Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cmo09g00254 | ATGAGAAACTACAGAATGGCGAAACGGCATTGCTACCCACTTTCAATTGCGCATTCAATTTCAGGTCACCAAAACGGTTCACTTTTTCTTGATTCCCTCTACTGCTTGGAGGAGGAGGAAGAAATTGGGGATGGACATTCCCAGCCAAAGATCGAAGCTTTCTCGATAAATGTTAACGTCGATTCCCCGAATTCTGTGTTCTTGTCGGACAGGGACTTTCTCTGGGAAGACGAGGAATTGGTGTCTCTGTTCTCAAAGGAGAACAGAAATAAGCTCCACGATGCTCTCCCACACAATCCCTCTCTAGCTGCGGCTCGCTCCGACGCGGTTGAGTGGATTCTCAAGGTCAATGCCCATTACTCCTTTACTGCCCTCACCGCCGTTTTGGCCGTTGATTATGTCGACAGGTTCCTGTCCAGCCCCCATTTTCAGATTGACAAGCCATGGATGACCCATCTCACCGCCATTGCCTGTTTATCTCTCGCTGCTAAAGTGGAGGAAACCGAAGTTCCCCTTCTTTTAGATCTCCAGGTGGAGGAAAATAGGTACTTTTTCGAAGCTAAAACCATTAAAAGAATGGAGATTCTTGTTCTCTCTACGCTTCTTTGGAGAATGAATCCGGTGAACCCACTTTCATTTTTGGACTATATTGTAAGACGGCTCGGCTTCAAGGACCAGCTCTGTTCTGAATTCCTCTGTAAATGTGAAAGATTACTTCTTTCTGTCATTTTAGATTCCAGATTCGTATGCTTTCTTCCATCAATGATAGCAAGCGCCATTATTTTTCAAGTTATCAACGACAAAGAACCCCATGTCGCAGCAAAATACCACGATCAGCTTCTGGGTTTTCTTCAAATCGACAAGAATAAGGTGGAAGATTGCTCACAATTCATCATAGAGGCTTCATCGAGAGGACACACAAACAAACAAAGATTTGGTTTAGTGGACATGTCGTGCAGCTCAAATGGTCGGACTCAGAATGTGGACCGTGTAGTGTCGTCGCCGGAGACAGCAACGAAGAAGAGAAAAATTGATGAACAGCCACCGTAG | 1050 | 45.24 | MRNYRMAKRHCYPLSIAHSISGHQNGSLFLDSLYCLEEEEEIGDGHSQPKIEAFSINVNVDSPNSVFLSDRDFLWEDEELVSLFSKENRNKLHDALPHNPSLAAARSDAVEWILKVNAHYSFTALTAVLAVDYVDRFLSSPHFQIDKPWMTHLTAIACLSLAAKVEETEVPLLLDLQVEENRYFFEAKTIKRMEILVLSTLLWRMNPVNPLSFLDYIVRRLGFKDQLCSEFLCKCERLLLSVILDSRFVCFLPSMIASAIIFQVINDKEPHVAAKYHDQLLGFLQIDKNKVEDCSQFIIEASSRGHTNKQRFGLVDMSCSSNGRTQNVDRVVSSPETATKKRKIDEQPP | 349 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 9 | 1141404 | 1143154 | + | CmoCh09G002540.1 | Cmo09g00254 | 388256 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cmo09g00254 | 349 | Gene3D | - | 104 | 206 | - | - | |
| Cmo09g00254 | 349 | PANTHER | CYCLIN D3.1 PROTEIN | 56 | 332 | - | - | |
| Cmo09g00254 | 349 | MobiDBLite | consensus disorder prediction | 335 | 349 | - | - | |
| Cmo09g00254 | 349 | SUPERFAMILY | Cyclin-like | 209 | 309 | IPR036915 | - | |
| Cmo09g00254 | 349 | SUPERFAMILY | Cyclin-like | 75 | 206 | IPR036915 | - | |
| Cmo09g00254 | 349 | CDD | CYCLIN | 106 | 198 | IPR013763 | - | |
| Cmo09g00254 | 349 | PANTHER | CYCLINS | 56 | 332 | IPR039361 | - | |
| Cmo09g00254 | 349 | SMART | Cyclin_C_2 | 208 | 326 | IPR004367 | - | |
| Cmo09g00254 | 349 | Pfam | Cyclin, N-terminal domain | 97 | 206 | IPR006671 | - | |
| Cmo09g00254 | 349 | Gene3D | - | 207 | 296 | - | - | |
| Cmo09g00254 | 349 | Pfam | Cyclin, C-terminal domain | 208 | 310 | IPR004367 | - | |
| Cmo09g00254 | 349 | ProSitePatterns | Cyclins signature. | 106 | 137 | IPR006671 | - | |
| Cmo09g00254 | 349 | MobiDBLite | consensus disorder prediction | 325 | 349 | - | - | |
| Cmo09g00254 | 349 | SMART | cyclin_7 | 111 | 199 | IPR013763 | - |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Cmo09g00254 | Cmo12g00510 | CCT | |
| Cmo05g00163 | Cmo09g00254 | CCT | |
| Cmo05g00163 | Cmo09g00254 | ECH | |
| Cmo09g00254 | Cmo12g00510 | ECH | |
| Cmo01g01869 | Cmo09g00254 | CST |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cmo09g00254 | Cmo-Chr9:1141404 | Cmo19g00602 | Cmo-Chr19:6691342 | 4.23E-72 | dispersed | |
| Cmo01g01869 | Cmo-Chr1:13549712 | Cmo09g00254 | Cmo-Chr9:1141404 | 0 | wgd | |
| Cmo11g01386 | Cmo-Chr11:9696714 | Cmo09g00254 | Cmo-Chr9:1141404 | 4.01E-72 | wgd | |
| Cmo12g00510 | Cmo-Chr12:3144150 | Cmo09g00254 | Cmo-Chr9:1141404 | 4.26E-105 | wgd | |
| Cmo16g00370 | Cmo-Chr16:1697863 | Cmo09g00254 | Cmo-Chr9:1141404 | 1.25E-89 | wgd | |
| Cmo04g00511 | Cmo-Chr4:2537126 | Cmo09g00254 | Cmo-Chr9:1141404 | 1.33E-88 | wgd | |
| Cmo05g00163 | Cmo-Chr5:696188 | Cmo09g00254 | Cmo-Chr9:1141404 | 1.65E-108 | wgd | |
| Cmo07g00695 | Cmo-Chr7:3141146 | Cmo09g00254 | Cmo-Chr9:1141404 | 1.49E-77 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cmo09g00254 | K14505 | - | csv:101218302 | 549.666 |