 6.15E-10 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10333 PF03106 WRKY 3.90E-25 CL0274 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo09g00247 - - cmo:103493562 652.514