Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo09g00268 ATGTCGTTATCGTGGCTTCATCTGATTGGCCAATTAGTTAGCGACGAAAATAAGAAAAACTGCAATGACTTTGGTTTCAGTCTCAATATTTTGGGGGCGCAGAGGGCTATTTACCGGGTCCTCTCCGCGCCAATTACCGTCGTTTCTCCTCCGTCTGCACCATCGCGTACGGTCCACCAGCACACCATGTCTCCGCCCTCCACCAGTTTACATTCTGCCGTCTTCGTCTATTGTTTAGTTGGTTTCAATTTGCTGGGCGCGATTTTTTCCTCATCTGTGGACTCTAGAGACTTCTATTATCAGCAGCGCCCTGTGATTCTTCCTCTCTATATTTCACCGACGAATTCCACCCATCAGCGCGTTTTGGACCGTGATCATCGTCTCCGGCACCTGTTGAACTTGGAAAAACCCCACTCGTCAAATGCTCGAATGAGGCTCTACGATGACCTCCTTACCAACGGGTATTACACGACGCGTCTATGGATTGGGACTCCTCCACAAGAATTTGCTCTTATTGTGGACACCGGAAGTACTGTGACATACGTTCCATGCTCTAACTGCGTAGATTGCGGGAACCATCAGGATCCAAGGTTCCAACCGAAGTTGTCTAGCTCATATCAACCTGTTAAGTGCAATATCGATTGTAGCTGTGATGACAATGGAGTCCAGTGTACATACGAGAGACGGTACGCAGAGATGAGTACTAGCAGCGGTGTGCTTGCTGAGGACATCATGTCATTTGGAAAAGAAAGTGAACTTCTACCCCAGCGTGCAGTCTTTGGCTGTGAAACTATGGAAACTGGCGATCTTTATACCCAGCGTGCTGATGGGATTATGGGTTTGGGCCGTGGTACACTCAGTGTGATGGACCAACTTGTTGGCAAGGGTGCTGTGAGTAATTCATTTTCATTATGTTATGGTGGGATGGATGTTGGTGGGGGTGCAATGGTTCTTGGTGGGATCTCTTCACCCCCTGGTATGGTATTTACCCACTCGGACACATCTCGAAGCCCATATTATAATATAGAGTTGAAGGAAATACATGTTGCTGGGAAGCCATTGAAGTTGAATCCAAGGACTTTCGATGGGAAGTATGGATCTGTCTTGGATAGTGGAACTACATATGCTTATTTTCCAGAAAAAGCCTACTATGCATTTAAGGACGCTCTAATGAAGAAAATTAGTTTCCTGAAACAAATCAGTGGTCCTGACCCGAATTTTAAAGATATTTGTTTTTCTGGTGCTGGGAGGGATGTGTCTGAACTCTCAAAAGTCTTTCCAGAGGTTGCTATGGTATTTGCCAATGGACAGAAAATTTCACTCTCTCCGGAGAACTACTTGTTCCGGCATACGAAGGTTAGTGGTGCATATTGTCTAGGAATCTTTAAAAATGGTAATGATCAGACAACACTTTTGGGAGGAATTATTGTTCGTAATACCCTTGTCACCTATGATCGAGAGAACACCAAAATTGGGTTTTGGAAGACTAACTGTTCTGAACTTTGGAAGAATCTGCATTATCTTTCTCCTGCTCCTCCTCCAGCTCCTCCTCCAGCTCCTTTACCTTCCTATGGTCAGAATACAAGTAATGAAATTCCTCCACCTGTTTCTCCAACTGTACCATTTCTTTCCGGTGAATTTCAGGTTGGAGTCATAACATTTAATATGGTGCTTCATGCCAACAAATCCTCCGTGAAACTTAACATCACTGAGCTTGCAGAATTTATTGCCAATGAGCTTGAAGTAAATGTCTCACAGGTTCACGTGCTGAACTTTACATCGGGAGAAACTGATTTCTTCATTAGATGGGCCATCTTCCCTGCTGATTCTGCTGGTTATATATCTAATTCCACGGCAATGGACATAATTTCTCGCCTGAAGGAACATGACTTGCAACTTCCTGAAAAATTCGGAAGCTATCAGCTGGTTGAATTGAATGTTGAACCTCCATTAAAGAAGACATGGATGGAGCAGCACTTCTGGTCTATGATGTCTATTGTAGCAGCAGTTACCTTAGTTGTTGGATTGGCAGCCGGAAGCACGTGGCTGATTTGGAGATACAGACGGAGGGAGCTGAGTTCATATGAGCCTGTTGGTGCTGTCGGACCCGAGCAAGAGCTTCAGCCACTATAG 2133 44.96 MSLSWLHLIGQLVSDENKKNCNDFGFSLNILGAQRAIYRVLSAPITVVSPPSAPSRTVHQHTMSPPSTSLHSAVFVYCLVGFNLLGAIFSSSVDSRDFYYQQRPVILPLYISPTNSTHQRVLDRDHRLRHLLNLEKPHSSNARMRLYDDLLTNGYYTTRLWIGTPPQEFALIVDTGSTVTYVPCSNCVDCGNHQDPRFQPKLSSSYQPVKCNIDCSCDDNGVQCTYERRYAEMSTSSGVLAEDIMSFGKESELLPQRAVFGCETMETGDLYTQRADGIMGLGRGTLSVMDQLVGKGAVSNSFSLCYGGMDVGGGAMVLGGISSPPGMVFTHSDTSRSPYYNIELKEIHVAGKPLKLNPRTFDGKYGSVLDSGTTYAYFPEKAYYAFKDALMKKISFLKQISGPDPNFKDICFSGAGRDVSELSKVFPEVAMVFANGQKISLSPENYLFRHTKVSGAYCLGIFKNGNDQTTLLGGIIVRNTLVTYDRENTKIGFWKTNCSELWKNLHYLSPAPPPAPPPAPLPSYGQNTSNEIPPPVSPTVPFLSGEFQVGVITFNMVLHANKSSVKLNITELAEFIANELEVNVSQVHVLNFTSGETDFFIRWAIFPADSAGYISNSTAMDIISRLKEHDLQLPEKFGSYQLVELNVEPPLKKTWMEQHFWSMMSIVAAVTLVVGLAAGSTWLIWRYRRRELSSYEPVGAVGPEQELQPL 710
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1179658 1185681 + CmoCh09G002680.1 Cmo09g00268 388270

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo09g00268 710 PANTHER ASPARTYL PROTEASES 95 544 IPR001461 GO:0004190|GO:0006508
Cmo09g00268 710 ProSiteProfiles Peptidase family A1 domain profile. 156 494 IPR033121 -
Cmo09g00268 710 Pfam Xylanase inhibitor C-terminal 340 493 IPR032799 -
Cmo09g00268 710 CDD pepsin_A_like_plant 155 498 IPR034161 -
Cmo09g00268 710 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 171 182 IPR001969 GO:0004190|GO:0006508
Cmo09g00268 710 Gene3D Acid Proteases 327 503 IPR021109 -
Cmo09g00268 710 SUPERFAMILY Acid proteases 152 503 IPR021109 -
Cmo09g00268 710 PRINTS Pepsin (A1) aspartic protease family signature 162 182 IPR001461 GO:0004190|GO:0006508
Cmo09g00268 710 PRINTS Pepsin (A1) aspartic protease family signature 367 378 IPR001461 GO:0004190|GO:0006508
Cmo09g00268 710 PRINTS Pepsin (A1) aspartic protease family signature 470 485 IPR001461 GO:0004190|GO:0006508
Cmo09g00268 710 Pfam Xylanase inhibitor N-terminal 156 320 IPR032861 -
Cmo09g00268 710 PANTHER EUKARYOTIC ASPARTYL PROTEASE FAMILY PROTEIN 95 544 - -
Cmo09g00268 710 Gene3D Acid Proteases 133 319 IPR021109 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo09g00268 - - - cmos:111442809 1420.6
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g00517 Cmo-Chr2:2875336 Cmo09g00268 Cmo-Chr9:1179658 0 dispersed
Cmo09g00268 Cmo-Chr9:1179658 Cmo02g01402 Cmo-Chr2:8313305 2.54E-50 dispersed
Cmo09g00268 Cmo-Chr9:1179658 Cmo20g00997 Cmo-Chr20:5973357 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g682 . Blo12g00980 . Bda03g00191 . Bpe04g00164 . . . . . Cma09g00272 . . . . . . . . . . . . . . . . . . . . . Cone17ag0871 Cone20ag0219 . Csa04g02461 . . . . . . . . . . . . Cmo09g00268 . . . Car09g00227 . . Bhi09g03250 . . . Hepe01g1811 Mch11g0344 . Cla05g02090 . . . . . . . . Chy07g00175 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002183 1 4 2 1 2 2 3 2 2 2 2 2 3 2 2 3 2 3 3 2 2 1 3 2 2 2 2 1 2 2 64
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo09g00268 Cmo_Chr09 FPKM 3.454902 5.775668 4.96091 4.841376 4.36111 2.801089 4.134102 1.758342 3.402499 2.384056