Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo09g00275 ATGAGTTGCAGCGGCTGCAGAGTGCTTCGAAAGGGCTGCAACGAAGCTTGCGTTCTAAGGTCCAGTCTCCACTGGATTCATTCGCCGGAAGCCCAAGCCAACGCCACCTTGTTTCTCGCTAAATTCTTTGGCCGTAGTGATCTCTTGTCCTTCATCGCCGCCGTCCCCCATCATCAAAGACCTGCTCTGTTTCAGTCTCTGTTATTCGAGGCTTGCGGCCGCACCGTCAACCCAGTTAGCGGCGCCGTTGGTCTCTTGTCGAGCGGGAACTGGCACGTCTGTCAGCTGGCGGCGGAAACCGTTCTCAGCGGCGGAGTTCTCCGCCCCATACCCGGAATCGAACTTTCGGGAAATCCCACGCGCAACGTCGATGATTCCTCCCTTACTTCCAATACCGATGTCTGGACCACCACCGGACAAAATCTTCAACTCTACCCATCCACTCCGTCGGATTTCCGGTGCCTCCCTGATCTCGCCGTCGCCGCCGTAAGAGCGAAGAATCATACCCCGGAGAATCGGCGGTCTCTAGATTCCGAAGACTCGATCATGACCAGCTTCGGAAGCGGCGACCGACGGAAACAGAGGAAGCTTTTAAATTTATTCATCTGA 609 55.67 MSCSGCRVLRKGCNEACVLRSSLHWIHSPEAQANATLFLAKFFGRSDLLSFIAAVPHHQRPALFQSLLFEACGRTVNPVSGAVGLLSSGNWHVCQLAAETVLSGGVLRPIPGIELSGNPTRNVDDSSLTSNTDVWTTTGQNLQLYPSTPSDFRCLPDLAVAAVRAKNHTPENRRSLDSEDSIMTSFGSGDRRKQRKLLNLFI 202
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1210913 1212057 - CmoCh09G002750.1 Cmo09g00275 388277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo09g00275 202 ProSiteProfiles LOB domain profile. 1 107 IPR004883 -
Cmo09g00275 202 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 1 202 - -
Cmo09g00275 202 PANTHER LOB DOMAIN-CONTAINING PROTEIN 39-LIKE 1 202 - -
Cmo09g00275 202 MobiDBLite consensus disorder prediction 166 188 - -
Cmo09g00275 202 Pfam Lateral organ boundaries (LOB) domain 2 101 IPR004883 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo01g01851 Cmo09g00275 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo09g00275 Cmo-Chr9:1210913 Cmo14g00825 Cmo-Chr14:4272280 7.36E-48 dispersed
Cmo01g01851 Cmo-Chr1:13487541 Cmo09g00275 Cmo-Chr9:1210913 4.26E-112 wgd
Cmo03g00962 Cmo-Chr3:7221792 Cmo09g00275 Cmo-Chr9:1210913 5.43E-61 wgd
Cmo07g00669 Cmo-Chr7:3018288 Cmo09g00275 Cmo-Chr9:1210913 6.51E-60 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10334 PF03195 LOB 1.60E-24 No_clan Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo09g00275 - - csv:101208953 342.428