Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo09g00277 ATGGAGGAGCTTGATTTCACGCCACTTATTCCTCCGCCCACGGCGGAGATGCCCGATTGGTTCTGTCATTTGGATTCTTTCACGCCCAATTTGCCTTCTTGTGGCAATGCTATCGATCAATTCCCCTGTATTGCTGCTGCTGATCATTATATGTCCATGTCTAATGCTGCCATTGAAGAGAACAAGATGGACTCCATTTTCTCAGCCTGTACTGACGTTTTGCTGCAAGAGATCTCTGTTTTTTCGGGTGAAGATAGATATCTAAACATGGATGTTCAAACCCAGATAGGGAATGATCATAATGCTACCAATTCTGCTAAGGCATTCCATCACAAAAGGAAATCCATTGTCGTCGCTGATGATGATCATCATCACAACAATCTCAACAACCCTACTAAGAAAATTCGTACTTCAAACAATAAAATTAGGAAAGCTACACCGAATAGCAATAAAAAATTGAGCACTCGGCGGCGCAAATGTGAAGAGGATCAGGAATCTGGAGGGCCTGATATGAACAGCTGCAGCAGCGCTAACTCATCAGAGGATGACAGCGCTTCACAAGATACTAACGGTGGTGGCGCTGTTTTAGAGGGCGAGGCATCGCCGCCAAAAGCCAAAACCAGAGCCACCAGAGGCTCTGCTACTGATCCGCAAAGCCTTTATGCAAGGAAGAGAAGAGAGAGAATCAATGAGCGGCTTAGAATTCTGCAGAAACTTGTCCCTAATGGAACAAAGGTTGACATCAGCACAATGCTTGAGGAAGCAGTTCATTACGTGAAATTTCTGCAGCTTCAGATAAAGGTGCCGCTCGTCGGAGTCCAAAGTGAATTCCCAACTGGAGTCCCGTTTGATACTCACCCGCCACCAATTGCAAAGCCGAAGAAAGGTATAAATAGCGAGCCAAGGCCTGTCGAACCGATTCCTCTTCCTCCTCTCGCCCCGGCGCGCACGCACTTCTTCCTATCCCGATCACCAACGCAGTCATCTGAATTCAGAATGTCGAATCGTTACAACCACGATGGAAACAACAAGGGCCTAAGGAAAGAGCAGAAGAAGTACATTCCCAAGAATCAGATTCAATCCACAAATGAACGCCCCAACCCTAAACCTAACCTTTCCACTTCCCTCAGACAATCGCTACCTAAGCCATCCGATTCTGCTGCTGTAAGCAGTTCTGCTACGCCATCAATGAGTAGGATTCAGATGGGTGCGAATGGAGATTGGGTGTCTAGCAGAGCTACTGGTGGTAGTTTCGTGAATTACTTGCCACAGGACGAGGCCGTTGCCACTGGTCTTCGCGCCGAGGAAGGGGCATTGGATCCGATGGAATCTCAAAGAGTCGTAGATCTTTTGAACAGAGAGTTGTCTCGGCTGCTCAAGTTGAGTGCTAAAGAGTTTTGGACGGAAGTGGCTAGGGACACTTCCTTGCATGAATTTCTCGATAGCTTCCTAAAATTCAGGAGTAGATGGTATGATTTTCCTCATCGTGGAGCAAATGGAATAGTTGCAGGGGTCATCGTTGGAGAATGTGAATTAAGCCGCCGTGTTTTCATGGTATTATATCGCATGTCTTCCAATAGGGATCCTGGAGCACGAGCTGCTGATAGCCTCAGTTTAAAAGATCATGGAGTCCTTCTGCAGGGAAAGAAGTTGCTTGACCTTCCAAAGTTACTTGATATATGTGCTATATATTATCACGAGAATGAAGATCTAACTAGAACACTGGTCGAGAATGCAATAAAATCCCAGCCTAGTATTCATGAAACTCTACCATCGGTTATATCTCACTTCCTCAGCATTGTCTCTATGATGCATCAAAGATGCAACTCATCTCTTGAGACTCTCTTCTCCTCCAGTAGCAGTGGAGAAAGTGGGTACAGTAAGCTTCAAGCTGACTTCTTGGAGGTGATTGATTTTATCAATGATGCAATTGTCACTCTGGACTCTTTTGTTGCTGCATACAGACTGGCAGCTATATTCTTCTCCTCTGCTGTTGAAATAAGCTGTGGGAATGAGGATTTGCTTGGAACTCTTGCAAGATTGCATGATTTACTACTTCCATCCTTACAGCAGGGATTCCAAATTGTCTTTGTGCCCCGAGGAGATGATATGATGTCTAGTGTGGTAACAAGTTTGAAAATGCTAGCATTAAGAGTTGTAAGTCTGGGTTGGAAACTGCTGGAAATCTGCTATCTAGGTGACGAAGTGTTTGGAAATGACCTTGCTGTTCCAGTCTCTATGAAGATGTTCCCAGCAAATGTAGAAGATCCTGTCATAAGAGCGGATATCTTTATTCAAACTTTGAGAGAGATCAATGGGATCTCGCAACAGGCTCCGGATAAACAACTTGGTCAAACATTTCTTCAGCGTATGGAAAAGAACCACTCCGTAATGAACAGAATCAACAGTTTACGAAACAATGGTTGGATATTTGTCGATGATGAGCAATTTGATTATATATCAAAAATAGTTTATACCCCCACGCCTAATATTAAGGATTCATCTCTTTCCAAGGCACCTGTGATGAGCCACATATCAGAAGTAGATGAGGATTCTGCAATGTTGGAGTCGAAAATCTGTCAAATAAAGGATCTTTTCCCTGAGTATGGCAGTGGGTTTCTAGCTGCATGTCTGGTAGCTTATAATCAGAACCCTGAAGAGGTGATTCAACGAATCCTTGAGGGGACTCTTCATGCTGATCTTCAGTCCTTGGACACTTCCTTAGAAACAATGCCAGTTCCCAATTCTAGTGCGGCTGCTATTAATAGGAATGACAAAGGAAAAGGAAAACTATTTGAGTCTTCAACAGTTGCCTACACCGACCAAGTCTCTCAGAGTAAAGATTTAATGGTTGAAGGCCCTTCAGTTTCATCTACTTTTAGTGGCAGATATGTTCGAAAGTCTAAAGATGATATGCCGTACTCAGAGACCCTTGACAGTAGAAATGAAGCAGATTCAGTGAGGACTGCGTCTTTGGTTTCCCAATATGAATATGAAGATGAGTATGATGACTCCTTTGATGATCTTGGTATTAGCATAGCAGAGACAGCTACAGAAGATAATGAAGACTTGGTGAGTCAAAAGTTGAGTTCAGATTTGGGTAACTCTTCGAACTCAAAAAATGCAAGTTCAGCACAAAATGCTTCCAACTCAAAGTGGGGATCTAAAAGAAAACCTCAATACTACGTCAAGGATGGTAAAAATTATAGTTACAAAGTTGCAGGGTCGATTGCAGTTTCCAATTCTGACGAGGCATCTTTAGTCACTCAAGCTCAGAAAGAACTAATTCATGGACTTGGACGCGGAGGCAACTTGCCCCTCGGGGCAGTAAAAAAACTGACAGAGTCGGAGCAGGATAGTCAGCCTGATGTTTCTGCAGCAGATCCGAGAGATAACGTACGGAAGTCCTGGGGCAGAGGTAGTAGAAGAGAAGTGGGAAGTGGATCAGCTGCAGGCGTGCCTGAAGGACAAGGTAAACAACCAAATGTGGCTGAAGTTTCAGAAAGGCGGGGAAGAGGCGGCAACAGAGGCCGAGGAAGGGGGGGAGCATCTGTTAATCTGTCCGATCGAGTGTTTTTTCCCTATAGAAACACCCCTCACCCCCCAAAGCAGTACCAAATACACAGATTTAATATGGATCCATTTGTTTTATCATCGATTGCATACGAGCATATGACCCTATTAGTCGAGTTGAACCTCTGCAGCACAGTGTTTCTCTTAGAAGATGTAGCTGACTGGCAAATTTTTATAGTAATTTGA 3759 44.13 MEELDFTPLIPPPTAEMPDWFCHLDSFTPNLPSCGNAIDQFPCIAAADHYMSMSNAAIEENKMDSIFSACTDVLLQEISVFSGEDRYLNMDVQTQIGNDHNATNSAKAFHHKRKSIVVADDDHHHNNLNNPTKKIRTSNNKIRKATPNSNKKLSTRRRKCEEDQESGGPDMNSCSSANSSEDDSASQDTNGGGAVLEGEASPPKAKTRATRGSATDPQSLYARKRRERINERLRILQKLVPNGTKVDISTMLEEAVHYVKFLQLQIKVPLVGVQSEFPTGVPFDTHPPPIAKPKKGINSEPRPVEPIPLPPLAPARTHFFLSRSPTQSSEFRMSNRYNHDGNNKGLRKEQKKYIPKNQIQSTNERPNPKPNLSTSLRQSLPKPSDSAAVSSSATPSMSRIQMGANGDWVSSRATGGSFVNYLPQDEAVATGLRAEEGALDPMESQRVVDLLNRELSRLLKLSAKEFWTEVARDTSLHEFLDSFLKFRSRWYDFPHRGANGIVAGVIVGECELSRRVFMVLYRMSSNRDPGARAADSLSLKDHGVLLQGKKLLDLPKLLDICAIYYHENEDLTRTLVENAIKSQPSIHETLPSVISHFLSIVSMMHQRCNSSLETLFSSSSSGESGYSKLQADFLEVIDFINDAIVTLDSFVAAYRLAAIFFSSAVEISCGNEDLLGTLARLHDLLLPSLQQGFQIVFVPRGDDMMSSVVTSLKMLALRVVSLGWKLLEICYLGDEVFGNDLAVPVSMKMFPANVEDPVIRADIFIQTLREINGISQQAPDKQLGQTFLQRMEKNHSVMNRINSLRNNGWIFVDDEQFDYISKIVYTPTPNIKDSSLSKAPVMSHISEVDEDSAMLESKICQIKDLFPEYGSGFLAACLVAYNQNPEEVIQRILEGTLHADLQSLDTSLETMPVPNSSAAAINRNDKGKGKLFESSTVAYTDQVSQSKDLMVEGPSVSSTFSGRYVRKSKDDMPYSETLDSRNEADSVRTASLVSQYEYEDEYDDSFDDLGISIAETATEDNEDLVSQKLSSDLGNSSNSKNASSAQNASNSKWGSKRKPQYYVKDGKNYSYKVAGSIAVSNSDEASLVTQAQKELIHGLGRGGNLPLGAVKKLTESEQDSQPDVSAADPRDNVRKSWGRGSRREVGSGSAAGVPEGQGKQPNVAEVSERRGRGGNRGRGRGGASVNLSDRVFFPYRNTPHPPKQYQIHRFNMDPFVLSSIAYEHMTLLVELNLCSTVFLLEDVADWQIFIVI 1252
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1225906 1239343 + CmoCh09G002770.1 Cmo09g00277 388279

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo09g00277 1252 MobiDBLite consensus disorder prediction 355 399 - -
Cmo09g00277 1252 MobiDBLite consensus disorder prediction 1021 1059 - -
Cmo09g00277 1252 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 213 262 IPR011598 GO:0046983
Cmo09g00277 1252 MobiDBLite consensus disorder prediction 131 149 - -
Cmo09g00277 1252 CDD bHLH_AtIND_like 214 268 - -
Cmo09g00277 1252 ProSiteProfiles CUE domain profile. 854 897 IPR003892 GO:0043130
Cmo09g00277 1252 Pfam CUE domain 861 896 IPR003892 GO:0043130
Cmo09g00277 1252 Gene3D - 853 897 - -
Cmo09g00277 1252 PANTHER ACTIVATING SIGNAL COINTEGRATOR 1 COMPLEX SUBUNIT 2 ASC-1 COMPLEX SUBUNIT P100 340 1181 - -
Cmo09g00277 1252 SMART finulus 219 268 IPR011598 GO:0046983
Cmo09g00277 1252 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 213 268 IPR036638 GO:0046983
Cmo09g00277 1252 MobiDBLite consensus disorder prediction 1113 1183 - -
Cmo09g00277 1252 MobiDBLite consensus disorder prediction 1027 1056 - -
Cmo09g00277 1252 MobiDBLite consensus disorder prediction 118 225 - -
Cmo09g00277 1252 CDD CUE_ASCC2 856 895 IPR041800 -
Cmo09g00277 1252 SUPERFAMILY UBA-like 853 912 IPR009060 GO:0005515
Cmo09g00277 1252 MobiDBLite consensus disorder prediction 324 399 - -
Cmo09g00277 1252 Pfam Helix-loop-helix DNA-binding domain 223 263 IPR011598 GO:0046983
Cmo09g00277 1252 Gene3D - 215 268 IPR036638 GO:0046983
Cmo09g00277 1252 PANTHER ACTIVATING SIGNAL COINTEGRATOR 1 COMPLEX SUBUNIT 2 340 1181 - -
Cmo09g00277 1252 SMART cue_7 854 896 IPR003892 GO:0043130
Cmo09g00277 1252 MobiDBLite consensus disorder prediction 324 340 - -
Cmo09g00277 1252 MobiDBLite consensus disorder prediction 168 191 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo09g00277 K18667 ASCC2; activating signal cointegrator complex subunit 2 - csv:101221453 1357.04
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo01g01848 Cmo09g00277 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g02401 Cmo-Chr4:17881789 Cmo09g00277 Cmo-Chr9:1225906 1.43E-09 dispersed
Cmo09g00277 Cmo-Chr9:1225906 Cmo15g00764 Cmo-Chr15:3751026 2.01E-21 dispersed
Cmo01g01848 Cmo-Chr1:13463143 Cmo09g00277 Cmo-Chr9:1225906 0 wgd
Cmo11g01419 Cmo-Chr11:9982115 Cmo09g00277 Cmo-Chr9:1225906 8.50E-33 wgd
Cmo16g00342 Cmo-Chr16:1580268 Cmo09g00277 Cmo-Chr9:1225906 1.89E-14 wgd
Cmo04g00483 Cmo-Chr4:2409281 Cmo09g00277 Cmo-Chr9:1225906 7.68E-34 wgd
Cmo05g00146 Cmo-Chr5:642861 Cmo09g00277 Cmo-Chr9:1225906 2.52E-41 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g657 . Blo12g00984 . Bda03g00185 . Bpe04g00160 . . . . Cma01g01790 Cma09g00286 . . . Cpe06g00196 . . . . . . . . . . . . . . . Cone4ag1611 Cone7ag1341 . . . Csa04g02474 . . . . . . . . . . . Cmo01g01848 Cmo09g00277 . . . Car09g00240 . Cpe02g00217 Bhi09g03233 Tan01g4699 . . . Mch11g0359 . Cla05g02103 Cam05g2255 Cec05g2275 Cco05g2316 Clacu05g2251 Cmu05g2114 Cre05g2238 . . Chy07g00186 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002598 2 3 2 1 2 1 2 1 1 2 1 1 2 1 2 3 1 4 2 1 2 2 2 2 2 1 1 3 7 2 59
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10336 PF00010 HLH 5.20E-08 No_clan Cmo TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo09g00277 Cmo_Chr09 FPKM 98.983154 100.210136 37.922256 30.118782 23.925121 21.1763 25.392628 0.0 0.245789 0.378578