Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo09g00249 ATGGGAACATGCCGATCCTCCCCCATTGTGCCTCTCCTCGTCTTCCTCCTCGTAACTTTACCGTCGGCGTTGCCCTCTTCGATCATCCCCGAGAGGACGGATGAGGAAGTGATGGCGCTCTACGACCAGTGGCGTGCCAAGCACGGGAAGTTGCACAATCACTTGGGACCAGAAAGCCAGAATCGATTCCACATATTCAAGGACAATCTCAAGTACATCGATGAAATTAACGCCCAAAATTTGCCCTATCGATTAGGTTTGAACGTGTTCGCAGATCTGACGAACGAGGAGTACCGATCCAAGTACTTGGGAGCTAAAATCGCCGCTGGTTCAAGGCGAAACAAGACGAGCAGCCGCTATCAGCCTCGCCTTGGGGATGAAGTCCCGGACTCCATCGATTGGAGGGAGAAAGGAGCCGTCGCTCCCATTAAAGATCAGGGAAGTTGTGGGAGTTGCTGGGCGTTCTCAACTATAGCTGCCGTGGAAAGCATAAACCAGATTGTTACAGGCGACTTGGTAGCATTATCAGAACAGGAGCTGGTGGATTGTGACATTTCTTACAACGAAGGTTGCAATGGTGGCTTAATGGACTATGCCTTCGAGTTCATCATCAACAATGGCGGCATTGATACTGAAGAAGATTATCCTTATAAAGGCTATGATAGCACCTGCATCCAATCTAAGAAAAATGCTAGGGTCGTTTCAATCGATGATTATGAAGACGTCCCTGTAAACAATGAAAAAGCACTGCAAAAAGCAGCAGCTAAACAGGTTGTGGCTGTTGCCATTGAAGGGGGAGGTAGAAGTTTCCAGCTATATCGATCGGGTATATTCACTGGAAGATGTGGGACAGATTTGGATCATGGTGTTAATGTGGTTGGATATGGGTCTGAAGGGGGCGTCGATTACTGGATTGTGAGAAACTCATGGGGTGCGAGCTGGGGTGAAAGTGGCTACATCAGGATGCAACGTAACGTCGCTTCCCCAAAAGGTCTCTGTGGGATTGCAATGGAGCCTTCTTACCCCATTAAAACCGGACTAAACCCACCTAATCCAGGCCCGACTCCTCCAAGTCCGGTGGAACCCCCAACTCCGGTGAAACCCCCAACTGTATGCGATGAATATTACGACTGTCCCGCCGCAGAAACTTGCTGCTGCCTCTTCCAGTTTTCAAACACATGCTTTGTATGGGGATGCTGCCCACTGGAAAGCGCCACCTGCTGTGATGACCTTTACAGCTGCTGCCCCCATGACTACCCCGTCTGTGACGTCCGTGCTGGAACCTGCTTGAAGAGCAAGAATGATGTTTTCGGAGTGAAGGCGATGAGGCGCACTGCAGCTGTAGCCAAACCATCGTGGGCACTTGGAGGAGGTGTGAGTGTTGGGAAGAGCAGTGCTTAA 1401 50.32 MGTCRSSPIVPLLVFLLVTLPSALPSSIIPERTDEEVMALYDQWRAKHGKLHNHLGPESQNRFHIFKDNLKYIDEINAQNLPYRLGLNVFADLTNEEYRSKYLGAKIAAGSRRNKTSSRYQPRLGDEVPDSIDWREKGAVAPIKDQGSCGSCWAFSTIAAVESINQIVTGDLVALSEQELVDCDISYNEGCNGGLMDYAFEFIINNGGIDTEEDYPYKGYDSTCIQSKKNARVVSIDDYEDVPVNNEKALQKAAAKQVVAVAIEGGGRSFQLYRSGIFTGRCGTDLDHGVNVVGYGSEGGVDYWIVRNSWGASWGESGYIRMQRNVASPKGLCGIAMEPSYPIKTGLNPPNPGPTPPSPVEPPTPVKPPTVCDEYYDCPAAETCCCLFQFSNTCFVWGCCPLESATCCDDLYSCCPHDYPVCDVRAGTCLKSKNDVFGVKAMRRTAAVAKPSWALGGGVSVGKSSA 466
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1121924 1125142 + CmoCh09G002490.1 Cmo09g00249 388251

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo09g00249 466 MobiDBLite consensus disorder prediction 344 364 - -
Cmo09g00249 466 Gene3D Cysteine proteinases 27 345 - -
Cmo09g00249 466 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 25 373 - -
Cmo09g00249 466 Pfam Granulin 383 430 IPR000118 -
Cmo09g00249 466 SMART pept_c1 128 343 IPR000668 GO:0006508|GO:0008234
Cmo09g00249 466 Gene3D Granulin 370 441 IPR037277 -
Cmo09g00249 466 ProSitePatterns Eukaryotic thiol (cysteine) proteases asparagine active site. 303 322 IPR025661 -
Cmo09g00249 466 SMART GRAN_2 372 429 IPR000118 -
Cmo09g00249 466 SUPERFAMILY Granulin repeat 369 403 - -
Cmo09g00249 466 Pfam Papain family cysteine protease 128 343 IPR000668 GO:0006508|GO:0008234
Cmo09g00249 466 CDD Peptidase_C1A 129 342 IPR039417 -
Cmo09g00249 466 Pfam Cathepsin propeptide inhibitor domain (I29) 41 98 IPR013201 -
Cmo09g00249 466 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 286 296 IPR025660 -
Cmo09g00249 466 ProSitePatterns Eukaryotic thiol (cysteine) proteases cysteine active site. 146 157 IPR000169 -
Cmo09g00249 466 SMART Inhibitor_I29_2 41 98 IPR013201 -
Cmo09g00249 466 PRINTS Papain cysteine protease (C1) family signature 146 161 IPR000668 GO:0006508|GO:0008234
Cmo09g00249 466 PRINTS Papain cysteine protease (C1) family signature 288 298 IPR000668 GO:0006508|GO:0008234
Cmo09g00249 466 PRINTS Papain cysteine protease (C1) family signature 303 309 IPR000668 GO:0006508|GO:0008234
Cmo09g00249 466 MobiDBLite consensus disorder prediction 345 364 - -
Cmo09g00249 466 SUPERFAMILY Cysteine proteinases 33 343 IPR038765 -
Cmo09g00249 466 PANTHER CYSTEINE PROTEASE 25 373 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo09g00249 K25900 RD21; cysteine proteinase RD21 [EC:3.4.22.-] - csv:101217590 779.245
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo01g01875 Cmo09g00249 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo09g00249 Cmo-Chr9:1121924 Cmo11g01798 Cmo-Chr11:12624730 2.25E-127 dispersed
Cmo01g01875 Cmo-Chr1:13568015 Cmo09g00249 Cmo-Chr9:1121924 0 wgd
Cmo11g01384 Cmo-Chr11:9670549 Cmo09g00249 Cmo-Chr9:1121924 7.75E-177 wgd
Cmo03g00980 Cmo-Chr3:7386979 Cmo09g00249 Cmo-Chr9:1121924 7.25E-146 wgd
Cmo07g00701 Cmo-Chr7:3162479 Cmo09g00249 Cmo-Chr9:1121924 8.09E-137 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g726 . Blo12g00966 . Bda03g00202 . Bpe04g00172 . . . . Cma01g01819 Cma09g00255 Car01g01420 . . Cpe06g00176 . . . . . . . . . . . . . . . . . Cone17ag0859 Cone20ag0206 Lsi04g01527 Csa04g02439 . . . . . Bda01g01515 . . . . Sed01g2687 Cmo01g01875 Cmo09g00249 . . . Car09g00214 . Cpe02g00195 Bhi09g03290 Tan01g4741 Cmetu07g1603 . Hepe01g1793 Mch11g0326 . Cla05g02070 Cam05g2222 Cec05g2241 Cco05g2282 Clacu05g2215 Cmu05g2082 Cre05g2206 . . Chy07g00156 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009051 1 1 1 0 0 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 0 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo09g00249 Cmo_Chr09 FPKM 8.626698 10.174797 4.068334 4.196041 13.997758 10.929993 16.257156 2.865696 2.967197 3.79246