Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cmo09g00266 | ATGGCGGACAAGGAGAATATATTTCGTCTCACTCGGGCTTCTAAGAAGAGGTTGGCCGAGGCTGCTACCCCCGACGACCGCTCCTCCAACAAGAGGCGGGTCGTTCTTGGGGAGCTTCCTATTTTGCAGAATGCTTCTTCTTCCGTCAACCGGAAGTCCAGGTCTAGAGCTAGCAGGCAGAGACGGAGAGTGAAATCAAGGGATATTGCGGGGACAAGTGCTGCTGCTGCTGCTGCTGCTGAAATCAATCCACTTCCGCAACGTGATGTCACGTTATCAGATGAGGGCAATTCGGAAGACCCCCAAATGTGCAGGGGTTACGCCTCTGATATTTATGACTATCTTCGCGCAACGGAGACTGATCCAAGAAGAAGGCCCCTACCAGATTACATCGGGACGGTACAAAAAGATATTAGTGCCAATATGAGGGGAATTCTGGTGGATTGGTTGGTTGAAGTTGCAGAAGAATACAAACTAGTTTCAGATACACTATACCTCTCTGTTTCATATGTTGACAGATACTTATCTCTAAATGCAATCAGCAGGCAAAAACTTCAGTTGGTGGGAGTTTCTGCCATGCTCATTGCCTCAAAGTATGAAGAAATTAGTCCTCCACATGTTGAAGAATTTGTTTATATCACCGACAATACCTACAATAGAGAAGAGGTGGTTGAGATGGAGGCTGATATATTAAAATCACTGGAATTTGAACTTGGAGATCCCACAATAAAGACATTTTTAAGGCAAGTGCAGTGGAGATTCACAATGGTTGCTCAAGAGACTTATGAGTTTAATACATTGCAATTTGAATTCTTGGGCTACTATCTTGCTGAGTTAAGCCTACTAGACTACAACTGTGTCAAATTTTTACCGTCTCTCGTTGCTGCATCTGTTATATTTCTAGCACGATTTATGATCCAACCTAAGAAGCATCCTTGGATCTCCAGGTTGGAGCATTTTACTGGATATAAGCCAGCTGATATGAAAGACTGCATTCTACTCGTACATGATTTATACCTTAGTAGAAGAGGAGGCGCTTTGGCAGCTATAAGGGAGAAATACAAACAACACAAGTTCAAATTTGTGTCTGTCATGCCTTCACCTCCAGAGATTCCTATTCCATATTTTGAAGATGTTAGAATATGA | 1146 | 43.19 | MADKENIFRLTRASKKRLAEAATPDDRSSNKRRVVLGELPILQNASSSVNRKSRSRASRQRRRVKSRDIAGTSAAAAAAAEINPLPQRDVTLSDEGNSEDPQMCRGYASDIYDYLRATETDPRRRPLPDYIGTVQKDISANMRGILVDWLVEVAEEYKLVSDTLYLSVSYVDRYLSLNAISRQKLQLVGVSAMLIASKYEEISPPHVEEFVYITDNTYNREEVVEMEADILKSLEFELGDPTIKTFLRQVQWRFTMVAQETYEFNTLQFEFLGYYLAELSLLDYNCVKFLPSLVAASVIFLARFMIQPKKHPWISRLEHFTGYKPADMKDCILLVHDLYLSRRGGALAAIREKYKQHKFKFVSVMPSPPEIPIPYFEDVRI | 381 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 9 | 1172689 | 1178848 | - | CmoCh09G002660.1 | Cmo09g00266 | 388268 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cmo09g00266 | 381 | MobiDBLite | consensus disorder prediction | 1 | 72 | - | - | |
| Cmo09g00266 | 381 | ProSitePatterns | Cyclins signature. | 143 | 174 | IPR006671 | - | |
| Cmo09g00266 | 381 | Pfam | Cyclin, C-terminal domain | 241 | 368 | IPR004367 | - | |
| Cmo09g00266 | 381 | PIRSF | Cyclin_A_B_D_E | 3 | 372 | IPR039361 | - | |
| Cmo09g00266 | 381 | SMART | cyclin_7 | 245 | 337 | IPR013763 | - | |
| Cmo09g00266 | 381 | SMART | cyclin_7 | 148 | 232 | IPR013763 | - | |
| Cmo09g00266 | 381 | Gene3D | - | 110 | 364 | - | - | |
| Cmo09g00266 | 381 | MobiDBLite | consensus disorder prediction | 1 | 33 | - | - | |
| Cmo09g00266 | 381 | CDD | CYCLIN | 241 | 336 | IPR013763 | - | |
| Cmo09g00266 | 381 | SUPERFAMILY | Cyclin-like | 99 | 238 | IPR036915 | - | |
| Cmo09g00266 | 381 | PANTHER | CYCLIN-A3-1-RELATED | 24 | 379 | - | - | |
| Cmo09g00266 | 381 | SUPERFAMILY | Cyclin-like | 241 | 370 | IPR036915 | - | |
| Cmo09g00266 | 381 | Gene3D | - | 124 | 239 | - | - | |
| Cmo09g00266 | 381 | CDD | CYCLIN | 142 | 231 | IPR013763 | - | |
| Cmo09g00266 | 381 | PANTHER | CYCLINS | 24 | 379 | IPR039361 | - | |
| Cmo09g00266 | 381 | SMART | Cyclin_C_2 | 241 | 368 | IPR004367 | - | |
| Cmo09g00266 | 381 | Pfam | Cyclin, N-terminal domain | 110 | 238 | IPR006671 | - |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Cmo05g00159 | Cmo09g00266 | CCT | |
| Cmo09g00266 | Cmo12g00518 | CCT | |
| Cmo09g00266 | Cmo12g00518 | ECH | |
| Cmo05g00159 | Cmo09g00266 | ECH | |
| Cmo01g01859 | Cmo09g00266 | CST |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cmo04g02500 | Cmo-Chr4:18395584 | Cmo09g00266 | Cmo-Chr9:1172689 | 8.93E-107 | dispersed | |
| Cmo09g00266 | Cmo-Chr9:1172689 | Cmo15g00668 | Cmo-Chr15:3266992 | 1.20E-104 | dispersed | |
| Cmo01g01859 | Cmo-Chr1:13520996 | Cmo09g00266 | Cmo-Chr9:1172689 | 0 | wgd | |
| Cmo11g01399 | Cmo-Chr11:9837969 | Cmo09g00266 | Cmo-Chr9:1172689 | 9.86E-92 | wgd | |
| Cmo12g00518 | Cmo-Chr12:3185191 | Cmo09g00266 | Cmo-Chr9:1172689 | 6.91E-162 | wgd | |
| Cmo05g00159 | Cmo-Chr5:686871 | Cmo09g00266 | Cmo-Chr9:1172689 | 3.62E-159 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cmo09g00266 | K06627 | - | csv:101207493 | 647.506 |